Wall clock time and date at job start Tue Mar 31 2020 22:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29021 * 124.91577 * 2 1 4 4 C 1.31787 * 117.12723 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75233 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46866 * 305.02631 * 5 4 3 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00169 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47364 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47469 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47473 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47343 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.46965 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.46990 * 180.02562 * 15 14 13 17 17 C 1.36940 * 120.00330 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99432 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00479 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99832 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00256 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46710 * 60.00475 * 21 19 17 23 23 H 1.48497 * 109.46885 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47011 * 299.99948 * 21 19 17 25 25 C 1.33639 * 114.49738 * 0.23162 * 4 3 2 26 26 S 1.70979 * 124.91810 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46911 * 90.00130 * 1 2 3 28 28 H 1.09004 * 109.47467 * 210.00086 * 1 2 3 29 29 H 1.09000 * 109.47576 * 330.00327 * 1 2 3 30 30 H 1.08993 * 109.47512 * 185.02753 * 5 4 3 31 31 H 1.09000 * 109.47247 * 65.02462 * 5 4 3 32 32 H 1.09000 * 109.47050 * 299.99952 * 6 5 4 33 33 H 1.09001 * 109.46801 * 60.00064 * 6 5 4 34 34 H 0.96996 * 119.99844 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46923 * 300.00119 * 10 9 7 36 36 H 1.09004 * 109.47042 * 59.99705 * 10 9 7 37 37 H 1.08992 * 109.47346 * 300.00533 * 11 10 9 38 38 H 1.09004 * 109.46785 * 60.00155 * 11 10 9 39 39 H 1.09004 * 109.46998 * 300.00836 * 12 11 10 40 40 H 1.09004 * 109.46862 * 60.00359 * 12 11 10 41 41 H 1.09000 * 109.46870 * 300.00218 * 13 12 11 42 42 H 1.09004 * 109.47108 * 60.00112 * 13 12 11 43 43 H 1.08992 * 109.47461 * 300.00218 * 14 13 12 44 44 H 1.09004 * 109.46930 * 59.99999 * 14 13 12 45 45 H 1.09000 * 109.47380 * 300.00295 * 15 14 13 46 46 H 1.09004 * 109.46976 * 60.00421 * 15 14 13 47 47 H 0.97004 * 120.00364 * 0.02562 * 16 15 14 48 48 H 0.96997 * 120.00284 * 179.97438 * 20 19 17 49 49 H 1.08002 * 126.03735 * 179.76609 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2333 2.9495 -1.1820 7 6 5.2125 4.0950 -1.1822 8 8 6.0640 4.1651 -0.3213 9 7 5.1413 5.0423 -2.1383 10 6 6.0935 6.1556 -2.1388 11 6 5.7961 7.0806 -3.3207 12 6 6.7901 8.2436 -3.3208 13 6 6.4923 9.1689 -4.5023 14 6 7.4868 10.3317 -4.5028 15 6 7.1893 11.2566 -5.6847 16 7 8.1419 12.3696 -5.6856 17 6 8.0697 13.3320 -6.6571 18 1 7.3102 13.2706 -7.4224 19 6 8.9719 14.3869 -6.6576 20 7 9.8972 14.4619 -5.7245 21 14 8.8738 15.6993 -7.9833 22 1 7.5464 16.3625 -7.9258 23 1 9.9414 16.7073 -7.7618 24 1 9.0559 15.0708 -9.3164 25 6 3.9354 -0.4006 -0.0039 26 16 2.4857 -1.4020 0.0006 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 5.5448 1.6353 -0.0894 31 1 4.4369 2.5834 0.9312 32 1 4.3272 2.3907 -2.1132 33 1 3.2192 3.3388 -1.0925 34 1 4.4601 4.9864 -2.8265 35 1 6.0000 6.7141 -1.2074 36 1 7.1077 5.7663 -2.2287 37 1 5.8898 6.5219 -4.2518 38 1 4.7819 7.4699 -3.2311 39 1 6.6959 8.8022 -2.3895 40 1 7.8044 7.8546 -3.4102 41 1 6.5863 8.6106 -5.4337 42 1 5.4780 9.5579 -4.4126 43 1 7.3934 10.8901 -3.5715 44 1 8.5009 9.9424 -4.5928 45 1 7.2831 10.6979 -6.6159 46 1 6.1752 11.6459 -5.5951 47 1 8.8239 12.4250 -4.9979 48 1 10.5279 15.1988 -5.7251 49 1 4.9546 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179735148.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:47 Heat of formation + Delta-G solvation = -21.314298 kcal Electronic energy + Delta-G solvation = -24450.984726 eV Core-core repulsion = 20731.736649 eV Total energy + Delta-G solvation = -3719.248077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.60081 -39.82735 -36.86302 -35.42656 -34.37343 -33.93048 -32.11087 -31.59056 -29.97345 -28.85170 -27.20402 -25.58160 -23.93781 -22.90939 -22.15941 -21.30240 -20.64030 -20.35827 -20.19273 -18.04586 -17.35072 -16.95034 -16.41350 -16.20200 -15.83969 -15.59651 -15.40980 -14.65396 -14.63828 -14.39020 -13.98988 -13.70195 -13.64293 -13.45339 -13.36024 -13.18060 -12.81636 -12.74563 -12.69078 -12.35494 -12.30779 -11.97314 -11.69882 -11.46939 -11.34029 -11.17417 -10.89600 -10.71001 -10.70626 -10.43894 -10.24152 -10.16323 -10.14671 -9.94746 -9.91902 -9.61823 -9.36077 -9.19492 -8.82326 -6.87076 -5.72210 -3.00696 0.18903 0.83819 1.21228 2.23499 2.35582 2.89475 3.46726 3.50479 3.51888 3.52075 4.26083 4.47078 4.51988 4.56351 4.65535 4.68556 4.74247 4.77191 4.81953 4.87498 4.98106 5.06348 5.15202 5.24973 5.28336 5.40232 5.41705 5.49031 5.56782 5.58339 5.65869 5.71670 5.75018 5.77876 5.96169 5.98101 6.14887 6.15671 6.35822 6.36391 6.43645 6.50656 6.93818 6.97874 7.17069 7.23538 7.73004 7.91986 8.47251 9.57706 10.17497 10.52029 11.50924 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.040522 B = 0.001046 C = 0.001029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.812381 B =26770.580861 C =27195.122743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.051 3.949 3 N -0.471 5.471 4 C 0.073 3.927 5 C -0.028 4.028 6 C -0.132 4.132 7 C 0.512 3.488 8 O -0.542 6.542 9 N -0.731 5.731 10 C 0.116 3.884 11 C -0.131 4.131 12 C -0.116 4.116 13 C -0.113 4.113 14 C -0.127 4.127 15 C 0.152 3.848 16 N -0.735 5.735 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.259 4.259 26 S 0.113 5.887 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.401 0.599 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.330 -37.238 12.925 43.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.227 4.227 3 N -0.186 5.186 4 C -0.059 4.059 5 C -0.068 4.068 6 C -0.173 4.173 7 C 0.298 3.702 8 O -0.419 6.419 9 N -0.383 5.383 10 C -0.007 4.007 11 C -0.168 4.168 12 C -0.154 4.154 13 C -0.151 4.151 14 C -0.165 4.165 15 C 0.024 3.976 16 N -0.379 5.379 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.584 5.584 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.397 4.397 26 S 0.367 5.633 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.235 0.765 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -19.220 -37.658 13.412 44.356 hybrid contribution 0.552 1.430 -0.901 1.778 sum -18.668 -36.228 12.511 42.632 Atomic orbital electron populations 1.20473 0.85022 1.04382 1.04076 1.27084 1.01860 0.90935 1.02820 1.66088 1.04498 1.31622 1.16421 1.20286 0.90083 0.94248 1.01265 1.19917 0.95834 0.91856 0.99211 1.21566 1.00071 0.95135 1.00489 1.20681 0.85179 0.83267 0.81067 1.90722 1.37190 1.76846 1.37139 1.46078 1.35630 1.25877 1.30742 1.21453 0.92853 0.87010 0.99376 1.21824 1.00703 0.96763 0.97559 1.21519 0.98815 0.95540 0.99576 1.21500 0.99694 0.96308 0.97627 1.21730 0.98919 0.96065 0.99754 1.20657 0.93248 0.88906 0.94739 1.42391 1.36470 1.25312 1.33747 1.19218 1.11938 1.01208 1.04774 0.91283 1.24743 0.98299 0.99129 0.98909 1.69654 1.20303 1.33258 1.35182 0.86256 0.76997 0.81533 0.81353 1.21274 1.21656 1.21283 1.26866 1.03294 0.95715 1.13864 1.84040 0.97978 1.12808 1.68473 0.89405 0.90026 0.89107 0.89332 0.89181 0.88995 0.87950 0.76512 0.91359 0.91391 0.91314 0.91289 0.91625 0.91638 0.92121 0.92101 0.92081 0.92093 0.96607 0.96597 0.78333 0.93489 0.80451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.46 36.01 0.38 0.13 16 2 C 0.05 0.32 7.39 -13.46 -0.10 0.22 16 3 N -0.47 -3.87 10.34 -8.06 -0.08 -3.95 16 4 C 0.07 0.55 6.08 -84.22 -0.51 0.04 16 5 C -0.03 -0.21 5.00 -27.88 -0.14 -0.35 16 6 C -0.13 -0.88 5.60 -27.88 -0.16 -1.04 16 7 C 0.51 4.78 7.83 -10.99 -0.09 4.69 16 8 O -0.54 -7.23 15.98 5.56 0.09 -7.14 16 9 N -0.73 -5.61 5.56 -60.29 -0.33 -5.95 16 10 C 0.12 1.03 5.67 -4.04 -0.02 1.01 16 11 C -0.13 -1.05 5.33 -26.74 -0.14 -1.19 16 12 C -0.12 -1.19 5.21 -26.74 -0.14 -1.33 16 13 C -0.11 -1.40 5.21 -26.73 -0.14 -1.54 16 14 C -0.13 -2.09 5.33 -26.73 -0.14 -2.23 16 15 C 0.15 3.18 6.26 -4.04 -0.03 3.16 16 16 N -0.74 -19.54 5.60 -59.91 -0.34 -19.88 16 17 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 20 N -0.94 -29.03 13.06 55.49 0.72 -28.31 16 21 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C -0.26 -1.60 11.07 29.12 0.32 -1.28 16 26 S 0.11 0.58 23.18 -107.50 -2.49 -1.91 16 27 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.62 7.99 -51.93 -0.41 0.21 16 31 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.40 2.00 8.47 -40.82 -0.35 1.66 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.38 10.64 7.67 -40.82 -0.31 10.33 16 48 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 49 H 0.18 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 421.30 15.07 6.35 6.35 Total: -1.00 -35.51 421.30 -10.91 -46.42 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -8.65 Total: 3.95 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -1.15 Total: -7.39 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -0.03 Total: -58.08 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: 0.09 Total: -7.14 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Atomic # 16 Polarization: 0.58 SS G_CDS: -2.49 Total: -1.91 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -35.51 -10.91 -46.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179735148.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.102 kcal (2) G-P(sol) polarization free energy of solvation -35.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds