Wall clock time and date at job start Tue Mar 31 2020 23:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50699 * 120.00213 * 2 1 4 4 C 1.33120 * 119.99601 * 179.97438 * 2 1 3 5 5 F 1.35098 * 119.99644 * 180.02562 * 4 2 1 6 6 C 1.47295 * 120.00305 * 0.02562 * 4 2 1 7 7 O 1.21609 * 120.00009 * 359.97438 * 6 4 2 8 8 N 1.34773 * 120.00266 * 180.02562 * 6 4 2 9 9 C 1.47233 * 136.44241 * 359.62906 * 8 6 4 10 10 C 1.53990 * 87.67373 * 151.99404 * 9 8 6 11 11 H 1.09002 * 114.92671 * 140.30364 * 10 9 8 12 12 C 1.51756 * 112.33561 * 271.50890 * 10 9 8 13 13 C 1.51677 * 113.41645 * 124.68293 * 12 10 9 14 14 N 1.46395 * 111.36366 * 312.63577 * 13 12 10 15 15 C 1.46900 * 111.00173 * 188.95126 * 14 13 12 16 16 C 1.50696 * 109.47009 * 301.19974 * 15 14 13 17 17 O 1.21294 * 120.00266 * 354.13626 * 16 15 14 18 18 N 1.34780 * 120.00411 * 174.13583 * 16 15 14 19 19 C 1.37093 * 120.00068 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00657 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99694 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99989 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00148 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47623 * 89.99485 * 23 21 19 25 25 H 1.48507 * 109.47239 * 209.99536 * 23 21 19 26 26 H 1.48502 * 109.47052 * 329.99408 * 23 21 19 27 27 C 1.46936 * 110.50478 * 65.34963 * 14 13 12 28 28 C 1.46594 * 136.45059 * 179.97438 * 8 6 4 29 29 H 1.09001 * 112.83027 * 95.07638 * 28 8 6 30 30 H 1.08997 * 109.47725 * 240.00296 * 1 2 3 31 31 H 1.09000 * 109.47568 * 0.02562 * 1 2 3 32 32 H 1.09006 * 109.46945 * 120.00233 * 1 2 3 33 33 H 1.09002 * 109.47033 * 270.00151 * 3 2 1 34 34 H 1.09003 * 109.46745 * 29.99717 * 3 2 1 35 35 H 1.08993 * 109.46974 * 149.99787 * 3 2 1 36 36 H 1.09005 * 113.51182 * 266.68871 * 9 8 6 37 37 H 1.08998 * 113.51992 * 37.29129 * 9 8 6 38 38 H 1.08994 * 108.69593 * 3.65604 * 12 10 9 39 39 H 1.09003 * 108.68464 * 245.69643 * 12 10 9 40 40 H 1.08999 * 109.09995 * 192.15245 * 13 12 10 41 41 H 1.08997 * 109.05624 * 73.08648 * 13 12 10 42 42 H 1.09000 * 109.47537 * 61.19682 * 15 14 13 43 43 H 1.08997 * 109.47220 * 181.20051 * 15 14 13 44 44 H 0.97004 * 119.99529 * 359.97438 * 18 16 15 45 45 H 0.97001 * 119.99694 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.49710 * 175.67315 * 27 14 13 47 47 H 1.09005 * 109.51268 * 55.61164 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1725 -1.1529 0.0005 5 9 3.5235 -1.1529 0.0010 6 6 1.4360 -2.4285 0.0005 7 8 0.2199 -2.4285 0.0005 8 7 2.1098 -3.5957 0.0016 9 6 3.5219 -4.0126 -0.0037 10 6 3.0809 -5.2951 0.7256 11 1 3.5839 -6.2053 0.3991 12 6 3.0732 -5.1272 2.2338 13 6 1.7375 -5.4604 2.8706 14 7 0.6314 -4.8225 2.1546 15 6 -0.6297 -4.9721 2.8929 16 6 -0.9281 -6.4366 3.0858 17 8 -0.2239 -7.2733 2.5610 18 7 -1.9773 -6.8169 3.8415 19 6 -2.2490 -8.1492 4.0165 20 1 -1.6221 -8.8941 3.5492 21 6 -3.3304 -8.5411 4.7960 22 7 -3.5912 -9.8182 4.9634 23 14 -4.4144 -7.2527 5.6048 24 1 -5.5247 -6.8927 4.6868 25 1 -4.9737 -7.7984 6.8677 26 1 -3.6067 -6.0428 5.9032 27 6 0.5142 -5.3695 0.7959 28 6 1.7663 -5.0208 0.0024 29 1 1.7540 -5.4535 -0.9980 30 1 -0.3634 -0.5138 0.8899 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 2.4422 1.6197 -1.0277 34 1 1.6714 2.0647 0.5138 35 1 3.2129 1.1747 0.5138 36 1 3.9178 -4.1947 -1.0029 37 1 4.1671 -3.3709 0.5963 38 1 3.3256 -4.0939 2.4716 39 1 3.8361 -5.7777 2.6615 40 1 1.7393 -5.1152 3.9045 41 1 1.5958 -6.5410 2.8558 42 1 -0.5410 -4.4883 3.8656 43 1 -1.4385 -4.5079 2.3286 44 1 -2.5402 -6.1478 4.2615 45 1 -4.3464 -10.0918 5.5073 46 1 -0.3591 -4.9403 0.3049 47 1 0.4064 -6.4530 0.8477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221477719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:37 Heat of formation + Delta-G solvation = -63.811232 kcal Electronic energy + Delta-G solvation = -30968.979788 eV Core-core repulsion = 26681.675729 eV Total energy + Delta-G solvation = -4287.304059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.81565 -42.22494 -40.60898 -39.55752 -37.30745 -36.01241 -35.78045 -33.82390 -33.12493 -31.18285 -30.05543 -28.79674 -28.04827 -27.36947 -25.52197 -24.80785 -22.95190 -22.28006 -21.36275 -20.39715 -19.94982 -19.30983 -18.41641 -17.78132 -17.43423 -17.13340 -16.93948 -16.67529 -16.51219 -16.23072 -15.84876 -15.62776 -15.23694 -15.06310 -14.90776 -14.66493 -14.47650 -14.28148 -14.16614 -13.88192 -13.62096 -13.51410 -13.33083 -13.22021 -13.18038 -13.13960 -13.08109 -12.62110 -12.47169 -12.44230 -12.21223 -12.03356 -11.97844 -11.63150 -11.32799 -11.19233 -11.00723 -10.49887 -10.25126 -9.98971 -9.46895 -8.98165 -8.45669 -6.05416 0.18632 1.27222 1.31260 1.40318 1.77877 1.87024 2.13199 2.18770 2.89344 2.95344 3.08274 3.11242 3.30348 3.60374 3.76970 3.91514 3.95457 4.11284 4.18143 4.28692 4.30871 4.37841 4.44527 4.50203 4.53718 4.55964 4.65251 4.71197 4.72277 4.82841 4.85936 4.89066 4.96631 5.04605 5.07564 5.07576 5.10935 5.18786 5.35243 5.42659 5.49205 5.60131 5.89043 6.00263 6.12595 6.53688 6.80400 6.83743 7.12200 7.34591 7.89053 8.71634 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016744 B = 0.003036 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.814553 B = 9221.200147 C =10338.127619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.065 4.065 3 C -0.122 4.122 4 C -0.039 4.039 5 F -0.139 7.139 6 C 0.570 3.430 7 O -0.545 6.545 8 N -0.627 5.627 9 C 0.111 3.889 10 C -0.113 4.113 11 H 0.120 0.880 12 C -0.083 4.083 13 C 0.038 3.962 14 N -0.491 5.491 15 C 0.051 3.949 16 C 0.422 3.578 17 O -0.606 6.606 18 N -0.589 5.589 19 C -0.326 4.326 20 H 0.058 0.942 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.961 3.039 24 H -0.259 1.259 25 H -0.273 1.273 26 H -0.235 1.235 27 C 0.045 3.955 28 C 0.139 3.861 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.038 0.962 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.387 0.613 45 H 0.279 0.721 46 H 0.058 0.942 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.593 23.343 -9.292 29.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.068 4.068 3 C -0.178 4.178 4 C -0.061 4.061 5 F -0.118 7.118 6 C 0.361 3.639 7 O -0.425 6.425 8 N -0.361 5.361 9 C -0.011 4.011 10 C -0.132 4.132 11 H 0.138 0.862 12 C -0.121 4.121 13 C -0.090 4.090 14 N -0.213 5.213 15 C -0.081 4.081 16 C 0.209 3.791 17 O -0.492 6.492 18 N -0.230 5.230 19 C -0.455 4.455 20 H 0.076 0.924 21 C -0.212 4.212 22 N -0.572 5.572 23 Si 0.781 3.219 24 H -0.184 1.184 25 H -0.198 1.198 26 H -0.158 1.158 27 C -0.084 4.084 28 C 0.035 3.965 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.131 0.869 43 H 0.121 0.879 44 H 0.223 0.777 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.368 23.338 -9.591 29.036 hybrid contribution -1.051 -1.212 0.678 1.742 sum 13.317 22.126 -8.913 27.319 Atomic orbital electron populations 1.20849 0.88923 1.02814 1.03167 1.23051 0.98190 0.94326 0.91223 1.21006 1.00081 0.92426 1.04280 1.19303 0.77143 0.94001 1.15640 1.91419 1.28534 1.97081 1.94755 1.17880 0.86549 0.82356 0.77072 1.90796 1.13419 1.86315 1.51969 1.49401 1.10566 1.04525 1.71586 1.23495 0.82612 0.93185 1.01811 1.22536 0.95640 0.99584 0.95421 0.86230 1.20720 0.95717 1.02331 0.93305 1.21891 0.91495 0.98319 0.97268 1.62437 1.02392 1.54577 1.01894 1.22168 0.94372 0.90021 1.01521 1.22173 0.82017 0.93139 0.81779 1.90438 1.50838 1.55455 1.52510 1.42279 1.27776 1.06622 1.46298 1.19012 1.12969 0.82933 1.30607 0.92385 1.26078 0.98573 0.99010 0.97528 1.69798 1.30216 1.17076 1.40123 0.85415 0.79024 0.78799 0.78645 1.18363 1.19785 1.15799 1.22082 0.97911 0.98906 0.89517 1.22424 0.94994 0.79830 0.99206 0.87465 0.91244 0.89596 0.91194 0.88608 0.88593 0.90915 0.87225 0.89221 0.91629 0.89675 0.91594 0.94365 0.86937 0.87901 0.77734 0.91119 0.92312 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 8.33 71.24 0.59 -1.34 16 2 C -0.06 -1.20 6.12 -17.60 -0.11 -1.31 16 3 C -0.12 -1.39 9.78 71.24 0.70 -0.69 16 4 C -0.04 -0.88 7.35 23.50 0.17 -0.71 16 5 F -0.14 -2.90 14.52 44.97 0.65 -2.25 16 6 C 0.57 15.79 7.91 86.63 0.69 16.48 16 7 O -0.54 -17.89 12.96 -4.06 -0.05 -17.94 16 8 N -0.63 -15.42 3.31 -862.10 -2.85 -18.27 16 9 C 0.11 1.88 7.09 81.54 0.58 2.46 16 10 C -0.11 -2.26 4.57 -11.02 -0.05 -2.31 16 11 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 12 C -0.08 -1.91 5.73 29.75 0.17 -1.74 16 13 C 0.04 1.21 4.89 85.96 0.42 1.63 16 14 N -0.49 -16.28 4.74 -906.19 -4.29 -20.57 16 15 C 0.05 1.78 5.83 85.56 0.50 2.28 16 16 C 0.42 19.18 7.18 87.66 0.63 19.81 16 17 O -0.61 -31.91 11.19 -3.07 -0.03 -31.94 16 18 N -0.59 -28.37 5.09 -306.99 -1.56 -29.93 16 19 C -0.33 -19.16 10.16 84.04 0.85 -18.30 16 20 H 0.06 4.03 7.39 -2.91 -0.02 4.01 16 21 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 22 N -0.93 -56.41 13.96 21.66 0.30 -56.11 16 23 Si 0.96 39.76 27.74 68.60 1.90 41.66 16 24 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 26 H -0.23 -8.34 6.52 99.48 0.65 -7.69 16 27 C 0.04 1.51 4.44 86.06 0.38 1.89 16 28 C 0.14 3.54 4.24 39.54 0.17 3.71 16 29 H 0.11 2.36 8.14 -2.39 -0.02 2.35 16 30 H 0.07 1.63 7.22 -2.39 -0.02 1.62 16 31 H 0.09 1.11 7.94 -2.39 -0.02 1.09 16 32 H 0.07 1.56 7.22 -2.38 -0.02 1.54 16 33 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 0.76 8.05 -2.39 -0.02 0.74 16 35 H 0.07 0.86 7.55 -2.39 -0.02 0.84 16 36 H 0.11 1.33 8.14 -2.38 -0.02 1.32 16 37 H 0.09 1.43 6.97 -2.39 -0.02 1.41 16 38 H 0.07 1.46 7.45 -2.39 -0.02 1.44 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 2.02 8.06 -2.39 -0.02 2.00 16 41 H 0.04 1.51 5.63 -2.39 -0.01 1.50 16 42 H 0.11 3.37 8.13 -2.39 -0.02 3.35 16 43 H 0.10 3.40 8.07 -2.39 -0.02 3.38 16 44 H 0.39 15.90 5.76 -92.71 -0.53 15.37 16 45 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 46 H 0.06 2.17 7.64 -2.39 -0.02 2.15 16 47 H 0.05 2.22 5.71 -2.38 -0.01 2.20 16 Total: -1.00 -76.67 371.16 0.63 -76.04 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: 0.41 Total: 37.69 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 6.16 Total: 21.61 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -8.40 Total: -124.88 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.09 Total: -49.88 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.65 Total: -2.25 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.90 Total: 41.66 kcal Total: -76.67 0.63 -76.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221477719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.229 kcal (2) G-P(sol) polarization free energy of solvation -76.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds