Wall clock time and date at job start Tue Mar 31 2020 22:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 C 1.53007 * 109.47143 * 90.00096 * 7 6 2 9 9 C 1.50700 * 109.47143 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00042 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99741 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99485 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.46821 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47182 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47305 * 180.02562 * 14 13 12 16 16 C 1.53002 * 109.47305 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.46834 * 180.02562 * 16 15 14 18 18 N 1.46506 * 109.46863 * 180.02562 * 17 16 15 19 19 C 1.36931 * 119.99908 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00178 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99687 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00288 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46808 * 59.99868 * 23 21 19 25 25 H 1.48492 * 109.47058 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46779 * 299.99849 * 23 21 19 27 27 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 28 28 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 29 29 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 30 30 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 32 32 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 33 33 H 1.08997 * 109.46409 * 300.00065 * 8 7 6 34 34 H 1.08999 * 109.46626 * 59.99718 * 8 7 6 35 35 H 0.96996 * 120.00024 * 359.97438 * 11 9 8 36 36 H 1.08997 * 109.47809 * 299.99342 * 12 11 9 37 37 H 1.08999 * 109.47559 * 60.00425 * 12 11 9 38 38 H 1.09000 * 109.47410 * 300.00092 * 13 12 11 39 39 H 1.08999 * 109.47050 * 60.00362 * 13 12 11 40 40 H 1.09000 * 109.47201 * 300.00437 * 14 13 12 41 41 H 1.08999 * 109.46656 * 60.00338 * 14 13 12 42 42 H 1.09002 * 109.47132 * 300.00845 * 15 14 13 43 43 H 1.09004 * 109.46722 * 60.00143 * 15 14 13 44 44 H 1.09000 * 109.47201 * 300.00433 * 16 15 14 45 45 H 1.08999 * 109.46656 * 60.00334 * 16 15 14 46 46 H 1.09000 * 109.47523 * 300.00165 * 17 16 15 47 47 H 1.08999 * 109.47284 * 60.00648 * 17 16 15 48 48 H 0.97005 * 119.99805 * 359.97438 * 18 17 16 49 49 H 0.96996 * 120.00135 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 6 1.5055 -3.0084 -1.4341 9 6 0.9608 -4.4135 -1.4321 10 8 0.7384 -4.9762 -0.3811 11 7 0.7219 -5.0452 -2.5985 12 6 0.1930 -6.4113 -2.5965 13 6 0.0136 -6.8908 -4.0384 14 6 -0.5382 -8.3178 -4.0364 15 6 -0.7169 -8.7976 -5.4782 16 6 -1.2682 -10.2248 -5.4762 17 6 -1.4463 -10.7047 -6.9181 18 7 -1.9747 -12.0711 -6.9162 19 6 -2.2163 -12.7134 -8.1012 20 1 -2.0178 -12.2125 -9.0372 21 6 -2.7175 -14.0078 -8.0994 22 7 -2.9599 -14.6181 -6.9587 23 14 -3.0478 -14.8838 -9.7159 24 1 -1.7843 -14.9893 -10.4889 25 1 -3.5755 -16.2446 -9.4427 26 1 -4.0457 -14.1138 -10.5012 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8902 0.5135 30 1 4.2059 1.8027 0.0057 31 1 2.3811 -3.1881 0.5260 32 1 0.7217 -2.5441 0.5181 33 1 0.8092 -2.3490 -1.9522 34 1 2.4686 -2.9931 -1.9444 35 1 0.9002 -4.5953 -3.4391 36 1 0.8897 -7.0701 -2.0783 37 1 -0.7701 -6.4274 -2.0863 38 1 -0.6834 -6.2320 -4.5564 39 1 0.9765 -6.8748 -4.5490 40 1 0.1591 -8.9764 -3.5185 41 1 -1.5010 -8.3343 -3.5257 42 1 -1.4140 -8.1390 -5.9964 43 1 0.2461 -8.7811 -5.9885 44 1 -0.5707 -10.8830 -4.9581 45 1 -2.2311 -10.2416 -4.9657 46 1 -2.1435 -10.0466 -7.4366 47 1 -0.4831 -10.6880 -7.4282 48 1 -2.1527 -12.5211 -6.0755 49 1 -3.3098 -15.5228 -6.9574 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179964782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:49 Heat of formation + Delta-G solvation = -20.971900 kcal Electronic energy + Delta-G solvation = -24650.061723 eV Core-core repulsion = 20930.828493 eV Total energy + Delta-G solvation = -3719.233230 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.55091 -39.98795 -36.92687 -35.50857 -34.83767 -33.97369 -32.04595 -31.47532 -30.04549 -28.38702 -26.86008 -25.50633 -24.35746 -23.46513 -22.21844 -21.35703 -20.66530 -20.43685 -19.36155 -18.65635 -17.46742 -16.96914 -16.52235 -16.32116 -16.07413 -15.59446 -15.34425 -14.71123 -14.65074 -14.25896 -14.07632 -13.75559 -13.51438 -13.43037 -13.16401 -13.10519 -13.04345 -12.87042 -12.69834 -12.58178 -12.36420 -12.01738 -11.73021 -11.38287 -11.37509 -11.19801 -10.92177 -10.73190 -10.72907 -10.47548 -10.28694 -10.26614 -10.14717 -9.97628 -9.75371 -9.63093 -9.44125 -9.23121 -8.83639 -6.88483 -5.73466 -3.01987 0.16724 0.83847 1.22601 2.24301 2.25492 2.78534 3.45729 3.49581 3.51121 3.71196 4.11648 4.36049 4.42353 4.50917 4.59228 4.63533 4.69862 4.72814 4.75993 4.93246 5.00379 5.08618 5.12301 5.21234 5.33811 5.35684 5.37761 5.47100 5.48096 5.55316 5.62857 5.68327 5.71318 5.79664 5.92832 5.94656 6.07191 6.12406 6.33061 6.33833 6.41650 6.48412 6.91845 6.95911 7.08058 7.19987 7.71750 7.82120 8.45911 9.56454 10.16081 10.50628 11.49619 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.040174 B = 0.001086 C = 0.001085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.800175 B =25768.145215 C =25810.637676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.062 3.938 3 N -0.468 5.468 4 C 0.019 3.981 5 S 0.119 5.881 6 C -0.219 4.219 7 C -0.026 4.026 8 C -0.136 4.136 9 C 0.512 3.488 10 O -0.539 6.539 11 N -0.731 5.731 12 C 0.116 3.884 13 C -0.131 4.131 14 C -0.116 4.116 15 C -0.113 4.113 16 C -0.127 4.127 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.199 0.801 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.080 34.458 15.710 40.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 N -0.182 5.182 4 C -0.279 4.279 5 S 0.373 5.627 6 C -0.340 4.340 7 C -0.066 4.066 8 C -0.177 4.177 9 C 0.298 3.702 10 O -0.416 6.416 11 N -0.382 5.382 12 C -0.007 4.007 13 C -0.169 4.169 14 C -0.155 4.155 15 C -0.151 4.151 16 C -0.165 4.165 17 C 0.024 3.976 18 N -0.379 5.379 19 C -0.372 4.372 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.216 0.784 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.235 0.765 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.662 34.041 16.308 40.493 hybrid contribution -0.862 -0.319 -1.122 1.450 sum 13.800 33.722 15.186 39.475 Atomic orbital electron populations 1.20415 0.86952 1.03620 1.03108 1.20285 0.98352 0.86131 1.02230 1.66202 1.05077 1.31621 1.15264 1.28310 0.95237 1.00073 1.04322 1.84134 1.07043 1.03681 1.67803 1.25725 0.95050 1.00615 1.12617 1.19762 1.02671 0.88212 0.95924 1.21680 1.03348 0.93801 0.98860 1.20587 0.77787 0.88072 0.83788 1.90736 1.51888 1.67849 1.31139 1.46078 1.66809 1.16725 1.08633 1.21466 0.99526 0.81842 0.97867 1.21830 1.02038 0.97986 0.95008 1.21519 1.01423 0.94409 0.98101 1.21499 1.01157 0.96945 0.95528 1.21731 1.00981 0.95083 0.98671 1.20659 0.96024 0.87496 0.93378 1.42388 1.77809 1.11336 1.06379 1.19215 1.35665 0.96078 0.86208 0.91280 1.24745 1.02220 0.97259 0.96840 1.69653 1.51178 1.13587 1.23960 0.86258 0.77976 0.78853 0.83061 1.21279 1.21651 1.21272 0.90507 0.90380 0.90521 0.78409 0.89597 0.88635 0.88424 0.88656 0.76486 0.91321 0.91303 0.91277 0.91298 0.91626 0.91615 0.92103 0.92114 0.92088 0.92080 0.96603 0.96607 0.78333 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.06 36.01 0.36 -0.07 16 2 C 0.06 0.45 6.74 -84.22 -0.57 -0.12 16 3 N -0.47 -3.82 10.53 -11.90 -0.13 -3.94 16 4 C 0.02 0.11 12.23 51.58 0.63 0.74 16 5 S 0.12 0.62 23.22 -107.50 -2.50 -1.87 16 6 C -0.22 -1.39 5.84 -35.92 -0.21 -1.60 16 7 C -0.03 -0.15 4.72 -27.88 -0.13 -0.29 16 8 C -0.14 -0.67 5.68 -27.88 -0.16 -0.83 16 9 C 0.51 4.10 7.83 -10.99 -0.09 4.01 16 10 O -0.54 -6.57 15.98 5.56 0.09 -6.48 16 11 N -0.73 -4.79 5.56 -60.30 -0.33 -5.13 16 12 C 0.12 0.93 5.67 -4.04 -0.02 0.91 16 13 C -0.13 -0.96 5.33 -26.73 -0.14 -1.11 16 14 C -0.12 -1.13 5.21 -26.73 -0.14 -1.27 16 15 C -0.11 -1.36 5.21 -26.73 -0.14 -1.49 16 16 C -0.13 -2.04 5.33 -26.73 -0.14 -2.19 16 17 C 0.15 3.14 6.26 -4.04 -0.03 3.11 16 18 N -0.74 -19.36 5.60 -59.91 -0.34 -19.70 16 19 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 23 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.35 6.71 -51.92 -0.35 0.00 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.20 0.50 8.06 -52.48 -0.42 0.08 16 31 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.10 0.61 6.71 -51.93 -0.35 0.26 16 33 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.40 1.54 8.47 -40.82 -0.35 1.19 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.38 10.55 7.67 -40.82 -0.31 10.23 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 418.57 15.07 6.31 6.31 Total: -1.00 -35.50 418.57 -10.72 -46.23 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -8.51 Total: 2.86 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.02 Total: -7.82 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.07 Total: -56.90 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: 0.09 Total: -6.48 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -2.50 Total: -1.87 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -35.50 -10.72 -46.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179964782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.255 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds