Wall clock time and date at job start Tue Mar 31 2020 22:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33640 * 122.75089 * 2 1 4 4 S 1.76195 * 107.92432 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28375 * 0.27465 * 4 3 2 6 6 C 1.50697 * 124.91613 * 179.84140 * 5 4 3 7 7 C 1.52997 * 109.47207 * 269.99829 * 6 5 4 8 8 C 1.50697 * 109.47207 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00319 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00090 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00192 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47268 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47183 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47225 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47225 * 179.97438 * 14 13 12 16 16 C 1.53007 * 109.47183 * 180.02562 * 15 14 13 17 17 N 1.46502 * 109.47156 * 180.02562 * 16 15 14 18 18 C 1.36936 * 119.99872 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00164 * 0.02562 * 18 17 16 20 20 C 1.38807 * 119.99847 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00432 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99937 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46868 * 90.00007 * 22 20 18 24 24 H 1.48497 * 109.46899 * 210.00079 * 22 20 18 25 25 H 1.48499 * 109.46980 * 330.00190 * 22 20 18 26 26 N 1.29028 * 110.16487 * 359.84202 * 5 4 3 27 27 H 1.09002 * 109.47152 * 269.73104 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.73205 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.73186 * 1 2 3 30 30 H 1.08001 * 126.03754 * 0.04014 * 3 2 1 31 31 H 1.09001 * 109.47564 * 30.00196 * 6 5 4 32 32 H 1.09005 * 109.47191 * 150.00231 * 6 5 4 33 33 H 1.08994 * 109.47304 * 300.00241 * 7 6 5 34 34 H 1.09005 * 109.46716 * 60.00111 * 7 6 5 35 35 H 0.97008 * 119.99701 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.47429 * 300.00095 * 11 10 8 37 37 H 1.09005 * 109.47224 * 60.00068 * 11 10 8 38 38 H 1.08993 * 109.46743 * 299.99957 * 12 11 10 39 39 H 1.09005 * 109.46815 * 59.99973 * 12 11 10 40 40 H 1.09001 * 109.47636 * 300.00327 * 13 12 11 41 41 H 1.09005 * 109.47102 * 60.00351 * 13 12 11 42 42 H 1.08994 * 109.47304 * 300.00340 * 14 13 12 43 43 H 1.08997 * 109.47011 * 60.00092 * 14 13 12 44 44 H 1.09001 * 109.47636 * 300.00422 * 15 14 13 45 45 H 1.09005 * 109.47102 * 60.00446 * 15 14 13 46 46 H 1.08993 * 109.46743 * 300.00160 * 16 15 14 47 47 H 1.08997 * 109.47110 * 60.00057 * 16 15 14 48 48 H 0.97001 * 119.99839 * 0.02562 * 17 16 15 49 49 H 0.96995 * 120.00491 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5073 -1.4589 8 6 5.7934 -3.6521 -1.4657 9 8 6.1887 -4.1183 -0.4182 10 7 6.2307 -4.1579 -2.6360 11 6 7.1829 -5.2711 -2.6427 12 6 7.5129 -5.6513 -4.0876 13 6 8.5079 -6.8135 -4.0946 14 6 8.8375 -7.1941 -5.5394 15 6 9.8329 -8.3559 -5.5464 16 6 10.1630 -8.7361 -6.9912 17 7 11.1157 -9.8490 -6.9979 18 6 11.5592 -10.3634 -8.1869 19 1 11.2070 -9.9485 -9.1198 20 6 12.4615 -11.4182 -8.1933 21 7 12.8905 -11.9242 -7.0565 22 14 13.0660 -12.1205 -9.8153 23 1 14.2901 -11.3965 -10.2427 24 1 13.3778 -13.5624 -9.6448 25 1 12.0106 -11.9609 -10.8477 26 7 2.2199 -1.1083 -0.0065 27 1 -0.3633 -0.0048 1.0277 28 1 -0.3633 -0.8876 -0.5180 29 1 -0.3633 0.8924 -0.5097 30 1 1.8392 2.1308 0.0006 31 1 5.3966 -1.8274 0.5003 32 1 4.0439 -2.9843 0.4958 33 1 3.9004 -2.8071 -1.9732 34 1 5.2530 -1.6501 -1.9688 35 1 5.9142 -3.7852 -3.4739 36 1 8.0958 -4.9715 -2.1279 37 1 6.7431 -6.1285 -2.1332 38 1 6.5999 -5.9511 -4.6019 39 1 7.9525 -4.7940 -4.5975 40 1 9.4209 -6.5134 -3.5803 41 1 8.0687 -7.6709 -3.5846 42 1 7.9244 -7.4944 -6.0533 43 1 9.2765 -6.3369 -6.0498 44 1 10.7460 -8.0552 -5.0325 45 1 9.3943 -9.2133 -5.0358 46 1 9.2501 -9.0367 -7.5053 47 1 10.6017 -7.8786 -7.5014 48 1 11.4318 -10.2218 -6.1601 49 1 13.5213 -12.6610 -7.0609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179025967.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:43 Heat of formation + Delta-G solvation = -44.429103 kcal Electronic energy + Delta-G solvation = -24393.697388 eV Core-core repulsion = 20673.446978 eV Total energy + Delta-G solvation = -3720.250411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.04722 -40.60405 -37.93085 -36.78466 -35.32374 -35.20350 -33.51547 -32.18002 -31.38276 -28.74246 -28.41616 -27.00582 -25.55467 -23.77632 -22.97706 -22.19901 -21.98031 -21.11248 -20.69518 -19.12013 -18.69726 -17.96414 -17.14865 -17.01287 -16.64386 -16.61461 -16.13694 -15.84666 -15.69152 -15.38258 -15.23182 -14.86545 -14.77667 -14.22180 -14.04323 -13.86921 -13.70987 -13.60334 -13.41245 -13.27104 -13.04144 -12.92878 -12.88061 -12.63963 -12.38219 -12.23274 -12.18360 -12.16035 -12.00805 -11.80097 -11.79225 -11.47218 -11.33745 -10.95138 -10.93508 -10.63835 -10.39280 -10.09188 -9.64839 -9.01679 -7.96461 -5.26171 -0.29718 0.40043 0.78076 1.46760 1.49281 1.57882 1.61448 1.74514 2.19592 2.55763 3.06983 3.37148 3.65623 3.74024 3.92463 4.01277 4.02455 4.06665 4.17938 4.25937 4.27882 4.31834 4.35679 4.39944 4.53774 4.60499 4.65617 4.75214 4.76696 4.79450 4.83257 4.87543 4.96561 4.98912 5.00115 5.03924 5.07480 5.17005 5.29863 5.35347 5.36507 5.46080 5.48648 5.54254 5.57226 6.26317 6.54691 6.77664 7.24438 7.31689 8.08800 8.31646 9.27519 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.041023 B = 0.001053 C = 0.001047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.377086 B =26582.832152 C =26741.040496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.044 3.956 3 C -0.263 4.263 4 S 0.148 5.852 5 C 0.040 3.960 6 C -0.026 4.026 7 C -0.123 4.123 8 C 0.511 3.489 9 O -0.586 6.586 10 N -0.718 5.718 11 C 0.119 3.881 12 C -0.117 4.117 13 C -0.114 4.114 14 C -0.103 4.103 15 C -0.117 4.117 16 C 0.148 3.852 17 N -0.752 5.752 18 C -0.251 4.251 19 H 0.076 0.924 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.977 3.023 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.268 1.268 26 N -0.500 5.500 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.202 0.798 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.418 0.582 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.019 0.981 47 H 0.020 0.980 48 H 0.373 0.627 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.951 32.935 14.473 44.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 C -0.402 4.402 4 S 0.403 5.597 5 C -0.237 4.237 6 C -0.068 4.068 7 C -0.164 4.164 8 C 0.299 3.701 9 O -0.466 6.466 10 N -0.371 5.371 11 C -0.005 4.005 12 C -0.155 4.155 13 C -0.152 4.152 14 C -0.141 4.141 15 C -0.155 4.155 16 C 0.022 3.978 17 N -0.394 5.394 18 C -0.383 4.383 19 H 0.094 0.906 20 C -0.269 4.269 21 N -0.623 5.623 22 Si 0.805 3.195 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.193 1.193 26 N -0.216 5.216 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.219 0.781 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.255 0.745 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.037 0.963 47 H 0.038 0.962 48 H 0.204 0.796 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -24.946 32.632 15.017 43.734 hybrid contribution -0.259 -0.888 -0.620 1.114 sum -25.204 31.743 14.397 43.014 Atomic orbital electron populations 1.20444 0.85656 1.04110 1.03556 1.20749 0.99504 0.86491 1.01971 1.27212 0.95055 1.04915 1.13032 1.83964 1.07265 1.01344 1.67124 1.27046 0.93859 0.99316 1.03488 1.19920 0.95789 0.93596 0.97472 1.21588 0.99589 0.97462 0.97770 1.20982 0.81589 0.84198 0.83335 1.90723 1.59899 1.62786 1.33186 1.45953 1.46216 1.35851 1.09056 1.21334 0.92226 0.88783 0.98138 1.21690 1.00294 0.99047 0.94486 1.21456 0.99265 0.98097 0.96404 1.21415 0.98517 0.97042 0.97175 1.21648 0.99565 0.98911 0.95414 1.20881 0.91368 0.89185 0.96399 1.42674 1.52491 1.38990 1.05265 1.19698 1.19662 1.11670 0.87272 0.90605 1.25628 1.00915 0.99916 1.00404 1.69825 1.37123 1.28928 1.26388 0.85095 0.78332 0.76972 0.79100 1.21190 1.21999 1.19272 1.66157 1.05330 1.33087 1.17035 0.90135 0.91217 0.88614 0.78136 0.88604 0.89719 0.87021 0.85983 0.74536 0.92434 0.92746 0.90090 0.89880 0.91918 0.92074 0.91289 0.91187 0.92728 0.92801 0.96321 0.96235 0.79597 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.31 71.24 0.73 0.11 16 2 C 0.04 0.58 6.74 41.52 0.28 0.86 16 3 C -0.26 -2.52 11.13 66.78 0.74 -1.78 16 4 S 0.15 1.47 23.18 -56.49 -1.31 0.16 16 5 C 0.04 0.57 6.64 88.52 0.59 1.16 16 6 C -0.03 -0.36 5.09 29.85 0.15 -0.21 16 7 C -0.12 -1.20 5.68 29.85 0.17 -1.03 16 8 C 0.51 8.27 7.83 87.66 0.69 8.95 16 9 O -0.59 -15.01 15.98 -3.04 -0.05 -15.06 16 10 N -0.72 -8.74 5.56 -463.05 -2.57 -11.31 16 11 C 0.12 1.84 5.67 86.38 0.49 2.33 16 12 C -0.12 -1.50 5.33 30.60 0.16 -1.34 16 13 C -0.11 -2.07 5.21 30.59 0.16 -1.91 16 14 C -0.10 -2.30 5.21 30.59 0.16 -2.14 16 15 C -0.12 -3.74 5.33 30.60 0.16 -3.58 16 16 C 0.15 6.05 6.26 86.38 0.54 6.59 16 17 N -0.75 -40.00 5.60 -343.45 -1.92 -41.92 16 18 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 19 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 20 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 21 N -0.97 -60.93 13.06 21.65 0.28 -60.64 16 22 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 23 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 26 N -0.50 -8.64 10.53 -179.40 -1.89 -10.53 16 27 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.33 8.12 -2.38 -0.02 0.31 16 30 H 0.20 0.73 8.06 -2.91 -0.02 0.71 16 31 H 0.10 1.25 8.10 -2.39 -0.02 1.23 16 32 H 0.08 1.46 8.10 -2.38 -0.02 1.44 16 33 H 0.11 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.42 2.34 8.47 -92.70 -0.79 1.55 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 48 H 0.37 21.01 7.67 -92.71 -0.71 20.30 16 49 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -77.16 421.64 0.34 -76.82 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -0.56 Total: 23.46 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 6.34 Total: -9.71 kcal Atomic # 7 Polarization: -118.30 SS G_CDS: -6.10 Total: -124.41 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.05 Total: -15.06 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.31 Total: 0.16 kcal Total: -77.16 0.34 -76.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179025967.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.390 kcal (2) G-P(sol) polarization free energy of solvation -77.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds