Wall clock time and date at job start Tue Mar 31 2020 22:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29021 * 124.91577 * 2 1 4 4 C 1.31787 * 117.12723 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75233 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46866 * 305.02631 * 5 4 3 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00169 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47364 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47469 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47473 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47343 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.46965 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.46990 * 180.02562 * 15 14 13 17 17 C 1.36940 * 120.00330 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99432 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00479 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99832 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00256 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46710 * 60.00475 * 21 19 17 23 23 H 1.48497 * 109.46885 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47011 * 299.99948 * 21 19 17 25 25 C 1.33639 * 114.49738 * 0.23162 * 4 3 2 26 26 S 1.70979 * 124.91810 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46911 * 90.00130 * 1 2 3 28 28 H 1.09004 * 109.47467 * 210.00086 * 1 2 3 29 29 H 1.09000 * 109.47576 * 330.00327 * 1 2 3 30 30 H 1.08993 * 109.47512 * 185.02753 * 5 4 3 31 31 H 1.09000 * 109.47247 * 65.02462 * 5 4 3 32 32 H 1.09000 * 109.47050 * 299.99952 * 6 5 4 33 33 H 1.09001 * 109.46801 * 60.00064 * 6 5 4 34 34 H 0.96996 * 119.99844 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46923 * 300.00119 * 10 9 7 36 36 H 1.09004 * 109.47042 * 59.99705 * 10 9 7 37 37 H 1.08992 * 109.47346 * 300.00533 * 11 10 9 38 38 H 1.09004 * 109.46785 * 60.00155 * 11 10 9 39 39 H 1.09004 * 109.46998 * 300.00836 * 12 11 10 40 40 H 1.09004 * 109.46862 * 60.00359 * 12 11 10 41 41 H 1.09000 * 109.46870 * 300.00218 * 13 12 11 42 42 H 1.09004 * 109.47108 * 60.00112 * 13 12 11 43 43 H 1.08992 * 109.47461 * 300.00218 * 14 13 12 44 44 H 1.09004 * 109.46930 * 59.99999 * 14 13 12 45 45 H 1.09000 * 109.47380 * 300.00295 * 15 14 13 46 46 H 1.09004 * 109.46976 * 60.00421 * 15 14 13 47 47 H 0.97004 * 120.00364 * 0.02562 * 16 15 14 48 48 H 0.96997 * 120.00284 * 179.97438 * 20 19 17 49 49 H 1.08002 * 126.03735 * 179.76609 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2333 2.9495 -1.1820 7 6 5.2125 4.0950 -1.1822 8 8 6.0640 4.1651 -0.3213 9 7 5.1413 5.0423 -2.1383 10 6 6.0935 6.1556 -2.1388 11 6 5.7961 7.0806 -3.3207 12 6 6.7901 8.2436 -3.3208 13 6 6.4923 9.1689 -4.5023 14 6 7.4868 10.3317 -4.5028 15 6 7.1893 11.2566 -5.6847 16 7 8.1419 12.3696 -5.6856 17 6 8.0697 13.3320 -6.6571 18 1 7.3102 13.2706 -7.4224 19 6 8.9719 14.3869 -6.6576 20 7 9.8972 14.4619 -5.7245 21 14 8.8738 15.6993 -7.9833 22 1 7.5464 16.3625 -7.9258 23 1 9.9414 16.7073 -7.7618 24 1 9.0559 15.0708 -9.3164 25 6 3.9354 -0.4006 -0.0039 26 16 2.4857 -1.4020 0.0006 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 5.5448 1.6353 -0.0894 31 1 4.4369 2.5834 0.9312 32 1 4.3272 2.3907 -2.1132 33 1 3.2192 3.3388 -1.0925 34 1 4.4601 4.9864 -2.8265 35 1 6.0000 6.7141 -1.2074 36 1 7.1077 5.7663 -2.2287 37 1 5.8898 6.5219 -4.2518 38 1 4.7819 7.4699 -3.2311 39 1 6.6959 8.8022 -2.3895 40 1 7.8044 7.8546 -3.4102 41 1 6.5863 8.6106 -5.4337 42 1 5.4780 9.5579 -4.4126 43 1 7.3934 10.8901 -3.5715 44 1 8.5009 9.9424 -4.5928 45 1 7.2831 10.6979 -6.6159 46 1 6.1752 11.6459 -5.5951 47 1 8.8239 12.4250 -4.9979 48 1 10.5279 15.1988 -5.7251 49 1 4.9546 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179735148.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:46 Heat of formation + Delta-G solvation = -44.506538 kcal Electronic energy + Delta-G solvation = -24451.990417 eV Core-core repulsion = 20731.736649 eV Total energy + Delta-G solvation = -3720.253768 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15282 -40.50508 -37.93158 -36.77394 -35.30145 -34.90783 -33.52324 -32.32117 -31.38511 -29.30891 -28.39704 -26.50519 -25.38625 -23.75042 -23.16467 -22.21093 -21.99704 -21.11994 -20.64859 -19.11979 -18.52422 -17.97931 -17.15857 -16.96946 -16.65353 -16.58964 -16.13494 -15.95935 -15.59624 -15.37866 -15.24319 -14.91425 -14.61667 -14.32683 -14.09375 -13.94525 -13.85504 -13.50296 -13.42212 -13.05815 -13.01857 -12.91757 -12.82274 -12.62858 -12.45796 -12.39227 -12.20699 -12.01416 -12.00706 -11.80930 -11.79816 -11.47702 -11.34716 -10.92741 -10.90204 -10.61364 -10.36597 -10.09790 -9.63264 -9.01915 -7.96424 -5.26280 -0.24706 0.43349 0.76988 1.46514 1.50497 1.56793 1.62267 1.73800 2.23894 2.55832 3.12387 3.36929 3.70029 3.74469 3.94259 4.01230 4.02299 4.05817 4.19220 4.25030 4.30234 4.33832 4.36918 4.50702 4.59346 4.61170 4.64519 4.66909 4.69095 4.78481 4.86698 4.94036 4.97512 4.99238 5.02121 5.06373 5.09474 5.15766 5.28700 5.28884 5.35716 5.45944 5.48267 5.53380 5.56277 6.26139 6.54715 6.78291 7.24731 7.31490 8.08596 8.31543 9.27324 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.040522 B = 0.001046 C = 0.001029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.812381 B =26770.580861 C =27195.122743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.040 3.960 3 N -0.500 5.500 4 C 0.057 3.943 5 C -0.025 4.025 6 C -0.119 4.119 7 C 0.509 3.491 8 O -0.587 6.587 9 N -0.720 5.720 10 C 0.119 3.881 11 C -0.117 4.117 12 C -0.114 4.114 13 C -0.103 4.103 14 C -0.117 4.117 15 C 0.148 3.852 16 N -0.751 5.751 17 C -0.253 4.253 18 H 0.076 0.924 19 C -0.076 4.076 20 N -0.972 5.972 21 Si 0.978 3.022 22 H -0.276 1.276 23 H -0.293 1.293 24 H -0.276 1.276 25 C -0.267 4.267 26 S 0.144 5.856 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.417 0.583 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.373 0.627 48 H 0.252 0.748 49 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.229 -38.717 11.698 45.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.237 4.237 3 N -0.216 5.216 4 C -0.075 4.075 5 C -0.065 4.065 6 C -0.159 4.159 7 C 0.297 3.703 8 O -0.468 6.468 9 N -0.372 5.372 10 C -0.005 4.005 11 C -0.155 4.155 12 C -0.152 4.152 13 C -0.141 4.141 14 C -0.155 4.155 15 C 0.022 3.978 16 N -0.394 5.394 17 C -0.385 4.385 18 H 0.094 0.906 19 C -0.268 4.268 20 N -0.622 5.622 21 Si 0.806 3.194 22 H -0.202 1.202 23 H -0.219 1.219 24 H -0.202 1.202 25 C -0.406 4.406 26 S 0.399 5.601 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.253 0.747 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.204 0.796 48 H 0.061 0.939 49 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -21.185 -39.170 12.145 46.159 hybrid contribution 1.096 1.809 -0.502 2.174 sum -20.090 -37.361 11.644 43.989 Atomic orbital electron populations 1.20619 0.83151 1.05161 1.05091 1.27616 1.03154 0.91039 1.01934 1.66098 1.04885 1.32858 1.17802 1.20285 0.90114 0.94626 1.02446 1.19825 0.96033 0.92014 0.98657 1.21494 0.99283 0.94083 1.01071 1.21148 0.84875 0.83801 0.80458 1.90703 1.39192 1.77942 1.38968 1.45981 1.35520 1.25015 1.30683 1.21330 0.92636 0.87309 0.99199 1.21686 1.00509 0.95694 0.97606 1.21454 0.99428 0.95904 0.98405 1.21417 0.98696 0.95036 0.98993 1.21643 0.99893 0.96586 0.97394 1.20879 0.92068 0.88135 0.96744 1.42665 1.37259 1.26464 1.33019 1.19668 1.11809 1.01789 1.05225 0.90617 1.25636 0.98203 1.01596 1.01405 1.69822 1.21234 1.33986 1.37200 0.85156 0.77085 0.78483 0.78716 1.20198 1.21943 1.20197 1.27139 1.04642 0.95705 1.13136 1.83895 0.96861 1.11716 1.67654 0.88164 0.88183 0.89383 0.89365 0.91095 0.87045 0.87363 0.74654 0.92753 0.92553 0.89957 0.90089 0.92029 0.91938 0.91213 0.91264 0.92775 0.92737 0.96270 0.96296 0.79598 0.93903 0.78983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.46 71.24 0.75 0.37 16 2 C 0.04 0.45 7.39 88.52 0.65 1.11 16 3 N -0.50 -7.94 10.34 -179.40 -1.86 -9.79 16 4 C 0.06 0.84 6.08 41.52 0.25 1.09 16 5 C -0.02 -0.37 5.00 29.85 0.15 -0.23 16 6 C -0.12 -1.50 5.60 29.85 0.17 -1.33 16 7 C 0.51 9.33 7.83 87.66 0.69 10.01 16 8 O -0.59 -16.12 15.98 -3.04 -0.05 -16.17 16 9 N -0.72 -10.12 5.56 -463.05 -2.57 -12.69 16 10 C 0.12 2.01 5.67 86.38 0.49 2.50 16 11 C -0.12 -1.62 5.33 30.59 0.16 -1.46 16 12 C -0.11 -2.15 5.21 30.59 0.16 -1.99 16 13 C -0.10 -2.36 5.21 30.59 0.16 -2.20 16 14 C -0.12 -3.78 5.33 30.59 0.16 -3.62 16 15 C 0.15 6.11 6.26 86.38 0.54 6.65 16 16 N -0.75 -40.22 5.60 -343.46 -1.92 -42.15 16 17 C -0.25 -14.71 9.99 84.03 0.84 -13.87 16 18 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 19 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 20 N -0.97 -61.10 13.06 21.65 0.28 -60.81 16 21 Si 0.98 46.83 29.55 68.60 2.03 48.85 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 C -0.27 -3.08 11.07 66.78 0.74 -2.34 16 26 S 0.14 1.29 23.18 -56.49 -1.31 -0.02 16 27 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.10 0.08 8.14 -2.38 -0.02 0.06 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 1.28 7.99 -2.39 -0.02 1.26 16 31 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 32 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 1.27 8.08 -2.39 -0.02 1.25 16 34 H 0.42 3.21 8.47 -92.71 -0.79 2.42 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 45 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.37 21.12 7.67 -92.71 -0.71 20.41 16 48 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 49 H 0.19 1.43 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -76.87 421.30 0.41 -76.46 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.56 Total: 25.67 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 6.38 Total: -9.35 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -6.07 Total: -125.44 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.05 Total: -16.17 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -1.31 Total: -0.02 kcal Total: -76.87 0.41 -76.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179735148.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.953 kcal (2) G-P(sol) polarization free energy of solvation -76.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds