Wall clock time and date at job start Tue Mar 31 2020 23:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 C 1.33107 * 120.00392 * 179.97438 * 2 1 3 5 5 F 1.35096 * 120.00243 * 185.45995 * 4 2 1 6 6 C 1.47301 * 119.99939 * 5.45936 * 4 2 1 7 7 O 1.21611 * 119.99763 * 265.27400 * 6 4 2 8 8 N 1.34773 * 120.00028 * 85.26880 * 6 4 2 9 9 C 1.46721 * 125.24254 * 359.95941 * 8 6 4 10 10 C 1.54042 * 106.53281 * 160.86076 * 9 8 6 11 11 C 1.53883 * 103.86394 * 28.03336 * 10 9 8 12 12 H 1.08999 * 111.74821 * 95.31515 * 11 10 9 13 13 C 1.53561 * 110.01392 * 220.92505 * 11 10 9 14 14 N 1.47913 * 106.90223 * 118.33770 * 13 11 10 15 15 C 1.46901 * 110.99891 * 211.76397 * 14 13 11 16 16 C 1.50700 * 109.47195 * 190.00053 * 15 14 13 17 17 O 1.21291 * 119.99664 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00115 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00251 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99541 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00534 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99756 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00192 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47230 * 59.99846 * 23 21 19 25 25 H 1.48499 * 109.46954 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47198 * 300.00089 * 23 21 19 27 27 C 1.48339 * 105.71954 * 332.21198 * 14 13 11 28 28 C 1.46782 * 125.24104 * 180.02562 * 8 6 4 29 29 H 1.09001 * 112.20070 * 58.39102 * 28 8 6 30 30 H 1.09001 * 109.46839 * 185.22069 * 1 2 3 31 31 H 1.09001 * 109.47453 * 305.22703 * 1 2 3 32 32 H 1.08998 * 109.47038 * 65.22463 * 1 2 3 33 33 H 1.08995 * 109.47276 * 270.00049 * 3 2 1 34 34 H 1.09008 * 109.47034 * 29.99612 * 3 2 1 35 35 H 1.09000 * 109.47315 * 149.99439 * 3 2 1 36 36 H 1.09008 * 110.04767 * 280.12572 * 9 8 6 37 37 H 1.08998 * 110.04561 * 41.54082 * 9 8 6 38 38 H 1.08995 * 110.55168 * 146.63239 * 10 9 8 39 39 H 1.09009 * 110.54369 * 269.43805 * 10 9 8 40 40 H 1.08994 * 109.97731 * 237.69692 * 13 11 10 41 41 H 1.09000 * 109.97348 * 358.97748 * 13 11 10 42 42 H 1.09006 * 109.47137 * 309.99570 * 15 14 13 43 43 H 1.09002 * 109.47545 * 69.99723 * 15 14 13 44 44 H 0.97006 * 120.00274 * 359.97438 * 18 16 15 45 45 H 0.96997 * 119.99745 * 180.02562 * 22 21 19 46 46 H 1.09004 * 110.52733 * 279.99155 * 27 14 13 47 47 H 1.09002 * 110.52788 * 157.23647 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1527 0.0005 5 9 3.5190 -1.1553 0.1118 6 6 1.4412 -2.4256 -0.1203 7 8 1.1278 -3.0439 0.8789 8 7 1.1192 -2.9048 -1.3381 9 6 1.4380 -2.2558 -2.6147 10 6 1.3314 -3.3450 -3.6988 11 6 0.3013 -4.3348 -3.1270 12 1 -0.7031 -4.1322 -3.4987 13 6 0.7484 -5.7775 -3.4045 14 7 0.9407 -6.4284 -2.0903 15 6 2.0077 -7.4361 -2.1530 16 6 2.0113 -8.2439 -0.8808 17 8 1.2046 -8.0034 -0.0076 18 7 2.9107 -9.2335 -0.7134 19 6 2.9136 -9.9687 0.4437 20 1 2.1953 -9.7546 1.2213 21 6 3.8407 -10.9893 0.6162 22 7 4.7150 -11.2495 -0.3298 23 14 3.8450 -11.9906 2.1932 24 1 2.5328 -12.6669 2.3537 25 1 4.9225 -13.0105 2.1289 26 1 4.0829 -11.0907 3.3502 27 6 1.2945 -5.3375 -1.1494 28 6 0.3944 -4.1558 -1.5915 29 1 -0.5846 -4.1689 -1.1124 30 1 -0.3633 -1.0234 0.0935 31 1 -0.3634 0.5928 0.8395 32 1 -0.3633 0.4306 -0.9331 33 1 2.4421 1.6198 -1.0276 34 1 1.6713 2.0648 0.5138 35 1 3.2129 1.1749 0.5139 36 1 0.7243 -1.4570 -2.8163 37 1 2.4506 -1.8534 -2.5867 38 1 0.9731 -2.9185 -4.6357 39 1 2.2939 -3.8357 -3.8441 40 1 -0.0201 -6.3030 -3.9713 41 1 1.6861 -5.7763 -3.9601 42 1 1.8340 -8.0969 -3.0024 43 1 2.9706 -6.9390 -2.2705 44 1 3.5557 -9.4260 -1.4120 45 1 5.3618 -11.9622 -0.2095 46 1 2.3476 -5.0740 -1.2483 47 1 1.0669 -5.6285 -0.1238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187510705.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:35 Heat of formation + Delta-G solvation = -82.097688 kcal Electronic energy + Delta-G solvation = -30310.723178 eV Core-core repulsion = 26022.626159 eV Total energy + Delta-G solvation = -4288.097019 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.12348 -40.96511 -38.95638 -37.90410 -35.89851 -35.67186 -33.81014 -32.27712 -31.20792 -30.36052 -28.80467 -28.01536 -27.10624 -26.50159 -24.24800 -23.54752 -21.59715 -21.16433 -20.02570 -19.11787 -18.96840 -17.87371 -17.75927 -16.65832 -16.49538 -16.23167 -15.82026 -15.52882 -15.05804 -14.66542 -14.55884 -14.25576 -14.11916 -14.07630 -13.86656 -13.57102 -13.35465 -13.26627 -13.18749 -12.88707 -12.81690 -12.59222 -12.34740 -12.18669 -12.04984 -11.93580 -11.87260 -11.44753 -11.29366 -11.15145 -10.99869 -10.85562 -10.72645 -10.38686 -10.18367 -10.14954 -9.42039 -9.10249 -8.92926 -8.45100 -7.95819 -7.87895 -6.35499 -3.75810 1.14081 2.14332 2.59326 3.25507 3.30070 3.35368 3.77191 3.96398 3.99881 4.14848 4.22696 4.27773 4.43064 4.44789 4.49336 4.80286 4.93858 4.95071 5.04570 5.05886 5.12963 5.19961 5.26094 5.27098 5.30238 5.33520 5.39614 5.47646 5.51259 5.54909 5.60236 5.74379 5.78374 5.82128 5.84513 5.89502 6.03036 6.08362 6.17235 6.32412 6.50383 7.07305 7.17040 7.21125 7.61479 7.78205 8.12716 8.68844 9.25004 9.61087 10.13740 10.82498 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.002748 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.423464 B =10185.352923 C =11254.181388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.122 4.122 3 C -0.118 4.118 4 C 0.012 3.988 5 F -0.125 7.125 6 C 0.562 3.438 7 O -0.500 6.500 8 N -0.601 5.601 9 C 0.100 3.900 10 C -0.126 4.126 11 C -0.102 4.102 12 H 0.100 0.900 13 C 0.041 3.959 14 N -0.489 5.489 15 C 0.038 3.962 16 C 0.445 3.555 17 O -0.573 6.573 18 N -0.567 5.567 19 C -0.296 4.296 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.905 5.905 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.040 3.960 28 C 0.138 3.862 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.040 0.960 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.907 24.821 -10.897 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.125 4.125 3 C -0.175 4.175 4 C -0.011 4.011 5 F -0.104 7.104 6 C 0.347 3.653 7 O -0.374 6.374 8 N -0.336 5.336 9 C -0.023 4.023 10 C -0.164 4.164 11 C -0.122 4.122 12 H 0.118 0.882 13 C -0.087 4.087 14 N -0.213 5.213 15 C -0.093 4.093 16 C 0.230 3.770 17 O -0.456 6.456 18 N -0.204 5.204 19 C -0.426 4.426 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.546 5.546 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.089 4.089 28 C 0.035 3.965 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.059 0.941 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.860 24.222 -9.507 26.910 hybrid contribution 1.688 -0.305 -0.008 1.716 sum -5.172 23.917 -9.515 26.255 Atomic orbital electron populations 1.20809 0.89715 1.03610 1.03144 1.22415 0.97267 0.93792 0.98977 1.20783 1.00215 0.93476 1.02988 1.19224 0.77944 0.93929 1.09967 1.91514 1.28360 1.96993 1.93495 1.17897 0.80284 0.84310 0.82771 1.90943 1.53150 1.57747 1.35567 1.48302 1.56537 1.23570 1.05143 1.22079 1.01303 0.96113 0.82797 1.22569 0.99982 0.95959 0.97877 1.22591 1.00136 0.95476 0.93960 0.88213 1.22929 1.00653 0.92386 0.92740 1.64458 1.41377 1.10697 1.04765 1.22061 0.92830 0.95257 0.99195 1.19693 0.84598 0.83931 0.88809 1.90528 1.40757 1.70194 1.44145 1.41839 1.30272 1.29818 1.18448 1.19654 1.16017 1.11469 0.95461 0.87995 1.25242 0.95808 0.97921 0.99020 1.69606 1.19332 1.32207 1.33487 0.85926 0.77829 0.79082 0.81443 1.19896 1.21020 1.19914 1.23552 0.96357 0.88962 1.00014 1.22537 0.96169 0.82566 0.95234 0.87966 0.91393 0.90006 0.90378 0.90295 0.90748 0.90916 0.91052 0.90699 0.89339 0.90311 0.89833 0.93357 0.89162 0.93308 0.77584 0.91916 0.94140 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.92 36.01 0.36 -0.51 16 2 C -0.12 -1.09 6.11 -101.13 -0.62 -1.71 16 3 C -0.12 -0.76 9.88 36.01 0.36 -0.40 16 4 C 0.01 0.14 6.05 -37.68 -0.23 -0.09 16 5 F -0.12 -1.65 16.31 2.25 0.04 -1.62 16 6 C 0.56 8.18 5.31 -12.58 -0.07 8.11 16 7 O -0.50 -9.52 17.08 5.27 0.09 -9.43 16 8 N -0.60 -7.26 2.92 -164.08 -0.48 -7.74 16 9 C 0.10 0.80 6.58 -3.38 -0.02 0.78 16 10 C -0.13 -0.91 6.48 -25.73 -0.17 -1.08 16 11 C -0.10 -0.98 3.85 -88.88 -0.34 -1.32 16 12 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 13 C 0.04 0.48 6.24 -2.97 -0.02 0.47 16 14 N -0.49 -8.33 4.92 -232.29 -1.14 -9.47 16 15 C 0.04 0.71 5.21 -4.98 -0.03 0.68 16 16 C 0.44 11.00 7.61 -10.99 -0.08 10.92 16 17 O -0.57 -16.32 14.65 5.55 0.08 -16.24 16 18 N -0.57 -14.92 5.29 -10.96 -0.06 -14.98 16 19 C -0.30 -8.57 9.68 -14.93 -0.14 -8.72 16 20 H 0.10 3.10 7.16 -52.48 -0.38 2.72 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -25.29 13.05 55.50 0.72 -24.56 16 23 Si 0.93 21.83 29.55 -169.99 -5.02 16.80 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.04 0.70 4.97 -1.98 -0.01 0.69 16 28 C 0.14 1.83 3.91 -65.74 -0.26 1.57 16 29 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.07 0.66 6.35 -51.93 -0.33 0.33 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.36 8.12 -51.92 -0.42 -0.06 16 35 H 0.07 0.53 7.48 -51.93 -0.39 0.14 16 36 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 37 H 0.07 0.58 7.78 -51.93 -0.40 0.18 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.63 7.33 -51.92 -0.38 0.25 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.51 6.88 -51.93 -0.36 0.16 16 42 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 43 H 0.05 0.84 7.81 -51.93 -0.41 0.43 16 44 H 0.39 9.80 7.90 -40.82 -0.32 9.47 16 45 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.04 0.73 7.70 -51.93 -0.40 0.33 16 47 H 0.11 2.36 7.11 -51.93 -0.37 1.99 16 LS Contribution 385.53 15.07 5.81 5.81 Total: -1.00 -35.49 385.53 -8.42 -43.90 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.09 Total: 7.63 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -1.37 Total: 9.88 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.96 Total: -56.75 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: 0.17 Total: -25.67 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.49 -8.42 -43.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187510705.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.193 kcal (2) G-P(sol) polarization free energy of solvation -35.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds