Wall clock time and date at job start Tue Mar 31 2020 23:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46947 * 2 1 4 4 N 1.29022 * 124.91621 * 90.00471 * 3 2 1 5 5 C 1.31778 * 117.12423 * 179.97438 * 4 3 2 6 6 C 1.50706 * 122.74863 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46901 * 305.02299 * 6 5 4 8 8 O 1.21274 * 120.00034 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99541 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99693 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.46660 * 35.00912 * 10 9 7 12 12 C 1.52997 * 109.47289 * 275.00198 * 10 9 7 13 13 C 1.52999 * 109.46684 * 155.00124 * 10 9 7 14 14 C 1.53002 * 109.47645 * 294.99878 * 13 10 9 15 15 C 1.52999 * 109.47304 * 179.97438 * 14 13 10 16 16 C 1.52998 * 109.46990 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.47197 * 180.02562 * 16 15 14 18 18 C 1.36942 * 120.00377 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99325 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99959 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00582 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99774 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47226 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47222 * 119.99652 * 22 20 18 25 25 H 1.48502 * 109.47154 * 239.99890 * 22 20 18 26 26 C 1.33633 * 114.50494 * 0.23135 * 5 4 3 27 27 S 1.70972 * 124.91517 * 269.99767 * 3 2 1 28 28 H 1.08998 * 109.47193 * 59.99803 * 1 2 3 29 29 H 1.09000 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46787 * 299.99486 * 1 2 3 31 31 H 1.09000 * 109.47225 * 239.99890 * 2 1 3 32 32 H 1.09005 * 109.47404 * 119.99869 * 2 1 3 33 33 H 1.09002 * 109.47036 * 185.03073 * 6 5 4 34 34 H 1.08999 * 109.47314 * 65.02094 * 6 5 4 35 35 H 0.97000 * 120.00190 * 0.02562 * 9 7 6 36 36 H 1.09002 * 109.47153 * 179.97438 * 12 10 9 37 37 H 1.09001 * 109.46832 * 60.00146 * 12 10 9 38 38 H 1.09004 * 109.47261 * 300.00128 * 12 10 9 39 39 H 1.09001 * 109.47317 * 55.00694 * 13 10 9 40 40 H 1.09006 * 109.47194 * 175.00331 * 13 10 9 41 41 H 1.08993 * 109.47092 * 300.00720 * 14 13 10 42 42 H 1.09007 * 109.46700 * 60.00493 * 14 13 10 43 43 H 1.09001 * 109.47622 * 300.00794 * 15 14 13 44 44 H 1.09007 * 109.46705 * 60.00661 * 15 14 13 45 45 H 1.09001 * 109.47690 * 300.00879 * 16 15 14 46 46 H 1.09007 * 109.46754 * 60.00817 * 16 15 14 47 47 H 0.97001 * 119.99863 * 0.02562 * 17 16 15 48 48 H 0.96997 * 120.00115 * 180.02562 * 21 20 18 49 49 H 1.07995 * 126.04746 * 179.77166 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7142 3.3479 0.8793 6 6 3.0403 4.2716 2.0246 7 6 1.8450 4.3835 2.9356 8 8 0.8287 3.7730 2.6803 9 7 1.9060 5.1613 4.0346 10 6 0.7438 5.2706 4.9200 11 1 0.2223 4.3141 4.9546 12 6 -0.2027 6.3488 4.3885 13 6 1.2090 5.6490 6.3276 14 6 2.0545 4.5136 6.9079 15 6 2.5202 4.8923 8.3152 16 6 3.3651 3.7566 8.8957 17 7 3.8105 4.1189 10.2435 18 6 4.5864 3.2511 10.9647 19 1 4.8702 2.2996 10.5397 20 6 5.0079 3.5943 12.2419 21 7 4.6615 4.7535 12.7601 22 14 6.0668 2.4107 13.2255 23 1 6.3142 1.1850 12.4244 24 1 7.3622 3.0593 13.5515 25 1 5.3653 2.0466 14.4827 26 6 2.8380 3.7117 -0.4006 27 16 2.3585 2.3435 -1.4020 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.2939 5.2576 1.6352 34 1 3.8869 3.8727 2.5834 35 1 2.7190 5.6493 4.2390 36 1 -1.0675 6.4298 5.0470 37 1 -0.5340 6.0792 3.3857 38 1 0.3190 7.3053 4.3539 39 1 1.8064 6.5595 6.2803 40 1 0.3404 5.8171 6.9644 41 1 1.4571 3.6032 6.9551 42 1 2.9232 4.3455 6.2711 43 1 3.1177 5.8026 8.2676 44 1 1.6517 5.0607 8.9522 45 1 2.7672 2.8465 8.9434 46 1 4.2336 3.5878 8.2588 47 1 3.5558 4.9736 10.6250 48 1 4.9564 4.9934 13.6525 49 1 3.1739 4.6738 -0.7581 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176746923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:11 Heat of formation + Delta-G solvation = -36.316941 kcal Electronic energy + Delta-G solvation = -26077.791533 eV Core-core repulsion = 22357.892892 eV Total energy + Delta-G solvation = -3719.898641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.35222 -40.23292 -37.99709 -36.79947 -35.21935 -34.75785 -33.17888 -32.29168 -31.28165 -28.98083 -28.79526 -26.33390 -25.93295 -23.94810 -23.14087 -22.08346 -21.90176 -21.43018 -20.61001 -19.14308 -18.78634 -17.97772 -17.15512 -16.69517 -16.52860 -16.31165 -16.06950 -15.58689 -15.39240 -15.31377 -15.24950 -14.89699 -14.53412 -14.42700 -14.23047 -14.07117 -13.93028 -13.38247 -13.19357 -13.05010 -12.98731 -12.90282 -12.86673 -12.56258 -12.47668 -12.32362 -12.26081 -12.11844 -12.03873 -11.89682 -11.80692 -11.49609 -11.39266 -10.96148 -10.84962 -10.49241 -10.29978 -10.00369 -9.63575 -9.02722 -7.97823 -5.27189 -0.22142 0.46789 0.78236 1.45814 1.47066 1.57432 1.74486 1.76482 2.41250 2.54222 3.11191 3.35400 3.59975 3.75311 4.00829 4.05421 4.06996 4.10929 4.16258 4.21560 4.29655 4.34591 4.35938 4.43071 4.51519 4.60285 4.64193 4.65338 4.75767 4.79602 4.87300 4.93027 4.93415 4.98962 5.01708 5.03328 5.12870 5.18676 5.26120 5.30031 5.31941 5.45183 5.45383 5.52486 5.64961 6.25336 6.65588 6.89818 7.30864 7.37941 8.07211 8.31059 9.25940 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012922 B = 0.001812 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.341709 B =15452.415787 C =16617.863145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C 0.034 3.966 4 N -0.487 5.487 5 C 0.060 3.940 6 C -0.065 4.065 7 C 0.514 3.486 8 O -0.573 6.573 9 N -0.715 5.715 10 C 0.146 3.854 11 H 0.058 0.942 12 C -0.155 4.155 13 C -0.115 4.115 14 C -0.104 4.104 15 C -0.111 4.111 16 C 0.148 3.852 17 N -0.749 5.749 18 C -0.249 4.249 19 H 0.073 0.927 20 C -0.078 4.078 21 N -0.969 5.969 22 Si 0.976 3.024 23 H -0.268 1.268 24 H -0.289 1.289 25 H -0.291 1.291 26 C -0.258 4.258 27 S 0.142 5.858 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.034 0.966 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.146 0.854 34 H 0.122 0.878 35 H 0.414 0.586 36 H 0.072 0.928 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.010 0.990 46 H 0.018 0.982 47 H 0.374 0.626 48 H 0.252 0.748 49 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.539 0.571 -34.435 35.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.244 4.244 4 N -0.202 5.202 5 C -0.072 4.072 6 C -0.107 4.107 7 C 0.300 3.700 8 O -0.451 6.451 9 N -0.368 5.368 10 C 0.041 3.959 11 H 0.077 0.923 12 C -0.213 4.213 13 C -0.153 4.153 14 C -0.142 4.142 15 C -0.149 4.149 16 C 0.021 3.979 17 N -0.392 5.392 18 C -0.381 4.381 19 H 0.091 0.909 20 C -0.270 4.270 21 N -0.620 5.620 22 Si 0.805 3.195 23 H -0.192 1.192 24 H -0.216 1.216 25 H -0.218 1.218 26 C -0.397 4.397 27 S 0.398 5.602 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.164 0.836 34 H 0.140 0.860 35 H 0.251 0.749 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.028 0.972 46 H 0.036 0.964 47 H 0.206 0.794 48 H 0.061 0.939 49 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.322 -0.469 -35.179 35.936 hybrid contribution 0.877 0.465 1.989 2.223 sum -6.445 -0.005 -33.190 33.810 Atomic orbital electron populations 1.21719 0.93383 1.03337 1.01570 1.20345 0.96834 0.86742 1.05020 1.27471 1.03017 1.02737 0.91199 1.66000 1.14329 1.06915 1.32945 1.19919 1.01417 0.91400 0.94435 1.20368 0.96871 1.00725 0.92754 1.20803 0.89450 0.77918 0.81785 1.90707 1.34332 1.46246 1.73834 1.46012 1.17484 1.48618 1.24672 1.20872 0.86821 0.99010 0.89180 0.92324 1.22090 0.99617 0.98845 1.00727 1.21830 1.00897 0.98792 0.93760 1.21411 0.99793 0.98437 0.94584 1.21595 0.98975 0.97810 0.96551 1.20856 0.95375 0.96405 0.85218 1.42635 1.61597 1.20352 1.14568 1.19689 1.22980 0.98633 0.96805 0.90937 1.25624 1.03340 0.99225 0.98789 1.69820 1.51781 1.23367 1.16994 0.85033 0.77872 0.78310 0.78296 1.19201 1.21628 1.21840 1.27154 1.11714 1.05616 0.95168 1.83660 1.59849 1.05002 1.11728 0.92015 0.89487 0.94648 0.87131 0.89581 0.83583 0.85984 0.74869 0.90911 0.94187 0.90816 0.89447 0.89849 0.93156 0.91474 0.91609 0.92525 0.97160 0.96368 0.79373 0.93872 0.77660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.89 71.98 0.71 -1.39 16 2 C -0.05 -0.73 6.52 29.85 0.19 -0.54 16 3 C 0.03 0.68 6.64 88.52 0.59 1.27 16 4 N -0.49 -12.40 9.68 -179.40 -1.74 -14.14 16 5 C 0.06 1.23 5.64 41.52 0.23 1.47 16 6 C -0.07 -0.98 6.19 29.11 0.18 -0.80 16 7 C 0.51 11.28 7.76 87.66 0.68 11.96 16 8 O -0.57 -18.34 15.11 -3.01 -0.05 -18.38 16 9 N -0.71 -12.18 4.53 -442.53 -2.00 -14.18 16 10 C 0.15 2.82 2.58 44.99 0.12 2.94 16 11 H 0.06 1.50 7.58 -2.39 -0.02 1.48 16 12 C -0.15 -2.63 9.48 71.98 0.68 -1.94 16 13 C -0.11 -2.08 4.75 30.59 0.15 -1.94 16 14 C -0.10 -2.51 5.10 30.59 0.16 -2.35 16 15 C -0.11 -3.49 5.33 30.59 0.16 -3.32 16 16 C 0.15 6.15 6.26 86.38 0.54 6.70 16 17 N -0.75 -39.73 5.60 -343.45 -1.92 -41.66 16 18 C -0.25 -14.48 9.99 84.03 0.84 -13.64 16 19 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 21 N -0.97 -60.29 13.06 21.65 0.28 -60.00 16 22 Si 0.98 47.01 29.55 68.60 2.03 49.03 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 25 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 26 C -0.26 -3.86 11.07 66.77 0.74 -3.12 16 27 S 0.14 2.07 23.18 -56.49 -1.31 0.76 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.11 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.15 0.98 8.03 -2.39 -0.02 0.96 16 34 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.41 4.60 8.60 -92.71 -0.80 3.80 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.54 7.75 -2.38 -0.02 1.52 16 43 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 45 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 47 H 0.37 20.80 7.67 -92.71 -0.71 20.09 16 48 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 49 H 0.21 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -80.26 418.83 1.16 -79.10 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.57 Total: 28.30 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 6.44 Total: -8.82 kcal Atomic # 7 Polarization: -124.60 SS G_CDS: -5.38 Total: -129.98 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.05 Total: -18.38 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.31 Total: 0.76 kcal Total: -80.26 1.16 -79.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176746923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.783 kcal (2) G-P(sol) polarization free energy of solvation -80.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds