Wall clock time and date at job start Tue Mar 31 2020 22:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00073 * 2 1 4 4 H 1.48498 * 109.47367 * 240.00256 * 3 2 1 5 5 H 1.48501 * 109.46807 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47113 * 120.00165 * 3 2 1 7 7 C 1.38945 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00259 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99803 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00206 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99928 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00080 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46940 * 179.97438 * 12 10 9 14 14 C 1.46896 * 110.99968 * 179.97438 * 13 12 10 15 15 H 1.09004 * 110.91416 * 322.55352 * 14 13 12 16 16 C 1.55151 * 111.00522 * 198.64747 * 14 13 12 17 17 C 1.54326 * 102.94313 * 206.42077 * 16 14 13 18 18 N 1.47021 * 107.27002 * 22.19392 * 17 16 14 19 19 C 1.34778 * 125.64744 * 181.08547 * 18 17 16 20 20 O 1.21608 * 119.99951 * 179.97438 * 19 18 17 21 21 C 1.47292 * 120.00018 * 359.96798 * 19 18 17 22 22 F 1.35096 * 120.00247 * 359.97438 * 21 19 18 23 23 C 1.33114 * 120.00016 * 179.97438 * 21 19 18 24 24 C 1.51452 * 126.34233 * 359.69622 * 23 21 19 25 25 C 1.54271 * 106.85072 * 180.23820 * 24 23 21 26 26 C 1.54984 * 103.66779 * 23.47877 * 25 24 23 27 27 C 1.51845 * 126.34334 * 179.97438 * 23 21 19 28 28 C 1.47421 * 108.70450 * 1.06211 * 18 17 16 29 29 H 0.96998 * 119.99869 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99733 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.47093 * 59.99717 * 12 10 9 32 32 H 1.08992 * 109.47052 * 299.99605 * 12 10 9 33 33 H 1.00906 * 110.99708 * 303.95290 * 13 12 10 34 34 H 1.09000 * 110.72429 * 324.79030 * 16 14 13 35 35 H 1.09003 * 110.71831 * 88.06152 * 16 14 13 36 36 H 1.08996 * 109.88384 * 262.77575 * 17 16 14 37 37 H 1.09002 * 110.00880 * 141.68666 * 17 16 14 38 38 H 1.08998 * 109.97825 * 299.71873 * 24 23 21 39 39 H 1.08996 * 109.98868 * 61.02110 * 24 23 21 40 40 H 1.08999 * 110.79737 * 264.84927 * 25 24 23 41 41 H 1.09003 * 110.56055 * 141.99190 * 25 24 23 42 42 H 1.08992 * 110.83660 * 204.49175 * 26 25 24 43 43 H 1.09000 * 111.00295 * 80.98270 * 26 25 24 44 44 H 1.09002 * 110.44109 * 274.93173 * 27 23 21 45 45 H 1.08999 * 110.44060 * 37.45280 * 27 23 21 46 46 H 1.09002 * 110.36865 * 217.03325 * 28 18 17 47 47 H 1.09001 * 110.37117 * 94.70643 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 1.4982 -7.2708 -0.0016 15 1 0.6022 -7.2276 0.6178 16 6 2.4396 -8.4140 0.4610 17 6 1.8356 -9.6578 -0.2243 18 7 1.0473 -9.1846 -1.3715 19 6 0.3432 -9.9641 -2.2159 20 8 -0.2751 -9.4616 -3.1346 21 6 0.3226 -11.4246 -2.0259 22 9 1.0100 -11.9828 -1.0056 23 6 -0.3733 -12.1944 -2.8595 24 6 -1.1963 -11.7236 -4.0406 25 6 -1.8122 -12.9818 -4.6865 26 6 -1.8216 -14.0179 -3.5340 27 6 -0.4939 -13.7069 -2.7990 28 6 1.1543 -7.7161 -1.4450 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3906 0.0002 31 1 0.6174 -4.9204 -0.8914 32 1 0.6169 -4.9209 0.8886 33 1 2.8333 -5.9120 -0.7830 34 1 3.4581 -8.2390 0.1144 35 1 2.4132 -8.5202 1.5456 36 1 1.1903 -10.1896 0.4749 37 1 2.6320 -10.3176 -0.5685 38 1 -1.9852 -11.0526 -3.7009 39 1 -0.5567 -11.2128 -4.7604 40 1 -1.1951 -13.3341 -5.5131 41 1 -2.8275 -12.7792 -5.0275 42 1 -1.8182 -15.0347 -3.9266 43 1 -2.6755 -13.8614 -2.8749 44 1 0.3449 -14.1765 -3.3129 45 1 -0.5440 -14.0437 -1.7636 46 1 0.2054 -7.2819 -1.7600 47 1 1.9507 -7.4275 -2.1309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182006440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:07 Heat of formation + Delta-G solvation = -124.162068 kcal Electronic energy + Delta-G solvation = -28809.572459 eV Core-core repulsion = 24519.651392 eV Total energy + Delta-G solvation = -4289.921067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.94448 -41.28949 -40.21135 -39.42624 -38.42896 -36.22812 -35.57718 -33.28469 -32.52451 -31.84222 -29.96476 -29.76376 -28.09531 -26.66691 -25.53298 -24.06561 -22.23149 -21.85973 -21.36756 -21.12344 -19.95153 -19.71747 -18.68104 -17.87305 -17.65943 -17.27539 -17.01272 -16.78800 -16.68787 -16.36986 -16.09408 -15.84422 -15.48443 -15.18910 -15.00713 -14.71141 -14.34413 -14.24752 -14.12745 -14.00490 -13.61636 -13.50552 -13.41515 -13.27148 -13.22016 -12.90238 -12.69132 -12.49890 -12.44550 -12.34430 -12.12305 -12.07486 -12.02286 -11.77040 -11.52074 -11.50592 -11.10155 -10.36888 -10.19508 -10.02571 -9.71732 -9.41865 -8.47010 -5.96040 -0.01228 1.39771 1.41720 1.52704 1.62440 1.82880 2.04111 2.28670 2.77898 2.97496 3.16329 3.20080 3.39693 3.58365 3.65458 3.68566 3.95554 3.96393 4.10838 4.18876 4.23479 4.24947 4.31981 4.40338 4.41015 4.53175 4.58970 4.59752 4.71955 4.73813 4.77392 4.83277 4.91784 5.00425 5.03448 5.12317 5.13384 5.16621 5.20820 5.38102 5.40105 5.40461 5.84382 6.05363 6.23973 6.28170 6.58816 6.77446 7.11593 7.55092 8.09910 8.70063 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024242 B = 0.001820 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.724094 B =15381.667977 C =16241.239374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.438 3.562 11 O -0.622 6.622 12 C 0.062 3.938 13 N -0.659 5.659 14 C 0.083 3.917 15 H 0.106 0.894 16 C -0.113 4.113 17 C 0.102 3.898 18 N -0.610 5.610 19 C 0.555 3.445 20 O -0.555 6.555 21 C -0.027 4.027 22 F -0.131 7.131 23 C -0.062 4.062 24 C -0.084 4.084 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.095 4.095 28 C 0.077 3.923 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.348 0.652 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 -30.699 -4.273 31.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.070 4.070 13 N -0.290 5.290 14 C -0.028 4.028 15 H 0.124 0.876 16 C -0.151 4.151 17 C -0.020 4.020 18 N -0.342 5.342 19 C 0.345 3.655 20 O -0.436 6.436 21 C -0.049 4.049 22 F -0.110 7.110 23 C -0.065 4.065 24 C -0.121 4.121 25 C -0.161 4.161 26 C -0.155 4.155 27 C -0.132 4.132 28 C -0.048 4.048 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.168 0.832 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.123 0.877 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.429 -30.292 -4.057 30.882 hybrid contribution -0.204 1.235 -0.741 1.454 sum -4.634 -29.057 -4.797 29.813 Atomic orbital electron populations 1.69668 1.06851 1.29383 1.50196 1.26058 0.96556 1.02481 0.96234 0.84978 0.77743 0.76581 0.78968 1.19720 1.19538 1.19628 1.19648 0.92767 0.84015 1.50054 0.90183 1.41932 1.09352 1.04742 1.64946 1.20820 0.88249 0.86109 0.82309 1.90494 1.15751 1.87940 1.56688 1.21614 0.94069 0.88081 1.03259 1.60190 1.18003 0.99807 1.50981 1.22855 0.97800 0.88768 0.93418 0.87640 1.22661 0.99220 0.90943 1.02282 1.22415 0.95263 0.97556 0.86799 1.48362 1.48517 1.07656 1.29698 1.18231 0.79158 0.86430 0.81726 1.90817 1.45411 1.74769 1.32609 1.18487 1.04254 0.89613 0.92516 1.91469 1.77797 1.84792 1.56939 1.23432 0.91295 0.98362 0.93451 1.21197 0.98189 0.98802 0.93899 1.22478 1.01780 0.93614 0.98259 1.22553 0.95982 1.00258 0.96738 1.21651 1.00372 0.88182 1.02969 1.23130 1.02024 0.79928 0.99713 0.91290 0.76980 0.91736 0.87295 0.83212 0.89970 0.87615 0.89513 0.89893 0.90622 0.90741 0.90110 0.90073 0.88582 0.90825 0.87669 0.89424 0.91238 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.94 13.05 21.66 0.28 -49.66 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 3 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.34 -19.11 9.68 84.04 0.81 -18.29 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.57 -29.42 5.29 -306.99 -1.62 -31.05 16 10 C 0.44 20.65 7.82 87.66 0.69 21.34 16 11 O -0.62 -34.15 15.78 -3.07 -0.05 -34.20 16 12 C 0.06 2.07 6.04 85.56 0.52 2.59 16 13 N -0.66 -19.57 6.00 -488.40 -2.93 -22.50 16 14 C 0.08 1.83 3.32 46.31 0.15 1.99 16 15 H 0.11 2.18 7.92 -2.38 -0.02 2.16 16 16 C -0.11 -1.98 6.65 31.78 0.21 -1.77 16 17 C 0.10 1.73 5.48 86.73 0.48 2.21 16 18 N -0.61 -13.92 3.33 -815.81 -2.71 -16.64 16 19 C 0.55 14.16 7.80 86.62 0.68 14.83 16 20 O -0.56 -17.22 14.37 -4.06 -0.06 -17.28 16 21 C -0.03 -0.55 7.31 23.50 0.17 -0.37 16 22 F -0.13 -2.42 14.16 44.97 0.64 -1.78 16 23 C -0.06 -1.06 6.16 -16.99 -0.10 -1.17 16 24 C -0.08 -1.44 4.82 30.52 0.15 -1.29 16 25 C -0.12 -1.27 6.87 31.70 0.22 -1.05 16 26 C -0.12 -0.92 6.95 31.93 0.22 -0.70 16 27 C -0.10 -0.99 6.45 30.87 0.20 -0.79 16 28 C 0.08 1.84 6.49 86.86 0.56 2.41 16 29 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 31 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.11 3.23 8.09 -2.39 -0.02 3.21 16 33 H 0.35 11.00 8.01 -89.69 -0.72 10.29 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.30 7.57 -2.39 -0.02 1.28 16 37 H 0.08 1.30 7.68 -2.39 -0.02 1.28 16 38 H 0.08 1.53 7.67 -2.39 -0.02 1.52 16 39 H 0.07 1.50 7.68 -2.39 -0.02 1.48 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.07 1.83 8.04 -2.39 -0.02 1.81 16 47 H 0.07 1.68 7.80 -2.39 -0.02 1.66 16 Total: -1.00 -70.58 387.28 0.54 -70.03 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: -0.44 Total: 38.27 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 5.41 Total: 19.67 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -6.98 Total: -119.85 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.11 Total: -51.48 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.64 Total: -1.78 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -70.58 0.54 -70.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182006440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.129 kcal (2) G-P(sol) polarization free energy of solvation -70.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds