Wall clock time and date at job start Tue Mar 31 2020 22:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33634 * 122.74956 * 2 1 4 4 S 1.76193 * 107.92724 * 180.02562 * 3 2 1 5 5 C 1.70979 * 90.28351 * 0.02562 * 4 3 2 6 6 C 1.50696 * 124.91925 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47365 * 270.03171 * 6 5 4 8 8 C 1.50700 * 109.47089 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99994 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00373 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00660 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.46581 * 35.00175 * 11 10 8 13 13 C 1.52997 * 109.47224 * 154.99612 * 11 10 8 14 14 N 1.46497 * 109.47401 * 305.00548 * 13 11 10 15 15 C 1.36938 * 120.00199 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99998 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00221 * 179.97438 * 15 14 13 18 18 N 1.31616 * 120.00037 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00035 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47146 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47170 * 119.99775 * 19 17 15 22 22 H 1.48498 * 109.46780 * 239.99885 * 19 17 15 23 23 C 1.52997 * 109.47195 * 275.00187 * 11 10 8 24 24 C 1.53000 * 109.47060 * 64.99866 * 23 11 10 25 25 C 1.52993 * 109.47345 * 65.00157 * 24 23 11 26 26 C 1.53006 * 109.46846 * 185.00166 * 24 23 11 27 27 N 1.29027 * 110.16490 * 0.25085 * 5 4 3 28 28 H 1.09000 * 109.47735 * 89.97108 * 1 2 3 29 29 H 1.09008 * 109.46909 * 209.96877 * 1 2 3 30 30 H 1.09000 * 109.47262 * 329.96601 * 1 2 3 31 31 H 1.08003 * 126.04156 * 0.04673 * 3 2 1 32 32 H 1.09000 * 109.47275 * 150.03058 * 6 5 4 33 33 H 1.09005 * 109.46742 * 30.03241 * 6 5 4 34 34 H 1.09000 * 109.47368 * 60.00143 * 7 6 5 35 35 H 1.09005 * 109.47248 * 299.99760 * 7 6 5 36 36 H 0.97010 * 119.99536 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.46769 * 65.00401 * 13 11 10 38 38 H 1.09001 * 109.47207 * 184.99974 * 13 11 10 39 39 H 0.97000 * 120.00370 * 359.97438 * 14 13 11 40 40 H 0.96998 * 120.00455 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47153 * 304.99547 * 23 11 10 42 42 H 1.09001 * 109.46832 * 184.99738 * 23 11 10 43 43 H 1.09002 * 109.47069 * 304.99600 * 24 23 11 44 44 H 1.08993 * 109.47639 * 59.99724 * 25 24 23 45 45 H 1.09004 * 109.47135 * 179.97438 * 25 24 23 46 46 H 1.09002 * 109.47179 * 299.99584 * 25 24 23 47 47 H 1.09001 * 109.47241 * 59.99481 * 26 24 23 48 48 H 1.08996 * 109.46751 * 179.97438 * 26 24 23 49 49 H 1.09002 * 109.46824 * 299.99583 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9332 0.6732 -0.0007 5 6 3.5039 -0.9819 -0.0018 6 6 4.4835 -2.1270 -0.0033 7 6 4.8146 -2.5130 -1.4463 8 6 5.7937 -3.6586 -1.4478 9 8 6.1881 -4.1206 -0.3981 10 7 6.2318 -4.1692 -2.6157 11 6 7.1840 -5.2825 -2.6172 12 1 6.9721 -5.9429 -1.7763 13 6 7.0522 -6.0646 -3.9256 14 7 5.6605 -6.4859 -4.1047 15 6 5.2999 -7.2047 -5.2130 16 1 6.0416 -7.4614 -5.9550 17 6 3.9815 -7.6043 -5.3824 18 7 3.0777 -7.2919 -4.4780 19 14 3.4898 -8.5855 -6.8941 20 1 4.6822 -8.8041 -7.7517 21 1 2.9345 -9.8971 -6.4738 22 1 2.4616 -7.8347 -7.6586 23 6 8.6075 -4.7363 -2.4907 24 6 8.7756 -4.0617 -1.1277 25 6 8.6442 -5.1093 -0.0205 26 6 10.1565 -3.4073 -1.0495 27 7 2.2199 -1.1084 -0.0068 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3634 0.8897 0.5144 31 1 1.8391 2.1308 0.0007 32 1 4.0435 -2.9822 0.5096 33 1 5.3961 -1.8252 0.5106 34 1 5.2547 -1.6579 -1.9594 35 1 3.9020 -2.8149 -1.9603 36 1 5.9165 -3.7995 -3.4553 37 1 7.3497 -5.4295 -4.7600 38 1 7.6961 -6.9433 -3.8901 39 1 4.9944 -6.2556 -3.4381 40 1 2.1564 -7.5714 -4.5962 41 1 8.7889 -4.0082 -3.2813 42 1 9.3205 -5.5559 -2.5809 43 1 8.0054 -3.3009 -1.0014 44 1 9.4144 -5.8701 -0.1468 45 1 8.7645 -4.6288 0.9505 46 1 7.6605 -5.5755 -0.0762 47 1 10.2501 -2.6610 -1.8384 48 1 10.2761 -2.9264 -0.0787 49 1 10.9268 -4.1682 -1.1758 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268107886.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:48 Heat of formation + Delta-G solvation = -5.787789 kcal Electronic energy + Delta-G solvation = -27425.404688 eV Core-core repulsion = 23706.829891 eV Total energy + Delta-G solvation = -3718.574797 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.15569 -39.76909 -36.86505 -34.94441 -34.17397 -33.40817 -31.45724 -30.87993 -29.14935 -27.81063 -26.88338 -26.10488 -25.50461 -22.95363 -22.32353 -20.77569 -19.99351 -19.84027 -19.64144 -17.84156 -17.28716 -16.76011 -15.90187 -15.77641 -15.27988 -15.00970 -14.88703 -14.50892 -13.93884 -13.86345 -13.62416 -13.49455 -13.26978 -13.00277 -12.92725 -12.83078 -12.63344 -12.59268 -12.08157 -12.02704 -11.98737 -11.81417 -11.49823 -11.48343 -11.17756 -11.02328 -10.96472 -10.83196 -10.51219 -10.23599 -10.20421 -9.97212 -9.75456 -9.72351 -9.58019 -9.42060 -8.92881 -8.82995 -8.56561 -6.96317 -5.78550 -3.08371 0.53654 1.20677 1.58574 2.62386 2.96077 3.41593 3.47323 3.49447 3.49923 3.96599 4.55681 4.70157 4.90328 4.95607 4.97163 5.02806 5.06473 5.17636 5.19763 5.27772 5.40264 5.46549 5.48524 5.53316 5.62023 5.66537 5.70807 5.72871 5.87797 5.89998 5.97411 5.99053 6.05152 6.10564 6.11505 6.13171 6.22556 6.30906 6.46067 6.50410 6.67753 6.68009 6.86148 6.99751 7.63673 7.68029 7.90976 8.39220 8.58904 9.51238 10.07293 10.42657 11.43682 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007580 B = 0.003354 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3692.872630 B = 8346.853538 C =11497.789818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.070 3.930 3 C -0.271 4.271 4 S 0.110 5.890 5 C 0.065 3.935 6 C -0.027 4.027 7 C -0.136 4.136 8 C 0.516 3.484 9 O -0.538 6.538 10 N -0.708 5.708 11 C 0.136 3.864 12 H 0.091 0.909 13 C 0.144 3.856 14 N -0.731 5.731 15 C -0.243 4.243 16 H 0.070 0.930 17 C -0.011 4.011 18 N -0.929 5.929 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.292 1.292 23 C -0.122 4.122 24 C -0.092 4.092 25 C -0.138 4.138 26 C -0.146 4.146 27 N -0.468 5.468 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.175 0.825 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.403 0.597 37 H 0.023 0.977 38 H 0.032 0.968 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.037 0.963 45 H 0.042 0.958 46 H 0.077 0.923 47 H 0.047 0.953 48 H 0.048 0.952 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.755 18.534 9.772 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 C -0.409 4.409 4 S 0.365 5.635 5 C -0.214 4.214 6 C -0.068 4.068 7 C -0.178 4.178 8 C 0.302 3.698 9 O -0.416 6.416 10 N -0.359 5.359 11 C 0.031 3.969 12 H 0.109 0.891 13 C 0.016 3.984 14 N -0.376 5.376 15 C -0.374 4.374 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.161 4.161 24 C -0.110 4.110 25 C -0.195 4.195 26 C -0.204 4.204 27 N -0.183 5.183 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.192 0.808 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.238 0.762 37 H 0.041 0.959 38 H 0.050 0.950 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.785 18.131 10.356 21.666 hybrid contribution -1.676 -0.210 -1.182 2.062 sum 4.108 17.920 9.174 20.547 Atomic orbital electron populations 1.20377 0.87121 1.03312 1.03140 1.20369 0.98373 0.86504 1.00914 1.26767 0.95108 1.03859 1.15202 1.83976 1.07512 1.03566 1.68446 1.27140 0.94030 0.98111 1.02070 1.20003 0.95594 0.93972 0.97218 1.21634 1.00628 0.97952 0.97596 1.20287 0.81234 0.84006 0.84224 1.90684 1.58075 1.61553 1.31319 1.45965 1.45875 1.35548 1.08504 1.21359 0.87502 0.87663 1.00330 0.89121 1.20963 0.89076 0.95585 0.92817 1.42350 1.03620 1.65641 1.25974 1.19250 0.93152 1.26396 0.98587 0.91154 1.24743 0.96064 1.01454 0.98496 1.69671 1.01987 1.50988 1.35129 0.86137 0.78133 0.79625 0.82394 1.20575 1.21852 1.21891 1.22018 0.96488 1.00392 0.97202 1.21134 0.96646 0.98418 0.94820 1.21829 1.02420 0.98045 0.97205 1.21876 0.97538 1.00132 1.00838 1.66167 1.04557 1.31466 1.16080 0.90471 0.90407 0.90854 0.80806 0.87668 0.88864 0.89144 0.87880 0.76198 0.95937 0.95041 0.77970 0.93520 0.92056 0.91252 0.90671 0.94399 0.93893 0.90436 0.93378 0.93274 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.31 36.00 0.37 -0.32 16 2 C 0.07 0.80 6.74 -84.23 -0.57 0.23 16 3 C -0.27 -2.58 11.13 29.12 0.32 -2.25 16 4 S 0.11 1.05 23.18 -107.50 -2.49 -1.44 16 5 C 0.06 0.78 6.64 -13.46 -0.09 0.69 16 6 C -0.03 -0.31 5.09 -27.89 -0.14 -0.46 16 7 C -0.14 -1.64 5.68 -27.88 -0.16 -1.80 16 8 C 0.52 7.50 6.39 -10.99 -0.07 7.43 16 9 O -0.54 -8.82 10.94 5.56 0.06 -8.76 16 10 N -0.71 -10.54 4.47 -53.81 -0.24 -10.78 16 11 C 0.14 2.17 2.33 -67.93 -0.16 2.01 16 12 H 0.09 1.65 5.92 -51.93 -0.31 1.34 16 13 C 0.14 2.74 5.82 -4.04 -0.02 2.71 16 14 N -0.73 -17.83 5.43 -59.91 -0.33 -18.16 16 15 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 19 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 C -0.12 -1.62 4.36 -26.73 -0.12 -1.73 16 24 C -0.09 -1.19 2.38 -90.62 -0.22 -1.40 16 25 C -0.14 -1.91 8.04 37.15 0.30 -1.62 16 26 C -0.15 -1.61 9.19 37.16 0.34 -1.27 16 27 N -0.47 -6.40 10.53 -8.06 -0.08 -6.48 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 31 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.11 1.41 8.10 -51.93 -0.42 0.99 16 33 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.40 5.82 8.60 -40.82 -0.35 5.47 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.39 10.06 7.33 -40.82 -0.30 9.76 16 40 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.08 1.06 5.19 -51.93 -0.27 0.79 16 44 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.08 1.25 4.76 -51.93 -0.25 1.01 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 404.24 15.07 6.09 6.09 Total: -1.00 -31.74 404.24 -9.94 -41.68 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -8.20 Total: 12.77 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.45 Total: -4.98 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: 0.07 Total: -62.55 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.06 Total: -8.76 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.49 Total: -1.44 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.74 -9.94 -41.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268107886.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.896 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds