Wall clock time and date at job start Tue Mar 31 2020 22:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.46915 * 2 1 4 4 N 1.29033 * 124.91395 * 89.99930 * 3 2 1 5 5 C 1.31778 * 117.12316 * 179.97438 * 4 3 2 6 6 C 1.50706 * 122.74885 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47294 * 305.03329 * 6 5 4 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99846 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47273 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47217 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.46886 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.46811 * 180.02562 * 15 14 13 17 17 C 1.36937 * 119.99946 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00046 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00304 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00281 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99872 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47299 * 89.99618 * 21 19 17 23 23 H 1.48497 * 109.47329 * 209.99551 * 21 19 17 24 24 H 1.48498 * 109.47161 * 329.99697 * 21 19 17 25 25 C 1.33638 * 114.50319 * 0.23857 * 5 4 3 26 26 S 1.70972 * 124.91947 * 270.00049 * 3 2 1 27 27 H 1.09004 * 109.47036 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47351 * 299.99775 * 1 2 3 29 29 H 1.09003 * 109.47252 * 59.99674 * 1 2 3 30 30 H 1.08993 * 109.47012 * 240.00274 * 2 1 3 31 31 H 1.08995 * 109.46981 * 120.00103 * 2 1 3 32 32 H 1.09001 * 109.46953 * 65.02771 * 6 5 4 33 33 H 1.09000 * 109.47318 * 185.02369 * 6 5 4 34 34 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47703 * 299.99475 * 10 9 7 36 36 H 1.09001 * 109.47464 * 60.00214 * 10 9 7 37 37 H 1.09001 * 109.47002 * 299.99701 * 11 10 9 38 38 H 1.08992 * 109.47533 * 59.99650 * 11 10 9 39 39 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 40 40 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 41 41 H 1.09001 * 109.47364 * 300.00445 * 13 12 11 42 42 H 1.09004 * 109.46785 * 59.99944 * 13 12 11 43 43 H 1.08998 * 109.47387 * 299.99917 * 14 13 12 44 44 H 1.08993 * 109.46940 * 60.00885 * 14 13 12 45 45 H 1.09001 * 109.47372 * 300.00594 * 15 14 13 46 46 H 1.09004 * 109.47107 * 60.00295 * 15 14 13 47 47 H 0.97002 * 120.00387 * 359.97438 * 16 15 14 48 48 H 0.97001 * 120.00577 * 179.97438 * 20 19 17 49 49 H 1.08004 * 126.03923 * 179.76379 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2784 2.1171 1.0581 5 6 2.7141 3.3479 0.8795 6 6 3.0401 4.2716 2.0248 7 6 1.8449 4.3834 2.9358 8 8 0.8283 3.7735 2.6801 9 7 1.9054 5.1620 4.0343 10 6 0.7433 5.2711 4.9196 11 6 1.0744 6.2088 6.0825 12 6 -0.1390 6.3223 7.0074 13 6 0.1922 7.2595 8.1706 14 6 -1.0215 7.3734 9.0952 15 6 -0.6904 8.3111 10.2580 16 7 -1.8523 8.4198 11.1437 17 6 -1.7908 9.2107 12.2598 18 1 -0.8856 9.7542 12.4874 19 6 -2.8918 9.3141 13.0988 20 7 -2.8326 10.0740 14.1718 21 14 -4.4572 8.3737 12.7056 22 1 -4.4054 7.0357 13.3479 23 1 -5.6292 9.1254 13.2218 24 1 -4.5814 8.2122 11.2347 25 6 2.8378 3.7118 -0.4005 26 16 2.3585 2.3436 -1.4019 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8867 3.8728 2.5835 33 1 3.2938 5.2576 1.6355 34 1 2.7184 5.6501 4.2386 35 1 -0.1032 5.6698 4.3607 36 1 0.4896 4.2853 5.3093 37 1 1.9208 5.8097 6.6414 38 1 1.3284 7.1947 5.6933 39 1 -0.9858 6.7212 6.4488 40 1 -0.3927 5.3362 7.3967 41 1 1.0388 6.8603 8.7291 42 1 0.4460 8.2456 7.7816 43 1 -1.8678 7.7729 8.5365 44 1 -1.2757 6.3875 9.4842 45 1 0.1561 7.9121 10.8169 46 1 -0.4364 9.2971 9.8687 47 1 -2.6654 7.9320 10.9392 48 1 -3.6021 10.1465 14.7579 49 1 3.1737 4.6740 -0.7579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180356797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:55 Heat of formation + Delta-G solvation = -38.488107 kcal Electronic energy + Delta-G solvation = -24933.998901 eV Core-core repulsion = 21214.006111 eV Total energy + Delta-G solvation = -3719.992790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.32838 -40.09890 -37.97370 -36.81188 -35.30403 -35.22848 -33.70819 -32.49315 -31.58479 -29.43700 -28.12370 -26.35120 -25.49557 -23.64823 -22.92598 -22.25040 -22.09798 -21.32901 -20.61942 -19.62136 -18.80838 -17.85303 -17.12635 -16.97458 -16.61859 -16.42243 -16.23857 -15.82001 -15.68450 -15.45668 -15.24021 -14.89927 -14.66384 -14.53032 -14.19062 -14.14937 -13.94629 -13.48294 -13.36041 -13.31439 -13.08680 -12.96552 -12.65892 -12.57144 -12.47601 -12.34592 -12.08732 -12.04847 -11.89029 -11.86492 -11.81090 -11.53873 -11.34760 -10.98240 -10.91490 -10.52239 -10.31573 -10.07579 -9.65687 -9.31793 -8.05267 -5.39071 -0.23828 0.45325 0.77415 1.36551 1.40144 1.47757 1.68501 1.73486 2.35871 2.46769 3.09244 3.26064 3.56624 3.72512 3.89613 4.01117 4.01703 4.09451 4.19295 4.23767 4.24176 4.28701 4.30923 4.34720 4.49827 4.58149 4.61005 4.64381 4.74215 4.77407 4.85059 4.92618 4.96809 4.99347 5.01873 5.04138 5.14102 5.17307 5.27419 5.29020 5.34074 5.48503 5.52256 5.54958 5.73205 6.19342 6.59982 6.86896 7.05863 7.32108 7.82825 8.02009 9.16323 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026072 B = 0.001244 C = 0.001202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.701182 B =22497.289578 C =23286.266611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C 0.035 3.965 4 N -0.488 5.488 5 C 0.059 3.941 6 C -0.061 4.061 7 C 0.509 3.491 8 O -0.576 6.576 9 N -0.720 5.720 10 C 0.123 3.877 11 C -0.117 4.117 12 C -0.114 4.114 13 C -0.105 4.105 14 C -0.121 4.121 15 C 0.150 3.850 16 N -0.763 5.763 17 C -0.242 4.242 18 H 0.055 0.945 19 C -0.064 4.064 20 N -0.984 5.984 21 Si 0.959 3.041 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.252 1.252 25 C -0.259 4.259 26 S 0.140 5.860 27 H 0.087 0.913 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.147 0.853 34 H 0.418 0.582 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.023 0.977 46 H 0.022 0.978 47 H 0.366 0.634 48 H 0.259 0.741 49 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.931 -18.902 -39.423 46.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.244 4.244 4 N -0.202 5.202 5 C -0.073 4.073 6 C -0.103 4.103 7 C 0.296 3.704 8 O -0.455 6.455 9 N -0.373 5.373 10 C -0.001 4.001 11 C -0.155 4.155 12 C -0.152 4.152 13 C -0.143 4.143 14 C -0.159 4.159 15 C 0.024 3.976 16 N -0.409 5.409 17 C -0.373 4.373 18 H 0.073 0.927 19 C -0.256 4.256 20 N -0.634 5.634 21 Si 0.785 3.215 22 H -0.203 1.203 23 H -0.219 1.219 24 H -0.177 1.177 25 C -0.398 4.398 26 S 0.395 5.605 27 H 0.106 0.894 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.107 0.893 32 H 0.147 0.853 33 H 0.165 0.835 34 H 0.255 0.745 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.041 0.959 46 H 0.040 0.960 47 H 0.199 0.801 48 H 0.068 0.932 49 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 16.181 -19.623 -40.045 47.439 hybrid contribution -0.695 0.668 1.449 1.740 sum 15.486 -18.955 -38.596 45.703 Atomic orbital electron populations 1.21730 0.93538 1.03352 1.01517 1.20339 0.96675 0.86697 1.05137 1.27480 1.02967 1.02745 0.91170 1.66007 1.14397 1.06936 1.32879 1.19950 1.01448 0.91437 0.94459 1.20355 0.96658 1.00772 0.92546 1.20950 0.89659 0.78075 0.81760 1.90730 1.34478 1.46286 1.74025 1.45898 1.17795 1.48727 1.24898 1.21265 0.88346 0.99533 0.90982 1.21690 0.99012 0.99880 0.94896 1.21454 0.98011 0.99818 0.95892 1.21422 0.96923 1.00349 0.95655 1.21705 0.99493 0.99008 0.95696 1.20871 0.88969 0.97255 0.90503 1.42808 1.14112 1.56589 1.27398 1.19099 0.98987 1.19572 0.99626 0.92666 1.25553 1.01795 1.01239 0.96975 1.69887 1.31830 1.44940 1.16757 0.85357 0.79067 0.78189 0.78865 1.20288 1.21942 1.17691 1.27174 1.11735 1.05609 0.95249 1.83740 1.59775 1.05107 1.11847 0.89441 0.94638 0.92213 0.87153 0.89287 0.85286 0.83504 0.74462 0.92948 0.93288 0.90070 0.89840 0.91873 0.91988 0.91277 0.91225 0.92051 0.91982 0.95916 0.95969 0.80117 0.93237 0.77669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 71.98 0.71 -1.08 16 2 C -0.05 -0.58 6.52 29.85 0.19 -0.38 16 3 C 0.03 0.59 6.64 88.52 0.59 1.18 16 4 N -0.49 -10.72 9.68 -179.40 -1.74 -12.46 16 5 C 0.06 1.00 5.64 41.52 0.23 1.24 16 6 C -0.06 -0.66 6.19 29.10 0.18 -0.48 16 7 C 0.51 9.42 7.80 87.66 0.68 10.10 16 8 O -0.58 -17.12 15.45 -3.04 -0.05 -17.17 16 9 N -0.72 -9.32 5.56 -463.06 -2.57 -11.89 16 10 C 0.12 1.99 5.67 86.38 0.49 2.48 16 11 C -0.12 -1.46 5.33 30.60 0.16 -1.29 16 12 C -0.11 -1.92 5.21 30.59 0.16 -1.76 16 13 C -0.11 -2.16 5.21 30.59 0.16 -2.00 16 14 C -0.12 -3.44 5.33 30.60 0.16 -3.27 16 15 C 0.15 5.78 6.26 86.38 0.54 6.32 16 16 N -0.76 -37.19 5.41 -343.44 -1.86 -39.05 16 17 C -0.24 -14.34 10.47 84.03 0.88 -13.46 16 18 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 19 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 20 N -0.98 -64.27 13.97 21.65 0.30 -63.97 16 21 Si 0.96 46.44 27.74 68.60 1.90 48.35 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 24 H -0.25 -11.07 6.52 99.48 0.65 -10.42 16 25 C -0.26 -3.17 11.07 66.78 0.74 -2.43 16 26 S 0.14 1.70 23.18 -56.49 -1.31 0.39 16 27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.15 0.39 8.03 -2.39 -0.02 0.37 16 34 H 0.42 2.27 8.47 -92.71 -0.79 1.49 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.37 16.88 5.53 -92.71 -0.51 16.37 16 48 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 49 H 0.21 1.04 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -84.59 417.46 0.61 -83.98 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.42 Total: 20.07 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 6.35 Total: -8.25 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -5.86 Total: -127.37 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.05 Total: -17.17 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.90 Total: 48.35 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -1.31 Total: 0.39 kcal Total: -84.59 0.61 -83.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180356797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.490 kcal (2) G-P(sol) polarization free energy of solvation -84.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds