Wall clock time and date at job start Tue Mar 31 2020 22:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30943 * 122.90117 * 2 1 4 4 C 1.29432 * 117.36414 * 180.02562 * 3 2 1 5 5 C 1.50696 * 124.80483 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46998 * 60.02859 * 5 4 3 7 7 C 1.53003 * 109.47448 * 180.02562 * 5 4 3 8 8 C 1.53004 * 109.47528 * 300.02888 * 5 4 3 9 9 S 1.70951 * 110.39066 * 359.72869 * 4 3 2 10 10 C 1.35663 * 122.90785 * 180.02562 * 2 1 3 11 11 C 1.46679 * 126.12650 * 359.95730 * 10 2 1 12 12 O 1.21690 * 120.00308 * 6.93041 * 11 10 2 13 13 N 1.34779 * 119.99704 * 186.93238 * 11 10 2 14 14 C 1.46508 * 120.00075 * 5.92705 * 13 11 10 15 15 C 1.46499 * 120.00031 * 185.93079 * 13 11 10 16 16 H 1.08995 * 109.47001 * 359.97438 * 15 13 11 17 17 C 1.53004 * 109.46861 * 240.00019 * 15 13 11 18 18 C 1.52997 * 109.47445 * 119.99790 * 15 13 11 19 19 N 1.46497 * 109.47220 * 305.00100 * 18 15 13 20 20 C 1.36938 * 120.00237 * 179.97438 * 19 18 15 21 21 H 1.07993 * 120.00114 * 359.97438 * 20 19 18 22 22 C 1.38808 * 119.99859 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00032 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00269 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46881 * 90.00464 * 24 22 20 26 26 H 1.48500 * 109.47442 * 210.00107 * 24 22 20 27 27 H 1.48493 * 109.47359 * 330.00575 * 24 22 20 28 28 H 1.08997 * 109.47037 * 269.95675 * 1 2 3 29 29 H 1.08997 * 109.47423 * 29.95750 * 1 2 3 30 30 H 1.09007 * 109.46871 * 149.96012 * 1 2 3 31 31 H 1.08993 * 109.47077 * 60.00102 * 6 5 4 32 32 H 1.09004 * 109.47270 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.47351 * 299.99576 * 6 5 4 34 34 H 1.08997 * 109.47003 * 59.99747 * 7 5 4 35 35 H 1.08992 * 109.47679 * 180.02562 * 7 5 4 36 36 H 1.08999 * 109.46506 * 300.00523 * 7 5 4 37 37 H 1.08998 * 109.46847 * 59.99533 * 8 5 4 38 38 H 1.09001 * 109.47076 * 180.02562 * 8 5 4 39 39 H 1.09005 * 109.46937 * 299.99875 * 8 5 4 40 40 H 1.08998 * 109.47117 * 275.94311 * 14 13 11 41 41 H 1.09002 * 109.46841 * 155.94071 * 14 13 11 42 42 H 1.08996 * 109.46535 * 35.93990 * 14 13 11 43 43 H 1.08994 * 109.47244 * 59.99973 * 17 15 13 44 44 H 1.09003 * 109.46679 * 179.97438 * 17 15 13 45 45 H 1.09001 * 109.47104 * 299.99195 * 17 15 13 46 46 H 1.09007 * 109.47154 * 64.99891 * 18 15 13 47 47 H 1.08996 * 109.47131 * 184.99919 * 18 15 13 48 48 H 0.97007 * 119.99790 * 359.97438 * 19 18 15 49 49 H 0.97007 * 120.00478 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2182 1.0994 0.0000 4 6 3.5065 0.9745 -0.0005 5 6 4.4820 2.1231 -0.0012 6 6 4.2634 2.9786 1.2484 7 6 5.9117 1.5781 -0.0023 8 6 4.2615 2.9790 -1.2501 9 16 3.9447 -0.6778 0.0065 10 6 2.2440 -1.1389 -0.0005 11 6 1.7192 -2.5086 -0.0002 12 8 0.5245 -2.7025 -0.1267 13 7 2.5602 -3.5525 0.1401 14 6 3.9786 -3.3177 0.4220 15 6 2.0560 -4.9219 0.0106 16 1 0.9863 -4.8971 -0.1970 17 6 2.3044 -5.6822 1.3149 18 6 2.7825 -5.6265 -1.1368 19 7 2.6442 -4.8349 -2.3617 20 6 3.2168 -5.2706 -3.5268 21 1 3.7707 -6.1975 -3.5427 22 6 3.0861 -4.5202 -4.6873 23 7 3.6361 -4.9391 -5.8073 24 14 2.1286 -2.9165 -4.6598 25 1 3.0481 -1.7965 -4.3352 26 1 1.5153 -2.6832 -5.9919 27 1 1.0613 -2.9948 -3.6303 28 1 -0.3633 -0.0008 1.0276 29 1 -0.3634 0.8903 -0.5131 30 1 -0.3633 -0.8897 -0.5145 31 1 4.4206 2.3689 2.1381 32 1 4.9687 3.8097 1.2477 33 1 3.2450 3.3670 1.2492 34 1 6.0675 0.9686 -0.8924 35 1 6.6173 2.4088 -0.0023 36 1 6.0687 0.9684 0.8875 37 1 3.2430 3.3672 -1.2493 38 1 4.9675 3.8095 -1.2507 39 1 4.4173 2.3695 -2.1403 40 1 4.5087 -3.1317 -0.5120 41 1 4.4017 -4.1948 0.9116 42 1 4.0804 -2.4518 1.0762 43 1 1.7868 -5.1802 2.1323 44 1 1.9289 -6.7009 1.2187 45 1 3.3741 -5.7070 1.5229 46 1 3.8388 -5.7304 -0.8887 47 1 2.3467 -6.6136 -1.2909 48 1 2.1469 -4.0021 -2.3474 49 1 3.5451 -4.4146 -6.6182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268101975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:00 Heat of formation + Delta-G solvation = 16.688031 kcal Electronic energy + Delta-G solvation = -28858.120162 eV Core-core repulsion = 25140.519989 eV Total energy + Delta-G solvation = -3717.600173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.46362 -39.58129 -37.11777 -36.42359 -34.24657 -32.27813 -31.23863 -30.56659 -28.12694 -27.72493 -27.52453 -27.03496 -25.94031 -25.01195 -22.79354 -21.83651 -20.21943 -19.89913 -18.54788 -17.96432 -17.58873 -16.51369 -16.18955 -15.73699 -15.25778 -14.89003 -14.63788 -14.25814 -14.17689 -13.98119 -13.83766 -13.58052 -13.09937 -12.96150 -12.88839 -12.72745 -12.66758 -12.49403 -12.45659 -12.32558 -12.11639 -12.07483 -11.95350 -11.83086 -11.65205 -11.30681 -11.26457 -11.16569 -10.97015 -10.85138 -10.60127 -10.12823 -9.80102 -9.60418 -9.47461 -9.34267 -8.91495 -8.83840 -8.38250 -7.24033 -5.78221 -3.12996 0.29056 1.22208 1.64563 2.48205 3.02029 3.27705 3.37616 3.45725 3.49232 3.78017 4.45645 4.57576 4.59964 4.60444 4.70709 4.97341 5.03908 5.04617 5.15603 5.20262 5.26205 5.34410 5.41037 5.46320 5.46771 5.52940 5.57342 5.60989 5.62672 5.70009 5.71050 5.76320 5.78308 5.87476 5.88666 5.90817 5.98071 6.01226 6.05505 6.18044 6.30172 6.41375 6.57093 6.76842 7.39800 7.68827 7.97438 8.21573 8.41103 9.20379 9.93581 10.13350 11.39994 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010594 B = 0.004672 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.351825 B = 5992.076927 C = 6943.401356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.148 3.852 3 N -0.479 5.479 4 C 0.042 3.958 5 C 0.008 3.992 6 C -0.132 4.132 7 C -0.157 4.157 8 C -0.136 4.136 9 S 0.198 5.802 10 C -0.307 4.307 11 C 0.597 3.403 12 O -0.526 6.526 13 N -0.594 5.594 14 C 0.064 3.936 15 C 0.124 3.876 16 H 0.104 0.896 17 C -0.155 4.155 18 C 0.148 3.852 19 N -0.753 5.753 20 C -0.243 4.243 21 H 0.091 0.909 22 C 0.010 3.990 23 N -0.932 5.932 24 Si 0.871 3.129 25 H -0.285 1.285 26 H -0.289 1.289 27 H -0.274 1.274 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.030 0.970 47 H 0.040 0.960 48 H 0.362 0.638 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 12.724 18.732 22.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.010 3.990 3 N -0.193 5.193 4 C -0.232 4.232 5 C 0.005 3.995 6 C -0.191 4.191 7 C -0.215 4.215 8 C -0.194 4.194 9 S 0.460 5.540 10 C -0.431 4.431 11 C 0.384 3.616 12 O -0.405 6.405 13 N -0.326 5.326 14 C -0.081 4.081 15 C 0.022 3.978 16 H 0.122 0.878 17 C -0.214 4.214 18 C 0.020 3.980 19 N -0.398 5.398 20 C -0.373 4.373 21 H 0.109 0.891 22 C -0.186 4.186 23 N -0.580 5.580 24 Si 0.701 3.299 25 H -0.211 1.211 26 H -0.215 1.215 27 H -0.200 1.200 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.048 0.952 47 H 0.057 0.943 48 H 0.195 0.805 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.944 12.436 18.500 22.638 hybrid contribution -1.389 1.198 -0.288 1.857 sum 2.556 13.635 18.212 22.893 Atomic orbital electron populations 1.20676 0.86299 1.04721 1.03306 1.20588 0.98464 0.85125 0.94851 1.66011 1.04584 1.31433 1.17254 1.27833 0.94609 1.00501 1.00277 1.19271 0.91351 0.90818 0.98099 1.21825 1.02892 0.98987 0.95396 1.22056 0.94429 1.02036 1.02940 1.21850 1.02880 0.99066 0.95632 1.84329 1.05077 0.99013 1.65614 1.25496 0.96658 0.99095 1.21816 1.16714 0.85848 0.82492 0.76539 1.90749 1.14487 1.84549 1.50703 1.47556 1.08696 1.06183 1.70172 1.21956 0.82121 1.01944 1.02096 1.21537 1.01062 0.79571 0.95679 0.87814 1.22061 1.02073 1.00595 0.96634 1.21008 0.97401 0.94175 0.85410 1.42662 1.65472 1.25491 1.06211 1.19033 1.26569 1.06201 0.85481 0.89101 1.24588 1.00219 0.98238 0.95516 1.69690 1.49127 1.39509 0.99715 0.86736 0.80753 0.85252 0.77193 1.21145 1.21476 1.19959 0.90464 0.90919 0.87924 0.92555 0.91606 0.91456 0.91488 0.90528 0.91771 0.91421 0.91535 0.92292 0.90812 0.88943 0.91369 0.92410 0.90951 0.92175 0.95211 0.94275 0.80510 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.78 36.00 0.35 -0.99 16 2 C 0.15 2.40 6.79 -83.89 -0.57 1.83 16 3 N -0.48 -7.23 10.48 -7.71 -0.08 -7.31 16 4 C 0.04 0.55 5.78 -13.29 -0.08 0.48 16 5 C 0.01 0.08 0.99 -155.66 -0.15 -0.07 16 6 C -0.13 -1.11 8.45 37.16 0.31 -0.80 16 7 C -0.16 -1.26 7.53 37.16 0.28 -0.98 16 8 C -0.14 -1.33 8.45 37.16 0.31 -1.01 16 9 S 0.20 2.63 16.48 -107.50 -1.77 0.86 16 10 C -0.31 -5.09 6.21 -37.10 -0.23 -5.32 16 11 C 0.60 10.81 7.32 -12.85 -0.09 10.72 16 12 O -0.53 -10.68 13.60 5.20 0.07 -10.61 16 13 N -0.59 -9.57 2.24 -175.47 -0.39 -9.96 16 14 C 0.06 0.82 7.98 59.85 0.48 1.30 16 15 C 0.12 1.99 2.79 -67.93 -0.19 1.80 16 16 H 0.10 1.87 6.91 -51.93 -0.36 1.51 16 17 C -0.16 -1.81 9.18 37.16 0.34 -1.47 16 18 C 0.15 2.81 5.56 -4.04 -0.02 2.79 16 19 N -0.75 -18.41 5.24 -59.91 -0.31 -18.72 16 20 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 21 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 22 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 23 N -0.93 -29.68 13.97 55.49 0.78 -28.91 16 24 Si 0.87 23.50 27.74 -169.99 -4.71 18.78 16 25 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 26 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 27 H -0.27 -7.38 6.52 56.52 0.37 -7.01 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.10 1.71 5.87 -51.93 -0.31 1.41 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.59 7.92 -51.93 -0.41 0.18 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.47 7.91 -51.93 -0.41 0.06 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.07 7.54 -51.93 -0.39 0.68 16 41 H 0.09 0.97 6.44 -51.93 -0.33 0.64 16 42 H 0.07 0.77 5.13 -28.23 -0.14 0.62 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.61 6.67 -51.93 -0.35 0.27 16 46 H 0.03 0.54 7.84 -51.92 -0.41 0.14 16 47 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.36 9.18 4.93 -40.82 -0.20 8.97 16 49 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 394.50 15.07 5.95 5.95 Total: -1.00 -34.95 394.50 -7.97 -42.92 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.98 Total: 5.64 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 0.49 Total: 1.37 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -0.01 Total: -64.90 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.07 Total: -10.61 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -4.71 Total: 18.78 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.77 Total: 0.86 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.95 -7.97 -42.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268101975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.606 kcal (2) G-P(sol) polarization free energy of solvation -34.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds