Wall clock time and date at job start Tue Mar 31 2020 22:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.46915 * 2 1 4 4 N 1.29033 * 124.91395 * 89.99930 * 3 2 1 5 5 C 1.31778 * 117.12316 * 179.97438 * 4 3 2 6 6 C 1.50706 * 122.74885 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47294 * 305.03329 * 6 5 4 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99846 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47273 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47217 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.46886 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.46811 * 180.02562 * 15 14 13 17 17 C 1.36937 * 119.99946 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00046 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00304 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00281 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99872 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47299 * 89.99618 * 21 19 17 23 23 H 1.48497 * 109.47329 * 209.99551 * 21 19 17 24 24 H 1.48498 * 109.47161 * 329.99697 * 21 19 17 25 25 C 1.33638 * 114.50319 * 0.23857 * 5 4 3 26 26 S 1.70972 * 124.91947 * 270.00049 * 3 2 1 27 27 H 1.09004 * 109.47036 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47351 * 299.99775 * 1 2 3 29 29 H 1.09003 * 109.47252 * 59.99674 * 1 2 3 30 30 H 1.08993 * 109.47012 * 240.00274 * 2 1 3 31 31 H 1.08995 * 109.46981 * 120.00103 * 2 1 3 32 32 H 1.09001 * 109.46953 * 65.02771 * 6 5 4 33 33 H 1.09000 * 109.47318 * 185.02369 * 6 5 4 34 34 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47703 * 299.99475 * 10 9 7 36 36 H 1.09001 * 109.47464 * 60.00214 * 10 9 7 37 37 H 1.09001 * 109.47002 * 299.99701 * 11 10 9 38 38 H 1.08992 * 109.47533 * 59.99650 * 11 10 9 39 39 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 40 40 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 41 41 H 1.09001 * 109.47364 * 300.00445 * 13 12 11 42 42 H 1.09004 * 109.46785 * 59.99944 * 13 12 11 43 43 H 1.08998 * 109.47387 * 299.99917 * 14 13 12 44 44 H 1.08993 * 109.46940 * 60.00885 * 14 13 12 45 45 H 1.09001 * 109.47372 * 300.00594 * 15 14 13 46 46 H 1.09004 * 109.47107 * 60.00295 * 15 14 13 47 47 H 0.97002 * 120.00387 * 359.97438 * 16 15 14 48 48 H 0.97001 * 120.00577 * 179.97438 * 20 19 17 49 49 H 1.08004 * 126.03923 * 179.76379 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2784 2.1171 1.0581 5 6 2.7141 3.3479 0.8795 6 6 3.0401 4.2716 2.0248 7 6 1.8449 4.3834 2.9358 8 8 0.8283 3.7735 2.6801 9 7 1.9054 5.1620 4.0343 10 6 0.7433 5.2711 4.9196 11 6 1.0744 6.2088 6.0825 12 6 -0.1390 6.3223 7.0074 13 6 0.1922 7.2595 8.1706 14 6 -1.0215 7.3734 9.0952 15 6 -0.6904 8.3111 10.2580 16 7 -1.8523 8.4198 11.1437 17 6 -1.7908 9.2107 12.2598 18 1 -0.8856 9.7542 12.4874 19 6 -2.8918 9.3141 13.0988 20 7 -2.8326 10.0740 14.1718 21 14 -4.4572 8.3737 12.7056 22 1 -4.4054 7.0357 13.3479 23 1 -5.6292 9.1254 13.2218 24 1 -4.5814 8.2122 11.2347 25 6 2.8378 3.7118 -0.4005 26 16 2.3585 2.3436 -1.4019 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8867 3.8728 2.5835 33 1 3.2938 5.2576 1.6355 34 1 2.7184 5.6501 4.2386 35 1 -0.1032 5.6698 4.3607 36 1 0.4896 4.2853 5.3093 37 1 1.9208 5.8097 6.6414 38 1 1.3284 7.1947 5.6933 39 1 -0.9858 6.7212 6.4488 40 1 -0.3927 5.3362 7.3967 41 1 1.0388 6.8603 8.7291 42 1 0.4460 8.2456 7.7816 43 1 -1.8678 7.7729 8.5365 44 1 -1.2757 6.3875 9.4842 45 1 0.1561 7.9121 10.8169 46 1 -0.4364 9.2971 9.8687 47 1 -2.6654 7.9320 10.9392 48 1 -3.6021 10.1465 14.7579 49 1 3.1737 4.6740 -0.7579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180356797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:56 Heat of formation + Delta-G solvation = -12.512841 kcal Electronic energy + Delta-G solvation = -24932.872529 eV Core-core repulsion = 21214.006111 eV Total energy + Delta-G solvation = -3718.866418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.72390 -39.42617 -36.89856 -35.51420 -34.73039 -34.02181 -32.18695 -31.54030 -30.33149 -28.73484 -26.99685 -25.77700 -24.09027 -22.55413 -21.99709 -21.32133 -20.84200 -20.59996 -20.07238 -18.24967 -17.47532 -17.21206 -16.43211 -16.24834 -15.78673 -15.49271 -15.07149 -14.84557 -14.56781 -14.47878 -14.11564 -13.98339 -13.75976 -13.45555 -13.25195 -13.18497 -12.73075 -12.67385 -12.51634 -12.40228 -12.09761 -11.88178 -11.74385 -11.60048 -11.56555 -11.43962 -11.00113 -10.84990 -10.77741 -10.39246 -10.35793 -10.14918 -10.04510 -9.94184 -9.76439 -9.55917 -9.36775 -9.13970 -8.85935 -7.19202 -5.74122 -3.09118 0.29338 0.94847 1.30466 2.30325 2.38125 2.95432 3.39975 3.43177 3.47370 3.55346 4.23234 4.47857 4.52565 4.55924 4.62114 4.64753 4.71167 4.74600 4.76478 4.87765 4.91263 5.08164 5.17224 5.21019 5.28784 5.33889 5.36488 5.50534 5.51232 5.57390 5.59704 5.65945 5.68966 5.80137 5.82700 5.88952 6.03983 6.12093 6.14004 6.23387 6.26419 6.39721 6.80816 6.85015 7.16087 7.40008 7.94634 8.03042 8.45331 9.25061 9.97721 10.18137 11.44481 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026072 B = 0.001244 C = 0.001202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.701182 B =22497.289578 C =23286.266611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.058 3.942 4 N -0.447 5.447 5 C 0.089 3.911 6 C -0.067 4.067 7 C 0.515 3.485 8 O -0.520 6.520 9 N -0.734 5.734 10 C 0.119 3.881 11 C -0.130 4.130 12 C -0.117 4.117 13 C -0.113 4.113 14 C -0.131 4.131 15 C 0.156 3.844 16 N -0.759 5.759 17 C -0.244 4.244 18 H 0.090 0.910 19 C 0.003 3.997 20 N -0.936 5.936 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.260 4.260 26 S 0.111 5.889 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.400 0.600 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.025 0.975 46 H 0.024 0.976 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.161 -18.245 -36.919 44.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.222 4.222 4 N -0.160 5.160 5 C -0.044 4.044 6 C -0.110 4.110 7 C 0.299 3.701 8 O -0.395 6.395 9 N -0.387 5.387 10 C -0.004 4.004 11 C -0.168 4.168 12 C -0.155 4.155 13 C -0.151 4.151 14 C -0.169 4.169 15 C 0.029 3.971 16 N -0.404 5.404 17 C -0.374 4.374 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.584 5.584 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.399 4.399 26 S 0.367 5.633 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.234 0.766 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.042 0.958 47 H 0.193 0.807 48 H 0.069 0.931 49 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 15.348 -18.971 -37.510 44.748 hybrid contribution -0.553 0.409 0.684 0.970 sum 14.795 -18.562 -36.826 43.813 Atomic orbital electron populations 1.21773 0.93271 1.02580 1.02996 1.20231 0.96978 0.87412 1.04151 1.27091 1.02736 1.01770 0.90556 1.65983 1.13161 1.05579 1.31298 1.19521 1.00542 0.91403 0.92963 1.20233 0.98026 0.99184 0.93553 1.20294 0.89423 0.78995 0.81354 1.90753 1.32149 1.43945 1.72609 1.46015 1.17476 1.49348 1.25827 1.21411 0.88106 1.00309 0.90594 1.21820 0.99698 0.99461 0.95836 1.21519 0.97083 1.00571 0.96299 1.21490 0.98533 0.99348 0.95759 1.21784 0.97733 1.00406 0.96950 1.20638 0.90620 0.96125 0.89714 1.42749 1.12368 1.57332 1.27966 1.19096 1.00205 1.19869 0.98246 0.89268 1.24677 0.97820 0.99739 0.97045 1.69704 1.30633 1.42783 1.15278 0.86521 0.84336 0.79864 0.77679 1.21076 1.21713 1.20343 1.26756 1.12916 1.04488 0.95723 1.83934 1.60633 1.05654 1.13111 0.91349 0.91553 0.92478 0.89721 0.88736 0.87081 0.87192 0.76610 0.91548 0.91463 0.91218 0.91251 0.91704 0.91672 0.91883 0.91916 0.92160 0.92132 0.95703 0.95767 0.80717 0.93097 0.80542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.54 16 2 C -0.05 -0.28 6.52 -27.88 -0.18 -0.47 16 3 C 0.06 0.49 6.64 -13.45 -0.09 0.40 16 4 N -0.45 -4.85 9.68 -8.05 -0.08 -4.93 16 5 C 0.09 0.79 5.64 -84.22 -0.47 0.32 16 6 C -0.07 -0.42 6.19 -29.03 -0.18 -0.60 16 7 C 0.51 4.95 7.80 -10.99 -0.09 4.87 16 8 O -0.52 -7.50 15.45 5.56 0.09 -7.41 16 9 N -0.73 -5.35 5.56 -60.29 -0.33 -5.68 16 10 C 0.12 1.03 5.67 -4.04 -0.02 1.00 16 11 C -0.13 -0.98 5.33 -26.73 -0.14 -1.12 16 12 C -0.12 -1.11 5.21 -26.73 -0.14 -1.25 16 13 C -0.11 -1.30 5.21 -26.73 -0.14 -1.44 16 14 C -0.13 -1.99 5.33 -26.73 -0.14 -2.13 16 15 C 0.16 3.09 6.26 -4.04 -0.03 3.07 16 16 N -0.76 -18.82 5.41 -59.91 -0.32 -19.15 16 17 C -0.24 -7.16 10.47 -15.06 -0.16 -7.32 16 18 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 20 N -0.94 -29.98 13.97 55.49 0.78 -29.20 16 21 Si 0.89 22.64 27.74 -169.99 -4.71 17.92 16 22 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 25 C -0.26 -1.82 11.07 29.12 0.32 -1.50 16 26 S 0.11 0.74 23.18 -107.50 -2.49 -1.75 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.11 0.34 8.03 -51.93 -0.42 -0.08 16 34 H 0.40 1.65 8.47 -40.82 -0.35 1.30 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.36 8.68 5.53 -40.82 -0.23 8.46 16 48 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 49 H 0.18 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 417.46 15.07 6.29 6.29 Total: -1.00 -37.59 417.46 -10.59 -48.18 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -8.61 Total: 2.45 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -1.19 Total: -6.73 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.04 Total: -58.96 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.09 Total: -7.41 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.71 Total: 17.92 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.49 Total: -1.75 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -37.59 -10.59 -48.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180356797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.668 kcal (2) G-P(sol) polarization free energy of solvation -37.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds