Wall clock time and date at job start Tue Mar 31 2020 22:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30943 * 122.90117 * 2 1 4 4 C 1.29432 * 117.36414 * 180.02562 * 3 2 1 5 5 C 1.50696 * 124.80483 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46998 * 60.02859 * 5 4 3 7 7 C 1.53003 * 109.47448 * 180.02562 * 5 4 3 8 8 C 1.53004 * 109.47528 * 300.02888 * 5 4 3 9 9 S 1.70951 * 110.39066 * 359.72869 * 4 3 2 10 10 C 1.35663 * 122.90785 * 180.02562 * 2 1 3 11 11 C 1.46679 * 126.12650 * 359.95730 * 10 2 1 12 12 O 1.21690 * 120.00308 * 6.93041 * 11 10 2 13 13 N 1.34779 * 119.99704 * 186.93238 * 11 10 2 14 14 C 1.46508 * 120.00075 * 5.92705 * 13 11 10 15 15 C 1.46499 * 120.00031 * 185.93079 * 13 11 10 16 16 H 1.08995 * 109.47001 * 359.97438 * 15 13 11 17 17 C 1.53004 * 109.46861 * 240.00019 * 15 13 11 18 18 C 1.52997 * 109.47445 * 119.99790 * 15 13 11 19 19 N 1.46497 * 109.47220 * 305.00100 * 18 15 13 20 20 C 1.36938 * 120.00237 * 179.97438 * 19 18 15 21 21 H 1.07993 * 120.00114 * 359.97438 * 20 19 18 22 22 C 1.38808 * 119.99859 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00032 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00269 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46881 * 90.00464 * 24 22 20 26 26 H 1.48500 * 109.47442 * 210.00107 * 24 22 20 27 27 H 1.48493 * 109.47359 * 330.00575 * 24 22 20 28 28 H 1.08997 * 109.47037 * 269.95675 * 1 2 3 29 29 H 1.08997 * 109.47423 * 29.95750 * 1 2 3 30 30 H 1.09007 * 109.46871 * 149.96012 * 1 2 3 31 31 H 1.08993 * 109.47077 * 60.00102 * 6 5 4 32 32 H 1.09004 * 109.47270 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.47351 * 299.99576 * 6 5 4 34 34 H 1.08997 * 109.47003 * 59.99747 * 7 5 4 35 35 H 1.08992 * 109.47679 * 180.02562 * 7 5 4 36 36 H 1.08999 * 109.46506 * 300.00523 * 7 5 4 37 37 H 1.08998 * 109.46847 * 59.99533 * 8 5 4 38 38 H 1.09001 * 109.47076 * 180.02562 * 8 5 4 39 39 H 1.09005 * 109.46937 * 299.99875 * 8 5 4 40 40 H 1.08998 * 109.47117 * 275.94311 * 14 13 11 41 41 H 1.09002 * 109.46841 * 155.94071 * 14 13 11 42 42 H 1.08996 * 109.46535 * 35.93990 * 14 13 11 43 43 H 1.08994 * 109.47244 * 59.99973 * 17 15 13 44 44 H 1.09003 * 109.46679 * 179.97438 * 17 15 13 45 45 H 1.09001 * 109.47104 * 299.99195 * 17 15 13 46 46 H 1.09007 * 109.47154 * 64.99891 * 18 15 13 47 47 H 1.08996 * 109.47131 * 184.99919 * 18 15 13 48 48 H 0.97007 * 119.99790 * 359.97438 * 19 18 15 49 49 H 0.97007 * 120.00478 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2182 1.0994 0.0000 4 6 3.5065 0.9745 -0.0005 5 6 4.4820 2.1231 -0.0012 6 6 4.2634 2.9786 1.2484 7 6 5.9117 1.5781 -0.0023 8 6 4.2615 2.9790 -1.2501 9 16 3.9447 -0.6778 0.0065 10 6 2.2440 -1.1389 -0.0005 11 6 1.7192 -2.5086 -0.0002 12 8 0.5245 -2.7025 -0.1267 13 7 2.5602 -3.5525 0.1401 14 6 3.9786 -3.3177 0.4220 15 6 2.0560 -4.9219 0.0106 16 1 0.9863 -4.8971 -0.1970 17 6 2.3044 -5.6822 1.3149 18 6 2.7825 -5.6265 -1.1368 19 7 2.6442 -4.8349 -2.3617 20 6 3.2168 -5.2706 -3.5268 21 1 3.7707 -6.1975 -3.5427 22 6 3.0861 -4.5202 -4.6873 23 7 3.6361 -4.9391 -5.8073 24 14 2.1286 -2.9165 -4.6598 25 1 3.0481 -1.7965 -4.3352 26 1 1.5153 -2.6832 -5.9919 27 1 1.0613 -2.9948 -3.6303 28 1 -0.3633 -0.0008 1.0276 29 1 -0.3634 0.8903 -0.5131 30 1 -0.3633 -0.8897 -0.5145 31 1 4.4206 2.3689 2.1381 32 1 4.9687 3.8097 1.2477 33 1 3.2450 3.3670 1.2492 34 1 6.0675 0.9686 -0.8924 35 1 6.6173 2.4088 -0.0023 36 1 6.0687 0.9684 0.8875 37 1 3.2430 3.3672 -1.2493 38 1 4.9675 3.8095 -1.2507 39 1 4.4173 2.3695 -2.1403 40 1 4.5087 -3.1317 -0.5120 41 1 4.4017 -4.1948 0.9116 42 1 4.0804 -2.4518 1.0762 43 1 1.7868 -5.1802 2.1323 44 1 1.9289 -6.7009 1.2187 45 1 3.3741 -5.7070 1.5229 46 1 3.8388 -5.7304 -0.8887 47 1 2.3467 -6.6136 -1.2909 48 1 2.1469 -4.0021 -2.3474 49 1 3.5451 -4.4146 -6.6182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268101975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:59 Heat of formation + Delta-G solvation = -5.996118 kcal Electronic energy + Delta-G solvation = -28859.103821 eV Core-core repulsion = 25140.519989 eV Total energy + Delta-G solvation = -3718.583831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65672 -40.76319 -38.19174 -37.61654 -36.06432 -33.92233 -32.67057 -32.08935 -29.29862 -28.38731 -28.22435 -28.13598 -27.61792 -26.02690 -24.32831 -23.53179 -21.31411 -21.06067 -19.84363 -19.55647 -19.05824 -17.70941 -17.35750 -16.98486 -16.72040 -16.27198 -16.04864 -15.72490 -15.12756 -15.02316 -14.99850 -14.84484 -14.57617 -14.37333 -14.21471 -14.05966 -13.86849 -13.76356 -13.58820 -13.24404 -13.16145 -13.11191 -12.99475 -12.92901 -12.65250 -12.56143 -12.48557 -12.33699 -12.31663 -12.00615 -11.96019 -11.92097 -11.81375 -11.15570 -11.03191 -10.57642 -10.45665 -10.04529 -9.55842 -9.35602 -8.11432 -5.41196 -0.84595 0.12995 0.54804 1.19738 1.25533 1.30177 1.30887 1.80003 2.01251 2.34828 2.82620 3.21122 3.37327 3.60419 3.61516 3.88456 3.89608 3.91801 3.99925 4.00623 4.20534 4.23855 4.30267 4.45064 4.58438 4.62040 4.64940 4.67504 4.70608 4.76221 4.78069 4.80404 4.84844 4.91543 4.91971 4.93183 4.99709 5.07489 5.17127 5.23870 5.28473 5.30967 5.36917 5.48116 5.70303 6.13885 6.14911 6.57061 6.91232 6.99688 7.77509 7.94302 9.10268 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010594 B = 0.004672 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.351825 B = 5992.076927 C = 6943.401356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.139 3.861 3 N -0.496 5.496 4 C 0.045 3.955 5 C 0.004 3.996 6 C -0.128 4.128 7 C -0.157 4.157 8 C -0.134 4.134 9 S 0.237 5.763 10 C -0.345 4.345 11 C 0.587 3.413 12 O -0.561 6.561 13 N -0.595 5.595 14 C 0.058 3.942 15 C 0.129 3.871 16 H 0.079 0.921 17 C -0.144 4.144 18 C 0.143 3.857 19 N -0.759 5.759 20 C -0.222 4.222 21 H 0.072 0.928 22 C -0.046 4.046 23 N -0.974 5.974 24 Si 0.926 3.074 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.279 1.279 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.043 0.957 40 H 0.058 0.942 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.044 0.956 48 H 0.357 0.643 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.362 13.907 21.027 25.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.000 4.000 3 N -0.211 5.211 4 C -0.229 4.229 5 C 0.000 4.000 6 C -0.186 4.186 7 C -0.215 4.215 8 C -0.193 4.193 9 S 0.499 5.501 10 C -0.469 4.469 11 C 0.375 3.625 12 O -0.443 6.443 13 N -0.326 5.326 14 C -0.086 4.086 15 C 0.026 3.974 16 H 0.097 0.903 17 C -0.202 4.202 18 C 0.017 3.983 19 N -0.404 5.404 20 C -0.353 4.353 21 H 0.090 0.910 22 C -0.238 4.238 23 N -0.625 5.625 24 Si 0.756 3.244 25 H -0.206 1.206 26 H -0.216 1.216 27 H -0.205 1.205 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.141 0.859 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.189 0.811 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.675 13.598 20.850 25.531 hybrid contribution -1.853 0.806 -0.948 2.232 sum 3.821 14.405 19.902 24.863 Atomic orbital electron populations 1.20616 0.86066 1.03941 1.03989 1.20852 0.99133 0.85566 0.94499 1.66082 1.05447 1.30989 1.18574 1.28614 0.94677 1.01707 0.97926 1.19548 0.91562 0.89986 0.98878 1.21808 1.02792 0.99501 0.94524 1.22102 0.93465 1.03020 1.02904 1.21861 1.02883 0.99670 0.94903 1.84029 1.02436 0.98627 1.64994 1.25533 0.98955 0.98516 1.23868 1.17043 0.85741 0.83470 0.76208 1.90719 1.15934 1.85242 1.52392 1.47687 1.09768 1.05756 1.69382 1.22177 0.80192 1.04235 1.01954 1.21462 0.99169 0.79989 0.96793 0.90320 1.21994 1.03714 1.00547 0.93916 1.21273 0.98824 0.93911 0.84302 1.42772 1.64914 1.25852 1.06837 1.19089 1.24633 1.04797 0.86750 0.90973 1.25130 1.02010 1.01084 0.95571 1.69805 1.51386 1.40970 1.00350 0.85847 0.79476 0.82439 0.76641 1.20583 1.21636 1.20506 0.89071 0.89943 0.90226 0.92219 0.88987 0.92913 0.92441 0.87980 0.90865 0.92840 0.88693 0.93784 0.92355 0.85927 0.89636 0.91735 0.89565 0.90013 0.93403 0.93858 0.81061 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.62 9.78 71.23 0.70 -1.92 16 2 C 0.14 4.51 6.79 42.09 0.29 4.79 16 3 N -0.50 -14.71 10.48 -178.29 -1.87 -16.58 16 4 C 0.04 1.11 5.78 88.46 0.51 1.62 16 5 C 0.00 0.07 0.99 -52.93 -0.05 0.02 16 6 C -0.13 -1.79 8.45 71.98 0.61 -1.18 16 7 C -0.16 -2.03 7.53 71.98 0.54 -1.48 16 8 C -0.13 -2.37 8.45 71.98 0.61 -1.77 16 9 S 0.24 5.93 16.48 -56.49 -0.93 5.00 16 10 C -0.35 -11.37 6.21 23.88 0.15 -11.23 16 11 C 0.59 21.32 7.32 86.45 0.63 21.96 16 12 O -0.56 -23.44 13.60 -4.32 -0.06 -23.50 16 13 N -0.59 -18.49 2.24 -827.29 -1.86 -20.35 16 14 C 0.06 1.37 7.98 127.77 1.02 2.39 16 15 C 0.13 3.95 2.79 44.99 0.13 4.08 16 16 H 0.08 2.84 6.91 -2.39 -0.02 2.82 16 17 C -0.14 -2.92 9.18 71.98 0.66 -2.26 16 18 C 0.14 5.24 5.56 86.38 0.48 5.72 16 19 N -0.76 -36.81 5.24 -343.47 -1.80 -38.61 16 20 C -0.22 -12.74 10.47 84.03 0.88 -11.86 16 21 H 0.07 4.39 8.06 -2.91 -0.02 4.36 16 22 C -0.05 -2.76 5.50 84.86 0.47 -2.30 16 23 N -0.97 -62.90 13.97 21.65 0.30 -62.60 16 24 Si 0.93 49.52 27.74 68.60 1.90 51.42 16 25 H -0.28 -14.53 7.11 99.48 0.71 -13.82 16 26 H -0.29 -15.45 7.11 99.48 0.71 -14.74 16 27 H -0.28 -14.99 6.52 99.48 0.65 -14.34 16 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.08 2.78 5.87 -2.38 -0.01 2.77 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.87 7.92 -2.39 -0.02 0.85 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.82 7.91 -2.39 -0.02 0.80 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.06 1.59 7.54 -2.39 -0.02 1.57 16 41 H 0.12 2.11 6.44 -2.39 -0.02 2.10 16 42 H 0.09 1.72 5.13 -17.46 -0.09 1.63 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.08 1.32 6.67 -2.39 -0.02 1.31 16 46 H 0.05 1.62 7.84 -2.38 -0.02 1.60 16 47 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.36 18.09 4.93 -92.70 -0.46 17.63 16 49 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 Total: -1.00 -77.31 394.50 3.66 -73.66 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.35 Total: 24.97 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 7.61 Total: 6.58 kcal Atomic # 7 Polarization: -132.91 SS G_CDS: -5.22 Total: -138.13 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.06 Total: -23.50 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 1.90 Total: 51.42 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -0.93 Total: 5.00 kcal Total: -77.31 3.66 -73.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268101975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.662 kcal (2) G-P(sol) polarization free energy of solvation -77.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds