Wall clock time and date at job start Tue Mar 31 2020 23:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 C 1.33107 * 120.00392 * 179.97438 * 2 1 3 5 5 F 1.35096 * 120.00243 * 185.45995 * 4 2 1 6 6 C 1.47301 * 119.99939 * 5.45936 * 4 2 1 7 7 O 1.21611 * 119.99763 * 265.27400 * 6 4 2 8 8 N 1.34773 * 120.00028 * 85.26880 * 6 4 2 9 9 C 1.46721 * 125.24254 * 359.95941 * 8 6 4 10 10 C 1.54042 * 106.53281 * 160.86076 * 9 8 6 11 11 C 1.53883 * 103.86394 * 28.03336 * 10 9 8 12 12 H 1.08999 * 111.74821 * 95.31515 * 11 10 9 13 13 C 1.53561 * 110.01392 * 220.92505 * 11 10 9 14 14 N 1.47913 * 106.90223 * 118.33770 * 13 11 10 15 15 C 1.46901 * 110.99891 * 211.76397 * 14 13 11 16 16 C 1.50700 * 109.47195 * 190.00053 * 15 14 13 17 17 O 1.21291 * 119.99664 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00115 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00251 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99541 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00534 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99756 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00192 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47230 * 59.99846 * 23 21 19 25 25 H 1.48499 * 109.46954 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47198 * 300.00089 * 23 21 19 27 27 C 1.48339 * 105.71954 * 332.21198 * 14 13 11 28 28 C 1.46782 * 125.24104 * 180.02562 * 8 6 4 29 29 H 1.09001 * 112.20070 * 58.39102 * 28 8 6 30 30 H 1.09001 * 109.46839 * 185.22069 * 1 2 3 31 31 H 1.09001 * 109.47453 * 305.22703 * 1 2 3 32 32 H 1.08998 * 109.47038 * 65.22463 * 1 2 3 33 33 H 1.08995 * 109.47276 * 270.00049 * 3 2 1 34 34 H 1.09008 * 109.47034 * 29.99612 * 3 2 1 35 35 H 1.09000 * 109.47315 * 149.99439 * 3 2 1 36 36 H 1.09008 * 110.04767 * 280.12572 * 9 8 6 37 37 H 1.08998 * 110.04561 * 41.54082 * 9 8 6 38 38 H 1.08995 * 110.55168 * 146.63239 * 10 9 8 39 39 H 1.09009 * 110.54369 * 269.43805 * 10 9 8 40 40 H 1.08994 * 109.97731 * 237.69692 * 13 11 10 41 41 H 1.09000 * 109.97348 * 358.97748 * 13 11 10 42 42 H 1.09006 * 109.47137 * 309.99570 * 15 14 13 43 43 H 1.09002 * 109.47545 * 69.99723 * 15 14 13 44 44 H 0.97006 * 120.00274 * 359.97438 * 18 16 15 45 45 H 0.96997 * 119.99745 * 180.02562 * 22 21 19 46 46 H 1.09004 * 110.52733 * 279.99155 * 27 14 13 47 47 H 1.09002 * 110.52788 * 157.23647 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1527 0.0005 5 9 3.5190 -1.1553 0.1118 6 6 1.4412 -2.4256 -0.1203 7 8 1.1278 -3.0439 0.8789 8 7 1.1192 -2.9048 -1.3381 9 6 1.4380 -2.2558 -2.6147 10 6 1.3314 -3.3450 -3.6988 11 6 0.3013 -4.3348 -3.1270 12 1 -0.7031 -4.1322 -3.4987 13 6 0.7484 -5.7775 -3.4045 14 7 0.9407 -6.4284 -2.0903 15 6 2.0077 -7.4361 -2.1530 16 6 2.0113 -8.2439 -0.8808 17 8 1.2046 -8.0034 -0.0076 18 7 2.9107 -9.2335 -0.7134 19 6 2.9136 -9.9687 0.4437 20 1 2.1953 -9.7546 1.2213 21 6 3.8407 -10.9893 0.6162 22 7 4.7150 -11.2495 -0.3298 23 14 3.8450 -11.9906 2.1932 24 1 2.5328 -12.6669 2.3537 25 1 4.9225 -13.0105 2.1289 26 1 4.0829 -11.0907 3.3502 27 6 1.2945 -5.3375 -1.1494 28 6 0.3944 -4.1558 -1.5915 29 1 -0.5846 -4.1689 -1.1124 30 1 -0.3633 -1.0234 0.0935 31 1 -0.3634 0.5928 0.8395 32 1 -0.3633 0.4306 -0.9331 33 1 2.4421 1.6198 -1.0276 34 1 1.6713 2.0648 0.5138 35 1 3.2129 1.1749 0.5139 36 1 0.7243 -1.4570 -2.8163 37 1 2.4506 -1.8534 -2.5867 38 1 0.9731 -2.9185 -4.6357 39 1 2.2939 -3.8357 -3.8441 40 1 -0.0201 -6.3030 -3.9713 41 1 1.6861 -5.7763 -3.9601 42 1 1.8340 -8.0969 -3.0024 43 1 2.9706 -6.9390 -2.2705 44 1 3.5557 -9.4260 -1.4120 45 1 5.3618 -11.9622 -0.2095 46 1 2.3476 -5.0740 -1.2483 47 1 1.0669 -5.6285 -0.1238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187510705.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:34 Heat of formation + Delta-G solvation = -109.152234 kcal Electronic energy + Delta-G solvation = -30311.896352 eV Core-core repulsion = 26022.626159 eV Total energy + Delta-G solvation = -4289.270192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.02437 -41.98837 -40.38502 -39.53344 -37.04985 -36.54378 -35.90807 -33.40287 -33.18364 -31.51342 -29.69592 -28.67937 -28.11351 -27.97216 -26.09414 -24.43700 -22.67278 -22.16545 -21.10194 -20.82697 -19.98473 -19.84707 -18.78833 -17.86197 -17.57485 -17.43644 -17.02572 -16.69532 -16.42455 -16.31824 -15.99120 -15.56949 -15.44691 -15.19982 -14.81523 -14.69304 -14.56234 -14.28380 -14.12263 -13.89994 -13.79739 -13.59134 -13.47888 -13.28112 -13.14106 -13.01518 -12.96091 -12.91503 -12.60986 -12.53014 -12.47748 -12.16018 -11.98972 -11.91960 -11.61604 -11.52349 -11.27041 -10.37736 -10.05136 -9.95260 -9.88702 -9.36150 -8.50355 -5.99217 0.35875 1.06920 1.35884 1.36952 1.48492 1.65069 2.01481 2.25516 2.76816 2.94591 3.15491 3.30639 3.38197 3.47989 3.50586 3.64923 3.81183 4.01228 4.04839 4.20218 4.24718 4.29204 4.32689 4.39200 4.46242 4.51740 4.58438 4.59577 4.64793 4.69202 4.78999 4.84032 4.86984 4.92156 4.97942 5.01009 5.08833 5.14144 5.21188 5.33266 5.36347 5.41128 5.73524 5.89006 6.05171 6.18423 6.57116 6.74252 7.09309 7.51820 8.09373 8.67106 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.002748 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.423464 B =10185.352923 C =11254.181388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.080 4.080 3 C -0.120 4.120 4 C -0.036 4.036 5 F -0.139 7.139 6 C 0.557 3.443 7 O -0.568 6.568 8 N -0.595 5.595 9 C 0.092 3.908 10 C -0.116 4.116 11 C -0.087 4.087 12 H 0.132 0.868 13 C 0.039 3.961 14 N -0.512 5.512 15 C 0.052 3.948 16 C 0.436 3.564 17 O -0.619 6.619 18 N -0.574 5.574 19 C -0.336 4.336 20 H 0.074 0.926 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.270 1.270 25 H -0.265 1.265 26 H -0.276 1.276 27 C 0.047 3.953 28 C 0.137 3.863 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.131 0.869 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.121 0.879 43 H 0.065 0.935 44 H 0.397 0.603 45 H 0.279 0.721 46 H 0.026 0.974 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.311 27.232 -14.131 31.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.082 4.082 3 C -0.176 4.176 4 C -0.058 4.058 5 F -0.118 7.118 6 C 0.344 3.656 7 O -0.447 6.447 8 N -0.327 5.327 9 C -0.029 4.029 10 C -0.154 4.154 11 C -0.106 4.106 12 H 0.150 0.850 13 C -0.088 4.088 14 N -0.237 5.237 15 C -0.079 4.079 16 C 0.224 3.776 17 O -0.505 6.505 18 N -0.212 5.212 19 C -0.465 4.465 20 H 0.092 0.908 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.189 1.189 26 H -0.201 1.201 27 C -0.082 4.082 28 C 0.033 3.967 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.149 0.851 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.139 0.861 43 H 0.082 0.918 44 H 0.230 0.770 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.242 26.657 -12.832 30.458 hybrid contribution 1.757 -0.978 0.992 2.242 sum -5.486 25.680 -11.840 28.805 Atomic orbital electron populations 1.20950 0.88486 1.02537 1.05620 1.22897 0.98090 0.93730 0.93522 1.20941 0.99677 0.92277 1.04750 1.19052 0.77629 0.93650 1.15501 1.91466 1.29130 1.96981 1.94229 1.18432 0.79717 0.84800 0.82617 1.90893 1.55938 1.59959 1.37890 1.48416 1.55209 1.22982 1.06101 1.22456 1.02595 0.97095 0.80729 1.22631 0.98993 0.94766 0.98973 1.22643 1.02767 0.94748 0.90414 0.84968 1.23133 1.02337 0.93418 0.89892 1.64336 1.40675 1.10888 1.07775 1.21924 0.94417 0.95491 0.96109 1.20890 0.83005 0.83331 0.90410 1.90502 1.42338 1.71210 1.46405 1.41904 1.30947 1.30319 1.18035 1.19591 1.16983 1.13562 0.96384 0.90837 1.26029 0.94826 0.98139 1.02158 1.69658 1.19271 1.32445 1.34664 0.85010 0.78387 0.77729 0.77326 1.19558 1.18919 1.20117 1.23245 0.96444 0.91206 0.97275 1.22453 0.94453 0.81535 0.98251 0.89462 0.94118 0.88341 0.86881 0.87716 0.88434 0.91977 0.87752 0.90277 0.85072 0.90947 0.87967 0.91397 0.86109 0.91757 0.76957 0.91179 0.95568 0.94092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 9.92 71.24 0.71 -0.80 16 2 C -0.08 -1.30 6.11 -17.60 -0.11 -1.40 16 3 C -0.12 -1.18 9.88 71.24 0.70 -0.47 16 4 C -0.04 -0.90 6.05 23.50 0.14 -0.76 16 5 F -0.14 -3.85 16.31 44.97 0.73 -3.11 16 6 C 0.56 17.35 5.31 86.63 0.46 17.81 16 7 O -0.57 -24.16 17.08 -4.07 -0.07 -24.23 16 8 N -0.59 -14.50 2.92 -791.29 -2.31 -16.81 16 9 C 0.09 1.22 6.58 86.69 0.57 1.79 16 10 C -0.12 -1.18 6.48 31.24 0.20 -0.98 16 11 C -0.09 -1.39 3.85 -9.67 -0.04 -1.43 16 12 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 13 C 0.04 0.81 6.24 86.30 0.54 1.35 16 14 N -0.51 -17.69 4.92 -888.84 -4.37 -22.07 16 15 C 0.05 1.94 5.21 85.56 0.45 2.39 16 16 C 0.44 22.75 7.61 87.66 0.67 23.42 16 17 O -0.62 -37.95 14.65 -3.06 -0.04 -38.00 16 18 N -0.57 -31.61 5.29 -306.99 -1.62 -33.23 16 19 C -0.34 -20.35 9.68 84.04 0.81 -19.53 16 20 H 0.07 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 22 N -0.92 -51.57 13.05 21.66 0.28 -51.29 16 23 Si 0.99 45.34 29.55 68.60 2.03 47.37 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 27 C 0.05 1.80 4.97 86.70 0.43 2.23 16 28 C 0.14 3.71 3.91 46.26 0.18 3.90 16 29 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.04 0.77 6.35 -2.39 -0.02 0.76 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.10 0.56 8.12 -2.38 -0.02 0.54 16 35 H 0.06 0.80 7.48 -2.39 -0.02 0.78 16 36 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.08 1.04 7.78 -2.39 -0.02 1.02 16 38 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.07 0.88 7.33 -2.38 -0.02 0.87 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 1.19 6.88 -2.39 -0.02 1.17 16 42 H 0.12 3.76 8.08 -2.38 -0.02 3.74 16 43 H 0.06 2.21 7.81 -2.39 -0.02 2.19 16 44 H 0.40 20.46 7.90 -92.70 -0.73 19.73 16 45 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 46 H 0.03 1.03 7.70 -2.39 -0.02 1.01 16 47 H 0.04 2.06 7.11 -2.39 -0.02 2.04 16 Total: -1.00 -87.64 385.53 1.07 -86.57 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.26 Total: 27.50 kcal Atomic # 6 Polarization: 21.12 SS G_CDS: 6.18 Total: 27.30 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -8.02 Total: -123.40 kcal Atomic # 8 Polarization: -62.11 SS G_CDS: -0.11 Total: -62.22 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.73 Total: -3.11 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -87.64 1.07 -86.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187510705.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.584 kcal (2) G-P(sol) polarization free energy of solvation -87.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds