Wall clock time and date at job start Tue Mar 31 2020 23:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21693 * 120.00183 * 0.02562 * 7 6 5 9 9 C 1.46680 * 120.00113 * 179.97438 * 7 6 5 10 10 C 1.35662 * 126.12913 * 0.02988 * 9 7 6 11 11 N 1.30945 * 114.19202 * 179.97438 * 10 9 7 12 12 C 1.29424 * 117.36358 * 359.97438 * 11 10 9 13 13 C 1.50696 * 124.80528 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47407 * 89.97368 * 13 12 11 15 15 C 1.53010 * 109.47053 * 60.00192 * 14 13 12 16 16 C 1.53000 * 109.47493 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.47465 * 300.00459 * 14 13 12 18 18 S 1.70956 * 110.38889 * 359.72580 * 12 11 10 19 19 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 20 20 C 1.36935 * 120.00239 * 275.00034 * 19 3 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 3 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 29 29 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 31 31 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 32 32 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 33 33 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 34 34 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 35 35 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 36 36 H 1.07997 * 122.90451 * 0.02562 * 10 9 7 37 37 H 1.09005 * 109.47682 * 209.97631 * 13 12 11 38 38 H 1.09002 * 109.47071 * 329.98051 * 13 12 11 39 39 H 1.08998 * 109.46810 * 59.99613 * 15 14 13 40 40 H 1.08996 * 109.47521 * 180.02562 * 15 14 13 41 41 H 1.08998 * 109.46771 * 300.00517 * 15 14 13 42 42 H 1.09002 * 109.46946 * 60.00707 * 16 14 13 43 43 H 1.09006 * 109.47058 * 180.02562 * 16 14 13 44 44 H 1.08994 * 109.47308 * 300.00382 * 16 14 13 45 45 H 1.09007 * 109.46938 * 59.99391 * 17 14 13 46 46 H 1.08996 * 109.47464 * 179.97438 * 17 14 13 47 47 H 1.08996 * 109.46556 * 299.99749 * 17 14 13 48 48 H 0.97004 * 119.99747 * 95.00774 * 19 3 2 49 49 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1659 2.1454 -0.2598 9 6 5.8844 4.4373 0.0324 10 6 5.1300 5.5481 0.2254 11 7 5.8194 6.6590 0.2985 12 6 7.1053 6.5698 0.1817 13 6 8.0573 7.7365 0.2402 14 6 8.4969 7.9640 1.6879 15 6 9.1967 6.7082 2.2117 16 6 9.4640 9.1482 1.7472 17 6 7.2705 8.2626 2.5525 18 16 7.5717 4.9401 -0.0399 19 7 1.6524 2.0974 1.2518 20 6 0.4156 2.6734 1.3688 21 1 -0.2743 2.6446 0.5384 22 6 0.0486 3.2945 2.5548 23 7 0.8874 3.3249 3.5687 24 14 -1.6388 4.0796 2.7147 25 1 -1.7858 4.6654 4.0714 26 1 -1.7857 5.1494 1.6951 27 1 -2.6865 3.0484 2.5046 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9954 0.8311 0.6659 34 1 3.8498 1.0377 -1.0961 35 1 3.4410 3.5483 0.1315 36 1 4.0539 5.5187 0.3121 37 1 8.9311 7.5239 -0.3757 38 1 7.5588 8.6312 -0.1328 39 1 10.0704 6.4954 1.5957 40 1 9.5095 6.8700 3.2432 41 1 8.5081 5.8643 2.1694 42 1 8.9659 10.0431 1.3740 43 1 9.7775 9.3099 2.7786 44 1 10.3376 8.9351 1.1314 45 1 6.5819 7.4186 2.5102 46 1 7.5837 8.4242 3.5840 47 1 6.7721 9.1572 2.1794 48 1 2.2720 2.1231 1.9978 49 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267826573.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:22 Heat of formation + Delta-G solvation = -6.573722 kcal Electronic energy + Delta-G solvation = -27367.813273 eV Core-core repulsion = 23649.204395 eV Total energy + Delta-G solvation = -3718.608878 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.26701 -39.23045 -37.62442 -36.84180 -33.95391 -32.68316 -31.43558 -29.67847 -28.75720 -27.60094 -27.47576 -27.23116 -24.54627 -23.64339 -22.76547 -21.50756 -20.28858 -19.74393 -19.02760 -18.00238 -17.53538 -17.08106 -15.77409 -15.64846 -15.27229 -14.94806 -14.84527 -14.66690 -14.37584 -14.18911 -13.66455 -13.66229 -13.52306 -13.24685 -13.18011 -12.78767 -12.71491 -12.33705 -12.08005 -11.99876 -11.87832 -11.68079 -11.61359 -11.20543 -11.05438 -11.03384 -10.96195 -10.82849 -10.63187 -10.39886 -10.22380 -10.13248 -9.91560 -9.55350 -9.46458 -9.24444 -9.00881 -8.98214 -8.75367 -7.14438 -6.15206 -3.17590 0.20316 1.08419 1.60996 2.44856 3.28846 3.45417 3.48028 3.50349 3.67924 3.87792 4.43208 4.47297 4.59309 4.60600 4.90278 4.95863 5.14958 5.21199 5.21796 5.28120 5.32639 5.34412 5.43003 5.50167 5.52684 5.53695 5.68099 5.73755 5.78056 5.80204 5.85441 5.86438 5.92569 5.99029 6.03234 6.07457 6.21983 6.27136 6.41628 6.46968 6.51253 6.71533 6.90635 7.18363 7.55307 7.68786 7.74693 8.30795 8.68159 9.12344 9.99345 10.14053 11.31466 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.002967 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.985710 B = 9434.891353 C =11174.405927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.056 0.944 5 C 0.115 3.885 6 N -0.699 5.699 7 C 0.590 3.410 8 O -0.549 6.549 9 C -0.292 4.292 10 C 0.097 3.903 11 N -0.470 5.470 12 C 0.047 3.953 13 C -0.037 4.037 14 C -0.063 4.063 15 C -0.154 4.154 16 C -0.139 4.139 17 C -0.142 4.142 18 S 0.214 5.786 19 N -0.733 5.733 20 C -0.330 4.330 21 H 0.068 0.932 22 C -0.041 4.041 23 N -0.940 5.940 24 Si 1.075 2.925 25 H -0.286 1.286 26 H -0.295 1.295 27 H -0.295 1.295 28 H 0.040 0.960 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.410 0.590 36 H 0.184 0.816 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.368 0.632 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.945 7.788 -7.506 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.074 0.926 5 C -0.010 4.010 6 N -0.351 5.351 7 C 0.375 3.625 8 O -0.429 6.429 9 C -0.417 4.417 10 C -0.061 4.061 11 N -0.184 5.184 12 C -0.228 4.228 13 C -0.078 4.078 14 C -0.065 4.065 15 C -0.212 4.212 16 C -0.196 4.196 17 C -0.199 4.199 18 S 0.472 5.528 19 N -0.376 5.376 20 C -0.460 4.460 21 H 0.086 0.914 22 C -0.240 4.240 23 N -0.585 5.585 24 Si 0.906 3.094 25 H -0.211 1.211 26 H -0.223 1.223 27 H -0.223 1.223 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.247 0.753 36 H 0.201 0.799 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.201 0.799 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.062 7.985 -6.833 19.195 hybrid contribution -0.309 -0.707 -0.670 1.022 sum 15.754 7.278 -7.503 18.906 Atomic orbital electron populations 1.21762 0.95502 0.99650 1.03393 1.22053 0.97182 0.98125 1.00016 1.20514 0.89549 0.92938 0.91198 0.92602 1.21770 0.95803 0.81902 1.01489 1.45756 1.06243 1.11200 1.71866 1.16723 0.82894 0.85775 0.77134 1.90810 1.56019 1.45277 1.50786 1.25802 0.97678 0.99583 1.18611 1.22310 1.01809 0.85171 0.96777 1.66155 1.05018 1.30681 1.16533 1.27439 0.94458 0.99329 1.01534 1.20481 0.95625 0.93837 0.97845 1.20533 0.96301 0.96197 0.93483 1.22089 1.00427 0.97094 1.01563 1.21843 0.98499 0.97042 1.02222 1.21888 0.96687 1.02529 0.98804 1.83936 1.04913 1.00632 1.63355 1.42472 1.16872 1.67062 1.11239 1.19979 0.92602 1.32443 1.01019 0.91438 1.25697 1.05651 1.00352 0.92269 1.70894 1.08404 1.47250 1.31915 0.83306 0.74359 0.75895 0.75850 1.21125 1.22260 1.22294 0.94070 0.94841 0.89579 0.93724 0.92655 0.91602 0.91394 0.75255 0.79924 0.89486 0.88423 0.92284 0.91938 0.92386 0.92295 0.92146 0.92479 0.92069 0.92714 0.92223 0.79877 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.15 0.34 -2.26 16 2 C -0.13 -2.27 5.61 -26.73 -0.15 -2.42 16 3 C 0.17 3.07 2.59 -67.93 -0.18 2.89 16 4 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 5 C 0.11 1.92 5.23 -4.04 -0.02 1.90 16 6 N -0.70 -11.65 5.37 -61.62 -0.33 -11.99 16 7 C 0.59 10.17 7.79 -12.85 -0.10 10.07 16 8 O -0.55 -10.82 16.97 5.20 0.09 -10.73 16 9 C -0.29 -4.42 6.48 -37.10 -0.24 -4.66 16 10 C 0.10 1.41 10.93 -18.85 -0.21 1.21 16 11 N -0.47 -6.50 9.66 -11.50 -0.11 -6.61 16 12 C 0.05 0.55 4.93 -13.29 -0.07 0.48 16 13 C -0.04 -0.31 4.86 -27.89 -0.14 -0.45 16 14 C -0.06 -0.52 0.80 -154.50 -0.12 -0.64 16 15 C -0.15 -1.30 8.01 37.16 0.30 -1.00 16 16 C -0.14 -0.87 8.47 37.16 0.31 -0.55 16 17 C -0.14 -1.42 8.18 37.16 0.30 -1.12 16 18 S 0.21 2.63 21.35 -107.50 -2.30 0.34 16 19 N -0.73 -16.33 4.50 -53.43 -0.24 -16.57 16 20 C -0.33 -8.31 7.75 -15.06 -0.12 -8.42 16 21 H 0.07 1.69 7.32 -52.48 -0.38 1.30 16 22 C -0.04 -1.12 5.50 -17.43 -0.10 -1.22 16 23 N -0.94 -27.53 13.70 55.49 0.76 -26.77 16 24 Si 1.07 24.76 29.92 -169.99 -5.09 19.68 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.30 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.30 -6.56 7.11 56.52 0.40 -6.16 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.83 5.99 -51.93 -0.31 1.52 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.41 6.85 6.85 -40.82 -0.28 6.57 16 36 H 0.18 2.55 7.15 -52.49 -0.38 2.18 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.59 6.01 -51.93 -0.31 0.28 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.77 6.64 -51.92 -0.34 0.42 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.37 8.78 6.63 -40.82 -0.27 8.51 16 49 H 0.26 7.41 6.77 -40.82 -0.28 7.13 16 LS Contribution 402.68 15.07 6.07 6.07 Total: -1.00 -30.39 402.68 -9.43 -39.82 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -8.11 Total: 12.96 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -0.17 Total: -6.20 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.08 Total: -61.94 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.09 Total: 19.68 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.30 Total: 0.34 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.39 -9.43 -39.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267826573.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.247 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds