Wall clock time and date at job start Tue Mar 31 2020 22:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 C 1.53007 * 109.47143 * 90.00096 * 7 6 2 9 9 C 1.50700 * 109.47143 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00042 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99741 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99485 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.46821 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47182 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47305 * 180.02562 * 14 13 12 16 16 C 1.53002 * 109.47305 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.46834 * 180.02562 * 16 15 14 18 18 N 1.46506 * 109.46863 * 180.02562 * 17 16 15 19 19 C 1.36931 * 119.99908 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00178 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99687 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00288 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46808 * 59.99868 * 23 21 19 25 25 H 1.48492 * 109.47058 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46779 * 299.99849 * 23 21 19 27 27 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 28 28 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 29 29 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 30 30 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 32 32 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 33 33 H 1.08997 * 109.46409 * 300.00065 * 8 7 6 34 34 H 1.08999 * 109.46626 * 59.99718 * 8 7 6 35 35 H 0.96996 * 120.00024 * 359.97438 * 11 9 8 36 36 H 1.08997 * 109.47809 * 299.99342 * 12 11 9 37 37 H 1.08999 * 109.47559 * 60.00425 * 12 11 9 38 38 H 1.09000 * 109.47410 * 300.00092 * 13 12 11 39 39 H 1.08999 * 109.47050 * 60.00362 * 13 12 11 40 40 H 1.09000 * 109.47201 * 300.00437 * 14 13 12 41 41 H 1.08999 * 109.46656 * 60.00338 * 14 13 12 42 42 H 1.09002 * 109.47132 * 300.00845 * 15 14 13 43 43 H 1.09004 * 109.46722 * 60.00143 * 15 14 13 44 44 H 1.09000 * 109.47201 * 300.00433 * 16 15 14 45 45 H 1.08999 * 109.46656 * 60.00334 * 16 15 14 46 46 H 1.09000 * 109.47523 * 300.00165 * 17 16 15 47 47 H 1.08999 * 109.47284 * 60.00648 * 17 16 15 48 48 H 0.97005 * 119.99805 * 359.97438 * 18 17 16 49 49 H 0.96996 * 120.00135 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 6 1.5055 -3.0084 -1.4341 9 6 0.9608 -4.4135 -1.4321 10 8 0.7384 -4.9762 -0.3811 11 7 0.7219 -5.0452 -2.5985 12 6 0.1930 -6.4113 -2.5965 13 6 0.0136 -6.8908 -4.0384 14 6 -0.5382 -8.3178 -4.0364 15 6 -0.7169 -8.7976 -5.4782 16 6 -1.2682 -10.2248 -5.4762 17 6 -1.4463 -10.7047 -6.9181 18 7 -1.9747 -12.0711 -6.9162 19 6 -2.2163 -12.7134 -8.1012 20 1 -2.0178 -12.2125 -9.0372 21 6 -2.7175 -14.0078 -8.0994 22 7 -2.9599 -14.6181 -6.9587 23 14 -3.0478 -14.8838 -9.7159 24 1 -1.7843 -14.9893 -10.4889 25 1 -3.5755 -16.2446 -9.4427 26 1 -4.0457 -14.1138 -10.5012 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8902 0.5135 30 1 4.2059 1.8027 0.0057 31 1 2.3811 -3.1881 0.5260 32 1 0.7217 -2.5441 0.5181 33 1 0.8092 -2.3490 -1.9522 34 1 2.4686 -2.9931 -1.9444 35 1 0.9002 -4.5953 -3.4391 36 1 0.8897 -7.0701 -2.0783 37 1 -0.7701 -6.4274 -2.0863 38 1 -0.6834 -6.2320 -4.5564 39 1 0.9765 -6.8748 -4.5490 40 1 0.1591 -8.9764 -3.5185 41 1 -1.5010 -8.3343 -3.5257 42 1 -1.4140 -8.1390 -5.9964 43 1 0.2461 -8.7811 -5.9885 44 1 -0.5707 -10.8830 -4.9581 45 1 -2.2311 -10.2416 -4.9657 46 1 -2.1435 -10.0466 -7.4366 47 1 -0.4831 -10.6880 -7.4282 48 1 -2.1527 -12.5211 -6.0755 49 1 -3.3098 -15.5228 -6.9574 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179964782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:49 Heat of formation + Delta-G solvation = -44.188720 kcal Electronic energy + Delta-G solvation = -24651.068480 eV Core-core repulsion = 20930.828493 eV Total energy + Delta-G solvation = -3720.239987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05961 -40.58105 -37.92977 -36.78316 -35.39843 -35.26052 -33.51369 -32.12151 -31.39600 -29.07997 -27.94322 -26.13367 -25.59171 -24.38906 -23.37767 -22.19986 -21.99342 -21.11019 -19.80393 -19.11840 -19.08547 -18.01247 -17.15308 -16.98519 -16.70700 -16.63840 -16.27348 -15.82456 -15.60734 -15.37375 -15.23691 -14.84490 -14.59184 -14.39983 -13.96256 -13.90559 -13.59690 -13.48328 -13.41642 -13.37995 -13.07239 -13.01392 -12.90486 -12.62162 -12.41533 -12.38846 -12.20470 -12.00542 -11.81323 -11.79985 -11.79187 -11.47035 -11.33882 -10.94586 -10.92457 -10.60937 -10.20694 -10.08196 -9.66131 -9.01571 -7.96185 -5.25931 -0.26223 0.43069 0.79831 1.46805 1.50639 1.56965 1.63786 1.78460 2.23023 2.56012 3.33998 3.37183 3.63362 3.74341 3.91816 3.99229 4.01863 4.02951 4.20881 4.25341 4.28947 4.32203 4.34492 4.38994 4.60338 4.61393 4.65612 4.70743 4.74841 4.79399 4.87648 4.92781 4.98664 4.99797 5.03508 5.05560 5.07372 5.16986 5.29754 5.36072 5.37954 5.46638 5.49163 5.54128 5.57109 6.26346 6.56627 6.76350 7.26597 7.31793 8.08984 8.31849 9.27495 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.040174 B = 0.001086 C = 0.001085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.800175 B =25768.145215 C =25810.637676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.047 3.953 3 N -0.502 5.502 4 C 0.018 3.982 5 S 0.142 5.858 6 C -0.228 4.228 7 C -0.022 4.022 8 C -0.126 4.126 9 C 0.509 3.491 10 O -0.587 6.587 11 N -0.719 5.719 12 C 0.119 3.881 13 C -0.117 4.117 14 C -0.114 4.114 15 C -0.103 4.103 16 C -0.117 4.117 17 C 0.148 3.852 18 N -0.751 5.751 19 C -0.253 4.253 20 H 0.076 0.924 21 C -0.076 4.076 22 N -0.972 5.972 23 Si 0.977 3.023 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.276 1.276 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.225 0.775 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.417 0.583 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.019 0.981 47 H 0.019 0.981 48 H 0.373 0.627 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.071 36.127 14.289 41.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 N -0.217 5.217 4 C -0.279 4.279 5 S 0.397 5.603 6 C -0.349 4.349 7 C -0.062 4.062 8 C -0.166 4.166 9 C 0.297 3.703 10 O -0.467 6.467 11 N -0.372 5.372 12 C -0.005 4.005 13 C -0.155 4.155 14 C -0.152 4.152 15 C -0.141 4.141 16 C -0.155 4.155 17 C 0.022 3.978 18 N -0.394 5.394 19 C -0.385 4.385 20 H 0.094 0.906 21 C -0.268 4.268 22 N -0.622 5.622 23 Si 0.805 3.195 24 H -0.202 1.202 25 H -0.220 1.220 26 H -0.202 1.202 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.242 0.758 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.254 0.746 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.204 0.796 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.678 35.766 14.838 41.775 hybrid contribution -1.115 -0.788 -0.659 1.516 sum 14.564 34.979 14.179 40.455 Atomic orbital electron populations 1.20458 0.86254 1.03638 1.03745 1.20545 0.99129 0.86271 1.02471 1.66248 1.06191 1.32361 1.16863 1.28819 0.95076 1.01216 1.02832 1.84037 1.05978 1.03119 1.67196 1.25748 0.95822 1.00385 1.12945 1.19674 1.02007 0.87946 0.96551 1.21651 1.04551 0.91858 0.98520 1.21112 0.76963 0.88953 0.83270 1.90719 1.54028 1.69126 1.32852 1.45976 1.65893 1.16131 1.09176 1.21317 0.98577 0.82473 0.98093 1.21689 1.02852 0.96403 0.94569 1.21455 1.01417 0.95929 0.96416 1.21418 1.01440 0.94080 0.97209 1.21645 1.00812 0.97630 0.95431 1.20884 0.95589 0.84950 0.96426 1.42664 1.78129 1.13340 1.05265 1.19664 1.34917 0.96550 0.87335 0.90617 1.25633 1.02640 0.98190 1.00373 1.69821 1.52470 1.13700 1.26225 0.85162 0.78146 0.77232 0.78935 1.20215 1.21964 1.20206 0.89528 0.89840 0.91005 0.75827 0.90686 0.89392 0.86458 0.86810 0.74580 0.92694 0.92621 0.89984 0.90030 0.92026 0.91996 0.91236 0.91256 0.92776 0.92764 0.96289 0.96288 0.79597 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.06 71.24 0.72 -0.12 16 2 C 0.05 0.65 6.74 41.52 0.28 0.93 16 3 N -0.50 -7.79 10.53 -191.55 -2.02 -9.80 16 4 C 0.02 0.18 12.23 130.65 1.60 1.78 16 5 S 0.14 1.29 23.22 -56.49 -1.31 -0.02 16 6 C -0.23 -2.68 5.84 24.64 0.14 -2.53 16 7 C -0.02 -0.25 4.72 29.85 0.14 -0.10 16 8 C -0.13 -1.02 5.68 29.85 0.17 -0.85 16 9 C 0.51 7.64 7.83 87.66 0.69 8.32 16 10 O -0.59 -14.43 15.98 -3.02 -0.05 -14.48 16 11 N -0.72 -8.14 5.56 -463.07 -2.57 -10.71 16 12 C 0.12 1.78 5.67 86.38 0.49 2.27 16 13 C -0.12 -1.44 5.33 30.60 0.16 -1.28 16 14 C -0.11 -2.03 5.21 30.59 0.16 -1.87 16 15 C -0.10 -2.27 5.21 30.59 0.16 -2.11 16 16 C -0.12 -3.70 5.33 30.60 0.16 -3.54 16 17 C 0.15 6.01 6.26 86.38 0.54 6.55 16 18 N -0.75 -39.84 5.60 -343.44 -1.92 -41.76 16 19 C -0.25 -14.58 9.99 84.03 0.84 -13.74 16 20 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 21 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 22 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 23 Si 0.98 46.54 29.55 68.60 2.03 48.56 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 27 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 0.72 6.71 -2.38 -0.02 0.70 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.23 0.70 8.06 -2.91 -0.02 0.67 16 31 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 32 H 0.09 1.12 6.71 -2.39 -0.02 1.11 16 33 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.42 2.01 8.47 -92.71 -0.79 1.22 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.37 20.93 7.67 -92.70 -0.71 20.22 16 49 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -77.00 418.57 0.60 -76.40 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.56 Total: 22.54 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 6.72 Total: -10.30 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -6.23 Total: -122.70 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.05 Total: -14.48 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -1.31 Total: -0.02 kcal Total: -77.00 0.60 -76.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179964782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.213 kcal (2) G-P(sol) polarization free energy of solvation -77.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds