Wall clock time and date at job start Tue Mar 31 2020 22:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00073 * 2 1 4 4 H 1.48498 * 109.47367 * 240.00256 * 3 2 1 5 5 H 1.48501 * 109.46807 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47113 * 120.00165 * 3 2 1 7 7 C 1.38945 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00259 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99803 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00206 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99928 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00080 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46940 * 179.97438 * 12 10 9 14 14 C 1.46896 * 110.99968 * 179.97438 * 13 12 10 15 15 H 1.09004 * 110.91416 * 322.55352 * 14 13 12 16 16 C 1.55151 * 111.00522 * 198.64747 * 14 13 12 17 17 C 1.54326 * 102.94313 * 206.42077 * 16 14 13 18 18 N 1.47021 * 107.27002 * 22.19392 * 17 16 14 19 19 C 1.34778 * 125.64744 * 181.08547 * 18 17 16 20 20 O 1.21608 * 119.99951 * 179.97438 * 19 18 17 21 21 C 1.47292 * 120.00018 * 359.96798 * 19 18 17 22 22 F 1.35096 * 120.00247 * 359.97438 * 21 19 18 23 23 C 1.33114 * 120.00016 * 179.97438 * 21 19 18 24 24 C 1.51452 * 126.34233 * 359.69622 * 23 21 19 25 25 C 1.54271 * 106.85072 * 180.23820 * 24 23 21 26 26 C 1.54984 * 103.66779 * 23.47877 * 25 24 23 27 27 C 1.51845 * 126.34334 * 179.97438 * 23 21 19 28 28 C 1.47421 * 108.70450 * 1.06211 * 18 17 16 29 29 H 0.96998 * 119.99869 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99733 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.47093 * 59.99717 * 12 10 9 32 32 H 1.08992 * 109.47052 * 299.99605 * 12 10 9 33 33 H 1.00906 * 110.99708 * 303.95290 * 13 12 10 34 34 H 1.09000 * 110.72429 * 324.79030 * 16 14 13 35 35 H 1.09003 * 110.71831 * 88.06152 * 16 14 13 36 36 H 1.08996 * 109.88384 * 262.77575 * 17 16 14 37 37 H 1.09002 * 110.00880 * 141.68666 * 17 16 14 38 38 H 1.08998 * 109.97825 * 299.71873 * 24 23 21 39 39 H 1.08996 * 109.98868 * 61.02110 * 24 23 21 40 40 H 1.08999 * 110.79737 * 264.84927 * 25 24 23 41 41 H 1.09003 * 110.56055 * 141.99190 * 25 24 23 42 42 H 1.08992 * 110.83660 * 204.49175 * 26 25 24 43 43 H 1.09000 * 111.00295 * 80.98270 * 26 25 24 44 44 H 1.09002 * 110.44109 * 274.93173 * 27 23 21 45 45 H 1.08999 * 110.44060 * 37.45280 * 27 23 21 46 46 H 1.09002 * 110.36865 * 217.03325 * 28 18 17 47 47 H 1.09001 * 110.37117 * 94.70643 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 1.4982 -7.2708 -0.0016 15 1 0.6022 -7.2276 0.6178 16 6 2.4396 -8.4140 0.4610 17 6 1.8356 -9.6578 -0.2243 18 7 1.0473 -9.1846 -1.3715 19 6 0.3432 -9.9641 -2.2159 20 8 -0.2751 -9.4616 -3.1346 21 6 0.3226 -11.4246 -2.0259 22 9 1.0100 -11.9828 -1.0056 23 6 -0.3733 -12.1944 -2.8595 24 6 -1.1963 -11.7236 -4.0406 25 6 -1.8122 -12.9818 -4.6865 26 6 -1.8216 -14.0179 -3.5340 27 6 -0.4939 -13.7069 -2.7990 28 6 1.1543 -7.7161 -1.4450 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3906 0.0002 31 1 0.6174 -4.9204 -0.8914 32 1 0.6169 -4.9209 0.8886 33 1 2.8333 -5.9120 -0.7830 34 1 3.4581 -8.2390 0.1144 35 1 2.4132 -8.5202 1.5456 36 1 1.1903 -10.1896 0.4749 37 1 2.6320 -10.3176 -0.5685 38 1 -1.9852 -11.0526 -3.7009 39 1 -0.5567 -11.2128 -4.7604 40 1 -1.1951 -13.3341 -5.5131 41 1 -2.8275 -12.7792 -5.0275 42 1 -1.8182 -15.0347 -3.9266 43 1 -2.6755 -13.8614 -2.8749 44 1 0.3449 -14.1765 -3.3129 45 1 -0.5440 -14.0437 -1.7636 46 1 0.2054 -7.2819 -1.7600 47 1 1.9507 -7.4275 -2.1309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182006440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:08 Heat of formation + Delta-G solvation = -102.390185 kcal Electronic energy + Delta-G solvation = -28808.628359 eV Core-core repulsion = 24519.651392 eV Total energy + Delta-G solvation = -4288.976968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.19076 -40.34208 -38.87308 -38.21805 -37.50250 -34.77820 -33.80030 -31.77414 -31.27906 -30.86570 -29.28960 -28.85765 -26.73634 -25.51303 -24.05514 -23.11635 -21.49949 -21.06350 -20.61884 -19.34031 -18.92733 -17.95618 -17.73588 -16.90503 -16.61542 -16.21296 -15.98158 -15.88520 -15.48706 -15.21134 -14.54280 -14.39532 -14.27643 -14.06135 -13.77117 -13.71611 -13.61209 -13.30161 -13.00166 -12.85192 -12.68649 -12.54588 -12.28401 -11.98042 -11.86850 -11.67668 -11.59204 -11.52847 -11.47495 -11.33559 -11.06329 -11.02073 -10.90777 -10.44420 -10.21969 -10.17285 -9.50864 -9.36040 -8.85224 -8.51273 -8.14685 -7.97258 -6.42143 -3.83212 0.78179 2.51434 2.74408 3.20099 3.25977 3.30283 3.69919 3.80706 3.88923 4.04098 4.17762 4.24874 4.44764 4.51843 4.55550 4.65883 4.81186 4.88437 4.96494 5.01172 5.09484 5.11715 5.18526 5.25678 5.28513 5.36772 5.41192 5.50224 5.56016 5.56491 5.64457 5.65136 5.68580 5.75520 5.82205 5.88926 5.93483 5.94934 5.98198 6.13375 6.25006 7.10484 7.14476 7.52823 7.54644 7.72043 8.04957 8.59966 9.16870 9.53013 10.04091 10.75398 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024242 B = 0.001820 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.724094 B =15381.667977 C =16241.239374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.047 3.953 13 N -0.651 5.651 14 C 0.078 3.922 15 H 0.096 0.904 16 C -0.121 4.121 17 C 0.099 3.901 18 N -0.608 5.608 19 C 0.562 3.438 20 O -0.521 6.521 21 C -0.007 4.007 22 F -0.135 7.135 23 C -0.074 4.074 24 C -0.080 4.080 25 C -0.128 4.128 26 C -0.123 4.123 27 C -0.096 4.096 28 C 0.074 3.926 29 H 0.272 0.728 30 H 0.393 0.607 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.353 0.647 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 -28.803 -4.602 29.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.085 4.085 13 N -0.282 5.282 14 C -0.034 4.034 15 H 0.114 0.886 16 C -0.160 4.160 17 C -0.024 4.024 18 N -0.341 5.341 19 C 0.351 3.649 20 O -0.399 6.399 21 C -0.029 4.029 22 F -0.113 7.113 23 C -0.077 4.077 24 C -0.117 4.117 25 C -0.166 4.166 26 C -0.161 4.161 27 C -0.132 4.132 28 C -0.050 4.050 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.174 0.826 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.925 -28.366 -4.409 28.974 hybrid contribution -0.352 0.717 -0.602 1.001 sum -4.277 -27.649 -5.011 28.423 Atomic orbital electron populations 1.69604 1.05940 1.28308 1.50377 1.25271 0.95643 0.99755 0.97246 0.85908 0.78754 0.80411 0.79078 1.19908 1.20977 1.19869 1.19658 0.93362 0.82221 1.47792 0.87933 1.41855 1.09224 1.04591 1.64177 1.19757 0.88366 0.84679 0.84681 1.90526 1.13715 1.87042 1.55541 1.21753 0.94385 0.90895 1.01466 1.60162 1.18001 0.99008 1.51027 1.22829 0.97123 0.89953 0.93528 0.88612 1.22681 0.99947 0.92007 1.01330 1.22308 0.95075 0.97608 0.87436 1.48266 1.48605 1.07952 1.29281 1.17829 0.79586 0.85416 0.82104 1.90842 1.43914 1.73961 1.31230 1.18729 1.02375 0.90618 0.91195 1.91470 1.77701 1.85107 1.57069 1.23045 0.93313 0.96667 0.94672 1.21170 0.98792 0.97688 0.94069 1.22475 1.01443 0.94874 0.97795 1.22533 0.96719 0.99476 0.97327 1.21516 0.99167 0.90472 1.02086 1.23247 1.02900 0.79285 0.99567 0.91788 0.77424 0.93555 0.89354 0.82617 0.89706 0.89213 0.90775 0.90803 0.89069 0.89209 0.91097 0.90803 0.90701 0.90899 0.89105 0.90140 0.90022 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 10 C 0.44 10.25 7.82 -10.98 -0.09 10.17 16 11 O -0.58 -15.67 15.78 5.55 0.09 -15.59 16 12 C 0.05 0.81 6.04 -4.97 -0.03 0.78 16 13 N -0.65 -9.90 6.00 -105.72 -0.63 -10.54 16 14 C 0.08 0.91 3.32 -65.57 -0.22 0.69 16 15 H 0.10 1.09 7.92 -51.93 -0.41 0.67 16 16 C -0.12 -1.17 6.65 -24.90 -0.17 -1.34 16 17 C 0.10 0.92 5.48 -3.06 -0.02 0.90 16 18 N -0.61 -7.08 3.33 -171.83 -0.57 -7.65 16 19 C 0.56 7.12 7.80 -12.58 -0.10 7.02 16 20 O -0.52 -7.80 14.37 5.27 0.08 -7.72 16 21 C -0.01 -0.07 7.31 -37.69 -0.28 -0.35 16 22 F -0.13 -1.34 14.16 2.25 0.03 -1.31 16 23 C -0.07 -0.67 6.16 -100.20 -0.62 -1.28 16 24 C -0.08 -0.69 4.82 -26.85 -0.13 -0.82 16 25 C -0.13 -0.77 6.87 -25.02 -0.17 -0.94 16 26 C -0.12 -0.65 6.95 -24.68 -0.17 -0.82 16 27 C -0.10 -0.61 6.45 -26.31 -0.17 -0.78 16 28 C 0.07 0.90 6.49 -2.53 -0.02 0.88 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.39 8.09 -51.93 -0.42 0.97 16 33 H 0.35 5.58 8.01 -39.29 -0.31 5.26 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.64 7.57 -51.93 -0.39 0.24 16 37 H 0.07 0.64 7.68 -51.93 -0.40 0.25 16 38 H 0.09 0.89 7.67 -51.93 -0.40 0.49 16 39 H 0.09 0.87 7.68 -51.93 -0.40 0.47 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16 47 H 0.07 0.90 7.80 -51.93 -0.41 0.50 16 LS Contribution 387.28 15.07 5.84 5.84 Total: -1.00 -32.17 387.28 -9.13 -41.30 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -7.20 Total: 11.57 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -2.41 Total: 6.10 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.54 Total: -56.24 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.16 Total: -23.31 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.03 Total: -1.31 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.17 -9.13 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182006440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.089 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds