Wall clock time and date at job start Tue Mar 31 2020 23:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50699 * 120.00213 * 2 1 4 4 C 1.33120 * 119.99601 * 179.97438 * 2 1 3 5 5 F 1.35098 * 119.99644 * 180.02562 * 4 2 1 6 6 C 1.47295 * 120.00305 * 0.02562 * 4 2 1 7 7 O 1.21609 * 120.00009 * 359.97438 * 6 4 2 8 8 N 1.34773 * 120.00266 * 180.02562 * 6 4 2 9 9 C 1.47233 * 136.44241 * 359.62906 * 8 6 4 10 10 C 1.53990 * 87.67373 * 151.99404 * 9 8 6 11 11 H 1.09002 * 114.92671 * 140.30364 * 10 9 8 12 12 C 1.51756 * 112.33561 * 271.50890 * 10 9 8 13 13 C 1.51677 * 113.41645 * 124.68293 * 12 10 9 14 14 N 1.46395 * 111.36366 * 312.63577 * 13 12 10 15 15 C 1.46900 * 111.00173 * 188.95126 * 14 13 12 16 16 C 1.50696 * 109.47009 * 301.19974 * 15 14 13 17 17 O 1.21294 * 120.00266 * 354.13626 * 16 15 14 18 18 N 1.34780 * 120.00411 * 174.13583 * 16 15 14 19 19 C 1.37093 * 120.00068 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00657 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99694 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99989 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00148 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47623 * 89.99485 * 23 21 19 25 25 H 1.48507 * 109.47239 * 209.99536 * 23 21 19 26 26 H 1.48502 * 109.47052 * 329.99408 * 23 21 19 27 27 C 1.46936 * 110.50478 * 65.34963 * 14 13 12 28 28 C 1.46594 * 136.45059 * 179.97438 * 8 6 4 29 29 H 1.09001 * 112.83027 * 95.07638 * 28 8 6 30 30 H 1.08997 * 109.47725 * 240.00296 * 1 2 3 31 31 H 1.09000 * 109.47568 * 0.02562 * 1 2 3 32 32 H 1.09006 * 109.46945 * 120.00233 * 1 2 3 33 33 H 1.09002 * 109.47033 * 270.00151 * 3 2 1 34 34 H 1.09003 * 109.46745 * 29.99717 * 3 2 1 35 35 H 1.08993 * 109.46974 * 149.99787 * 3 2 1 36 36 H 1.09005 * 113.51182 * 266.68871 * 9 8 6 37 37 H 1.08998 * 113.51992 * 37.29129 * 9 8 6 38 38 H 1.08994 * 108.69593 * 3.65604 * 12 10 9 39 39 H 1.09003 * 108.68464 * 245.69643 * 12 10 9 40 40 H 1.08999 * 109.09995 * 192.15245 * 13 12 10 41 41 H 1.08997 * 109.05624 * 73.08648 * 13 12 10 42 42 H 1.09000 * 109.47537 * 61.19682 * 15 14 13 43 43 H 1.08997 * 109.47220 * 181.20051 * 15 14 13 44 44 H 0.97004 * 119.99529 * 359.97438 * 18 16 15 45 45 H 0.97001 * 119.99694 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.49710 * 175.67315 * 27 14 13 47 47 H 1.09005 * 109.51268 * 55.61164 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1725 -1.1529 0.0005 5 9 3.5235 -1.1529 0.0010 6 6 1.4360 -2.4285 0.0005 7 8 0.2199 -2.4285 0.0005 8 7 2.1098 -3.5957 0.0016 9 6 3.5219 -4.0126 -0.0037 10 6 3.0809 -5.2951 0.7256 11 1 3.5839 -6.2053 0.3991 12 6 3.0732 -5.1272 2.2338 13 6 1.7375 -5.4604 2.8706 14 7 0.6314 -4.8225 2.1546 15 6 -0.6297 -4.9721 2.8929 16 6 -0.9281 -6.4366 3.0858 17 8 -0.2239 -7.2733 2.5610 18 7 -1.9773 -6.8169 3.8415 19 6 -2.2490 -8.1492 4.0165 20 1 -1.6221 -8.8941 3.5492 21 6 -3.3304 -8.5411 4.7960 22 7 -3.5912 -9.8182 4.9634 23 14 -4.4144 -7.2527 5.6048 24 1 -5.5247 -6.8927 4.6868 25 1 -4.9737 -7.7984 6.8677 26 1 -3.6067 -6.0428 5.9032 27 6 0.5142 -5.3695 0.7959 28 6 1.7663 -5.0208 0.0024 29 1 1.7540 -5.4535 -0.9980 30 1 -0.3634 -0.5138 0.8899 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 2.4422 1.6197 -1.0277 34 1 1.6714 2.0647 0.5138 35 1 3.2129 1.1747 0.5138 36 1 3.9178 -4.1947 -1.0029 37 1 4.1671 -3.3709 0.5963 38 1 3.3256 -4.0939 2.4716 39 1 3.8361 -5.7777 2.6615 40 1 1.7393 -5.1152 3.9045 41 1 1.5958 -6.5410 2.8558 42 1 -0.5410 -4.4883 3.8656 43 1 -1.4385 -4.5079 2.3286 44 1 -2.5402 -6.1478 4.2615 45 1 -4.3464 -10.0918 5.5073 46 1 -0.3591 -4.9403 0.3049 47 1 0.4064 -6.4530 0.8477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221477719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:38 Heat of formation + Delta-G solvation = -40.320947 kcal Electronic energy + Delta-G solvation = -30967.961173 eV Core-core repulsion = 26681.675729 eV Total energy + Delta-G solvation = -4286.285444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.97449 -41.14725 -39.03458 -38.37836 -35.84417 -35.16010 -33.85771 -32.04344 -31.69886 -30.05646 -28.74211 -28.11408 -27.10651 -25.84554 -23.96661 -23.62893 -21.80297 -21.25172 -19.45936 -19.11680 -18.57140 -18.14523 -17.27313 -16.54556 -16.17037 -15.89028 -15.81306 -15.55631 -15.13313 -14.78740 -14.42516 -14.30378 -14.03780 -13.80086 -13.58974 -13.44589 -13.22446 -13.15218 -12.97601 -12.72211 -12.53437 -12.48343 -12.40122 -12.23671 -12.05472 -11.88253 -11.74193 -11.37977 -11.20500 -11.10684 -10.76035 -10.60858 -10.35791 -10.08994 -10.02828 -9.54340 -9.46254 -9.25867 -9.09731 -8.52698 -8.20256 -7.41366 -6.35617 -3.86470 1.05005 2.73014 3.01641 3.06237 3.12750 3.14043 3.67089 3.96932 4.07514 4.10998 4.39209 4.40695 4.62494 4.68749 4.75208 4.97190 5.00535 5.18099 5.18760 5.23623 5.25578 5.35372 5.43571 5.47375 5.50873 5.60299 5.69736 5.70689 5.71570 5.82617 5.84755 5.88621 6.00353 6.01549 6.11968 6.18234 6.24160 6.24616 6.38811 6.50537 6.67876 7.35352 7.47908 7.53808 7.77947 8.11146 8.14610 8.54231 8.90391 9.38717 9.77337 10.77230 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016744 B = 0.003036 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.814553 B = 9221.200147 C =10338.127619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.082 4.082 3 C -0.123 4.123 4 C -0.016 4.016 5 F -0.141 7.141 6 C 0.581 3.419 7 O -0.511 6.511 8 N -0.621 5.621 9 C 0.100 3.900 10 C -0.116 4.116 11 H 0.097 0.903 12 C -0.087 4.087 13 C 0.037 3.963 14 N -0.498 5.498 15 C 0.043 3.957 16 C 0.417 3.583 17 O -0.578 6.578 18 N -0.584 5.584 19 C -0.306 4.306 20 H 0.119 0.881 21 C 0.042 3.958 22 N -0.879 5.879 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.268 1.268 27 C 0.037 3.963 28 C 0.147 3.853 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.371 0.629 45 H 0.274 0.726 46 H 0.077 0.923 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.499 19.429 -9.367 25.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.085 4.085 3 C -0.179 4.179 4 C -0.038 4.038 5 F -0.120 7.120 6 C 0.370 3.630 7 O -0.388 6.388 8 N -0.356 5.356 9 C -0.024 4.024 10 C -0.135 4.135 11 H 0.116 0.884 12 C -0.125 4.125 13 C -0.091 4.091 14 N -0.221 5.221 15 C -0.089 4.089 16 C 0.203 3.797 17 O -0.463 6.463 18 N -0.222 5.222 19 C -0.435 4.435 20 H 0.136 0.864 21 C -0.161 4.161 22 N -0.519 5.519 23 Si 0.706 3.294 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.194 1.194 27 C -0.091 4.091 28 C 0.044 3.956 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.204 0.796 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.214 19.411 -9.649 25.387 hybrid contribution -0.786 0.053 0.796 1.120 sum 12.429 19.464 -8.853 24.733 Atomic orbital electron populations 1.20899 0.88737 1.01559 1.04807 1.22683 0.98126 0.93464 0.94238 1.20898 1.00210 0.93799 1.03010 1.19490 0.76895 0.94470 1.12903 1.91422 1.28993 1.97143 1.94465 1.17449 0.86600 0.81424 0.77479 1.90818 1.12069 1.85670 1.50272 1.49254 1.09104 1.05096 1.72118 1.23380 0.84153 0.94414 1.00407 1.22507 0.96911 0.97749 0.96368 0.88445 1.20741 0.97717 1.01649 0.92391 1.21889 0.89866 1.00807 0.96568 1.62328 1.02697 1.55163 1.01883 1.22063 0.93312 0.93734 0.99771 1.21122 0.83486 0.91235 0.83846 1.90422 1.50125 1.53717 1.52040 1.42420 1.26674 1.08045 1.45073 1.19443 1.12690 0.81865 1.29548 0.86357 1.25074 0.97372 0.96249 0.97435 1.69629 1.29098 1.14211 1.38960 0.86667 0.81339 0.81314 0.80092 1.19537 1.20147 1.19392 1.22249 0.96425 1.01297 0.89122 1.22301 0.95797 0.78945 0.98526 0.89117 0.89308 0.92421 0.89786 0.90250 0.90507 0.91009 0.89924 0.90064 0.92206 0.91470 0.91827 0.90646 0.89570 0.89074 0.79591 0.91570 0.90488 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 8.33 36.01 0.30 -0.77 16 2 C -0.08 -0.85 6.12 -101.13 -0.62 -1.47 16 3 C -0.12 -0.91 9.78 36.00 0.35 -0.56 16 4 C -0.02 -0.19 7.35 -37.68 -0.28 -0.47 16 5 F -0.14 -1.64 14.52 2.25 0.03 -1.61 16 6 C 0.58 8.30 7.91 -12.58 -0.10 8.20 16 7 O -0.51 -8.37 12.96 5.27 0.07 -8.30 16 8 N -0.62 -8.09 3.31 -186.46 -0.62 -8.71 16 9 C 0.10 0.99 7.09 -10.90 -0.08 0.91 16 10 C -0.12 -1.28 4.57 -90.98 -0.42 -1.70 16 11 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 12 C -0.09 -1.08 5.73 -28.03 -0.16 -1.24 16 13 C 0.04 0.58 4.89 -4.77 -0.02 0.56 16 14 N -0.50 -8.29 4.74 -237.78 -1.13 -9.41 16 15 C 0.04 0.76 5.83 -4.98 -0.03 0.73 16 16 C 0.42 9.24 7.18 -10.99 -0.08 9.16 16 17 O -0.58 -14.37 11.19 5.55 0.06 -14.30 16 18 N -0.58 -13.86 5.09 -10.97 -0.06 -13.91 16 19 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 20 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 21 C 0.04 1.15 5.50 -17.46 -0.10 1.05 16 22 N -0.88 -25.60 13.96 55.50 0.77 -24.82 16 23 Si 0.88 19.48 27.74 -169.99 -4.71 14.77 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 27 C 0.04 0.62 4.44 -4.17 -0.02 0.60 16 28 C 0.15 1.94 4.24 -76.26 -0.32 1.61 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.09 1.07 7.22 -51.93 -0.38 0.70 16 31 H 0.06 0.45 7.94 -51.93 -0.41 0.04 16 32 H 0.08 0.96 7.22 -51.93 -0.38 0.58 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.46 8.05 -51.93 -0.42 0.04 16 35 H 0.07 0.54 7.55 -51.93 -0.39 0.15 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.78 6.97 -51.93 -0.36 0.42 16 38 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 41 H 0.08 1.44 5.63 -51.93 -0.29 1.15 16 42 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 43 H 0.09 1.54 8.07 -51.93 -0.42 1.12 16 44 H 0.37 7.87 5.76 -40.82 -0.24 7.64 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 46 H 0.08 1.37 7.64 -51.93 -0.40 0.97 16 47 H 0.09 1.69 5.71 -51.93 -0.30 1.39 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -32.31 371.16 -8.57 -40.89 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -6.87 Total: 11.93 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -1.72 Total: 7.90 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -1.02 Total: -56.86 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.13 Total: -22.60 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.03 Total: -1.61 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.77 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.31 -8.57 -40.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221477719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.564 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds