Wall clock time and date at job start Tue Mar 31 2020 23:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21693 * 120.00183 * 0.02562 * 7 6 5 9 9 C 1.46680 * 120.00113 * 179.97438 * 7 6 5 10 10 C 1.35662 * 126.12913 * 0.02988 * 9 7 6 11 11 N 1.30945 * 114.19202 * 179.97438 * 10 9 7 12 12 C 1.29424 * 117.36358 * 359.97438 * 11 10 9 13 13 C 1.50696 * 124.80528 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47407 * 89.97368 * 13 12 11 15 15 C 1.53010 * 109.47053 * 60.00192 * 14 13 12 16 16 C 1.53000 * 109.47493 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.47465 * 300.00459 * 14 13 12 18 18 S 1.70956 * 110.38889 * 359.72580 * 12 11 10 19 19 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 20 20 C 1.36935 * 120.00239 * 275.00034 * 19 3 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 3 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 29 29 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 31 31 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 32 32 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 33 33 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 34 34 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 35 35 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 36 36 H 1.07997 * 122.90451 * 0.02562 * 10 9 7 37 37 H 1.09005 * 109.47682 * 209.97631 * 13 12 11 38 38 H 1.09002 * 109.47071 * 329.98051 * 13 12 11 39 39 H 1.08998 * 109.46810 * 59.99613 * 15 14 13 40 40 H 1.08996 * 109.47521 * 180.02562 * 15 14 13 41 41 H 1.08998 * 109.46771 * 300.00517 * 15 14 13 42 42 H 1.09002 * 109.46946 * 60.00707 * 16 14 13 43 43 H 1.09006 * 109.47058 * 180.02562 * 16 14 13 44 44 H 1.08994 * 109.47308 * 300.00382 * 16 14 13 45 45 H 1.09007 * 109.46938 * 59.99391 * 17 14 13 46 46 H 1.08996 * 109.47464 * 179.97438 * 17 14 13 47 47 H 1.08996 * 109.46556 * 299.99749 * 17 14 13 48 48 H 0.97004 * 119.99747 * 95.00774 * 19 3 2 49 49 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1659 2.1454 -0.2598 9 6 5.8844 4.4373 0.0324 10 6 5.1300 5.5481 0.2254 11 7 5.8194 6.6590 0.2985 12 6 7.1053 6.5698 0.1817 13 6 8.0573 7.7365 0.2402 14 6 8.4969 7.9640 1.6879 15 6 9.1967 6.7082 2.2117 16 6 9.4640 9.1482 1.7472 17 6 7.2705 8.2626 2.5525 18 16 7.5717 4.9401 -0.0399 19 7 1.6524 2.0974 1.2518 20 6 0.4156 2.6734 1.3688 21 1 -0.2743 2.6446 0.5384 22 6 0.0486 3.2945 2.5548 23 7 0.8874 3.3249 3.5687 24 14 -1.6388 4.0796 2.7147 25 1 -1.7858 4.6654 4.0714 26 1 -1.7857 5.1494 1.6951 27 1 -2.6865 3.0484 2.5046 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9954 0.8311 0.6659 34 1 3.8498 1.0377 -1.0961 35 1 3.4410 3.5483 0.1315 36 1 4.0539 5.5187 0.3121 37 1 8.9311 7.5239 -0.3757 38 1 7.5588 8.6312 -0.1328 39 1 10.0704 6.4954 1.5957 40 1 9.5095 6.8700 3.2432 41 1 8.5081 5.8643 2.1694 42 1 8.9659 10.0431 1.3740 43 1 9.7775 9.3099 2.7786 44 1 10.3376 8.9351 1.1314 45 1 6.5819 7.4186 2.5102 46 1 7.5837 8.4242 3.5840 47 1 6.7721 9.1572 2.1794 48 1 2.2720 2.1231 1.9978 49 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267826573.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:21 Heat of formation + Delta-G solvation = -25.152346 kcal Electronic energy + Delta-G solvation = -27368.618902 eV Core-core repulsion = 23649.204395 eV Total energy + Delta-G solvation = -3719.414508 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.39720 -40.47286 -38.51906 -38.30578 -35.52571 -34.40150 -32.48764 -31.32898 -29.95591 -28.65976 -28.22024 -28.10647 -25.65657 -25.35800 -24.26067 -22.73601 -21.77651 -20.79563 -20.05292 -19.42588 -18.96575 -18.32713 -17.05025 -16.92236 -16.52142 -16.35998 -15.87740 -15.76952 -15.55345 -15.47353 -15.17446 -14.91140 -14.69782 -14.61958 -14.23200 -14.01140 -13.65892 -13.43466 -13.23633 -12.92887 -12.76731 -12.69243 -12.64038 -12.58302 -12.54647 -12.13611 -12.01432 -11.93725 -11.84432 -11.75181 -11.63257 -11.56707 -11.47465 -11.19144 -10.88928 -10.65425 -10.56877 -10.22019 -9.90111 -9.08425 -8.26840 -5.22801 -0.87358 0.05551 0.57246 1.31160 1.61268 1.69139 1.84598 2.01696 2.14760 2.74499 2.96033 3.48300 3.63216 3.71717 3.73259 3.79150 3.82239 3.88402 4.06129 4.18591 4.24836 4.38100 4.46692 4.48132 4.56394 4.62187 4.69422 4.75582 4.79999 4.86642 4.90291 4.92798 4.99538 5.02583 5.04586 5.08034 5.12470 5.19617 5.30365 5.33914 5.41438 5.45777 5.49026 5.64466 5.72717 6.30602 6.51741 6.57558 6.94672 7.13943 8.04067 8.16730 9.23208 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.002967 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.985710 B = 9434.891353 C =11174.405927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.170 3.830 4 H 0.059 0.941 5 C 0.122 3.878 6 N -0.699 5.699 7 C 0.591 3.409 8 O -0.578 6.578 9 C -0.327 4.327 10 C 0.102 3.898 11 N -0.493 5.493 12 C 0.064 3.936 13 C -0.041 4.041 14 C -0.059 4.059 15 C -0.157 4.157 16 C -0.134 4.134 17 C -0.142 4.142 18 S 0.242 5.758 19 N -0.739 5.739 20 C -0.304 4.304 21 H 0.072 0.928 22 C -0.103 4.103 23 N -0.979 5.979 24 Si 1.116 2.884 25 H -0.302 1.302 26 H -0.278 1.278 27 H -0.282 1.282 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.410 0.590 36 H 0.180 0.820 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.030 0.970 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.358 0.642 49 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.090 8.560 -9.267 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.077 0.923 5 C -0.002 4.002 6 N -0.349 5.349 7 C 0.378 3.622 8 O -0.461 6.461 9 C -0.451 4.451 10 C -0.057 4.057 11 N -0.208 5.208 12 C -0.210 4.210 13 C -0.082 4.082 14 C -0.061 4.061 15 C -0.214 4.214 16 C -0.191 4.191 17 C -0.199 4.199 18 S 0.501 5.499 19 N -0.382 5.382 20 C -0.436 4.436 21 H 0.090 0.910 22 C -0.294 4.294 23 N -0.628 5.628 24 Si 0.944 3.056 25 H -0.228 1.228 26 H -0.205 1.205 27 H -0.209 1.209 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.247 0.753 36 H 0.197 0.803 37 H 0.134 0.866 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.049 0.951 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.190 0.810 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.210 8.731 -8.654 21.150 hybrid contribution -0.594 -0.948 -0.179 1.133 sum 16.616 7.783 -8.833 20.364 Atomic orbital electron populations 1.21684 0.95846 1.00605 1.01799 1.21977 0.96756 0.97057 1.01146 1.20660 0.90576 0.93421 0.89225 0.92349 1.21687 0.94476 0.81976 1.02050 1.45745 1.06322 1.11137 1.71689 1.16943 0.82614 0.86376 0.76289 1.90779 1.56553 1.46314 1.52420 1.25682 0.99630 0.98608 1.21190 1.22325 1.01899 0.85425 0.96032 1.66220 1.06087 1.30374 1.18071 1.28089 0.94257 1.00088 0.98574 1.20772 0.95954 0.92769 0.98656 1.20524 0.95845 0.97088 0.92599 1.22122 1.00588 0.96324 1.02378 1.21809 0.98424 0.96034 1.02860 1.21892 0.97094 1.01218 0.99734 1.83760 1.02850 1.00555 1.62734 1.42594 1.15879 1.67347 1.12360 1.20209 0.93163 1.29858 1.00328 0.91001 1.26810 1.08001 1.01993 0.92621 1.70999 1.08584 1.49887 1.33301 0.82741 0.71746 0.75890 0.75264 1.22847 1.20452 1.20853 0.93219 0.92753 0.93383 0.90405 0.93641 0.92626 0.89559 0.75345 0.80306 0.86559 0.87525 0.90444 0.91565 0.94584 0.91748 0.91920 0.90825 0.95079 0.92302 0.92157 0.81014 0.94708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.18 71.98 0.66 -4.17 16 2 C -0.13 -4.19 5.61 30.59 0.17 -4.02 16 3 C 0.17 6.05 2.59 44.99 0.12 6.17 16 4 H 0.06 2.09 8.08 -2.38 -0.02 2.07 16 5 C 0.12 4.04 5.23 86.38 0.45 4.49 16 6 N -0.70 -23.58 5.37 -467.08 -2.51 -26.09 16 7 C 0.59 20.69 7.79 86.45 0.67 21.37 16 8 O -0.58 -22.96 16.97 -4.33 -0.07 -23.03 16 9 C -0.33 -10.02 6.48 23.88 0.15 -9.86 16 10 C 0.10 3.04 10.93 84.23 0.92 3.96 16 11 N -0.49 -13.61 9.66 -190.31 -1.84 -15.45 16 12 C 0.06 1.42 4.93 88.46 0.44 1.85 16 13 C -0.04 -0.59 4.86 29.85 0.15 -0.45 16 14 C -0.06 -0.84 0.80 -52.18 -0.04 -0.88 16 15 C -0.16 -2.36 8.01 71.99 0.58 -1.79 16 16 C -0.13 -1.27 8.47 71.98 0.61 -0.66 16 17 C -0.14 -2.75 8.18 71.98 0.59 -2.17 16 18 S 0.24 5.79 21.35 -56.49 -1.21 4.58 16 19 N -0.74 -33.29 4.50 -322.94 -1.45 -34.75 16 20 C -0.30 -15.37 7.75 84.03 0.65 -14.72 16 21 H 0.07 3.54 7.32 -2.91 -0.02 3.52 16 22 C -0.10 -5.63 5.50 84.86 0.47 -5.16 16 23 N -0.98 -59.09 13.70 21.65 0.30 -58.79 16 24 Si 1.12 50.38 29.92 68.60 2.05 52.43 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 2.00 5.99 -2.38 -0.01 1.98 16 31 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.41 14.01 6.85 -92.71 -0.63 13.37 16 36 H 0.18 5.25 7.15 -2.91 -0.02 5.23 16 37 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.04 0.70 6.01 -2.39 -0.01 0.69 16 42 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 44 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.03 0.78 6.64 -2.38 -0.02 0.77 16 46 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.36 17.62 6.63 -92.71 -0.61 17.01 16 49 H 0.24 14.68 6.77 -92.71 -0.63 14.05 16 Total: -1.00 -66.76 402.68 1.70 -65.07 By element: Atomic # 1 Polarization: 42.21 SS G_CDS: -0.15 Total: 42.05 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 6.58 Total: -6.03 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -5.51 Total: -135.08 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.07 Total: -23.03 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.05 Total: 52.43 kcal Atomic # 16 Polarization: 5.79 SS G_CDS: -1.21 Total: 4.58 kcal Total: -66.76 1.70 -65.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267826573.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.916 kcal (2) G-P(sol) polarization free energy of solvation -66.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds