Wall clock time and date at job start Tue Mar 31 2020 22:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33634 * 122.74956 * 2 1 4 4 S 1.76193 * 107.92724 * 180.02562 * 3 2 1 5 5 C 1.70979 * 90.28351 * 0.02562 * 4 3 2 6 6 C 1.50696 * 124.91925 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47365 * 270.03171 * 6 5 4 8 8 C 1.50700 * 109.47089 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99994 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00373 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00660 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.46581 * 35.00175 * 11 10 8 13 13 C 1.52997 * 109.47224 * 154.99612 * 11 10 8 14 14 N 1.46497 * 109.47401 * 305.00548 * 13 11 10 15 15 C 1.36938 * 120.00199 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99998 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00221 * 179.97438 * 15 14 13 18 18 N 1.31616 * 120.00037 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00035 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47146 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47170 * 119.99775 * 19 17 15 22 22 H 1.48498 * 109.46780 * 239.99885 * 19 17 15 23 23 C 1.52997 * 109.47195 * 275.00187 * 11 10 8 24 24 C 1.53000 * 109.47060 * 64.99866 * 23 11 10 25 25 C 1.52993 * 109.47345 * 65.00157 * 24 23 11 26 26 C 1.53006 * 109.46846 * 185.00166 * 24 23 11 27 27 N 1.29027 * 110.16490 * 0.25085 * 5 4 3 28 28 H 1.09000 * 109.47735 * 89.97108 * 1 2 3 29 29 H 1.09008 * 109.46909 * 209.96877 * 1 2 3 30 30 H 1.09000 * 109.47262 * 329.96601 * 1 2 3 31 31 H 1.08003 * 126.04156 * 0.04673 * 3 2 1 32 32 H 1.09000 * 109.47275 * 150.03058 * 6 5 4 33 33 H 1.09005 * 109.46742 * 30.03241 * 6 5 4 34 34 H 1.09000 * 109.47368 * 60.00143 * 7 6 5 35 35 H 1.09005 * 109.47248 * 299.99760 * 7 6 5 36 36 H 0.97010 * 119.99536 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.46769 * 65.00401 * 13 11 10 38 38 H 1.09001 * 109.47207 * 184.99974 * 13 11 10 39 39 H 0.97000 * 120.00370 * 359.97438 * 14 13 11 40 40 H 0.96998 * 120.00455 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47153 * 304.99547 * 23 11 10 42 42 H 1.09001 * 109.46832 * 184.99738 * 23 11 10 43 43 H 1.09002 * 109.47069 * 304.99600 * 24 23 11 44 44 H 1.08993 * 109.47639 * 59.99724 * 25 24 23 45 45 H 1.09004 * 109.47135 * 179.97438 * 25 24 23 46 46 H 1.09002 * 109.47179 * 299.99584 * 25 24 23 47 47 H 1.09001 * 109.47241 * 59.99481 * 26 24 23 48 48 H 1.08996 * 109.46751 * 179.97438 * 26 24 23 49 49 H 1.09002 * 109.46824 * 299.99583 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9332 0.6732 -0.0007 5 6 3.5039 -0.9819 -0.0018 6 6 4.4835 -2.1270 -0.0033 7 6 4.8146 -2.5130 -1.4463 8 6 5.7937 -3.6586 -1.4478 9 8 6.1881 -4.1206 -0.3981 10 7 6.2318 -4.1692 -2.6157 11 6 7.1840 -5.2825 -2.6172 12 1 6.9721 -5.9429 -1.7763 13 6 7.0522 -6.0646 -3.9256 14 7 5.6605 -6.4859 -4.1047 15 6 5.2999 -7.2047 -5.2130 16 1 6.0416 -7.4614 -5.9550 17 6 3.9815 -7.6043 -5.3824 18 7 3.0777 -7.2919 -4.4780 19 14 3.4898 -8.5855 -6.8941 20 1 4.6822 -8.8041 -7.7517 21 1 2.9345 -9.8971 -6.4738 22 1 2.4616 -7.8347 -7.6586 23 6 8.6075 -4.7363 -2.4907 24 6 8.7756 -4.0617 -1.1277 25 6 8.6442 -5.1093 -0.0205 26 6 10.1565 -3.4073 -1.0495 27 7 2.2199 -1.1084 -0.0068 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3634 0.8897 0.5144 31 1 1.8391 2.1308 0.0007 32 1 4.0435 -2.9822 0.5096 33 1 5.3961 -1.8252 0.5106 34 1 5.2547 -1.6579 -1.9594 35 1 3.9020 -2.8149 -1.9603 36 1 5.9165 -3.7995 -3.4553 37 1 7.3497 -5.4295 -4.7600 38 1 7.6961 -6.9433 -3.8901 39 1 4.9944 -6.2556 -3.4381 40 1 2.1564 -7.5714 -4.5962 41 1 8.7889 -4.0082 -3.2813 42 1 9.3205 -5.5559 -2.5809 43 1 8.0054 -3.3009 -1.0014 44 1 9.4144 -5.8701 -0.1468 45 1 8.7645 -4.6288 0.9505 46 1 7.6605 -5.5755 -0.0762 47 1 10.2501 -2.6610 -1.8384 48 1 10.2761 -2.9264 -0.0787 49 1 10.9268 -4.1682 -1.1758 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268107886.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:47 Heat of formation + Delta-G solvation = -25.584163 kcal Electronic energy + Delta-G solvation = -27426.263123 eV Core-core repulsion = 23706.829891 eV Total energy + Delta-G solvation = -3719.433233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.21821 -40.75803 -38.11964 -36.43389 -35.11657 -34.96296 -33.02269 -32.00967 -30.55612 -28.54109 -27.90926 -27.17477 -27.04511 -24.64764 -23.37849 -22.09957 -21.18922 -20.72077 -20.66843 -19.23347 -18.68509 -17.94908 -17.13973 -17.01698 -16.53356 -16.16763 -15.89401 -15.76242 -15.33607 -15.20675 -14.77930 -14.64641 -14.47779 -14.36284 -14.04762 -13.88122 -13.64619 -13.40102 -13.32892 -13.13961 -12.97666 -12.94185 -12.83364 -12.80594 -12.49648 -12.30487 -12.22683 -12.13703 -12.04414 -11.88192 -11.57632 -11.34046 -11.18817 -10.98493 -10.67280 -10.56873 -10.36664 -9.80996 -9.61985 -9.00006 -7.94056 -5.23288 -0.27728 0.42221 0.78924 1.47730 1.48449 1.58296 1.76985 1.78702 2.34728 2.56232 3.12065 3.40575 3.66858 3.77324 3.98389 4.02848 4.09997 4.14086 4.21977 4.28437 4.29425 4.40068 4.43592 4.47765 4.54795 4.71243 4.75805 4.80828 4.83464 4.85295 4.92775 4.93651 4.97059 5.00645 5.03803 5.05803 5.14554 5.21595 5.29643 5.36015 5.43562 5.51768 5.62569 5.68982 5.74118 6.26764 6.70646 6.82881 7.34303 7.40241 8.08929 8.32230 9.28991 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007580 B = 0.003354 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3692.872630 B = 8346.853538 C =11497.789818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.040 3.960 3 C -0.261 4.261 4 S 0.158 5.842 5 C 0.038 3.962 6 C -0.019 4.019 7 C -0.125 4.125 8 C 0.514 3.486 9 O -0.558 6.558 10 N -0.708 5.708 11 C 0.147 3.853 12 H 0.065 0.935 13 C 0.144 3.856 14 N -0.742 5.742 15 C -0.242 4.242 16 H 0.078 0.922 17 C -0.073 4.073 18 N -0.968 5.968 19 Si 0.971 3.029 20 H -0.264 1.264 21 H -0.298 1.298 22 H -0.294 1.294 23 C -0.113 4.113 24 C -0.088 4.088 25 C -0.134 4.134 26 C -0.141 4.141 27 N -0.506 5.506 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.206 0.794 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.406 0.594 37 H 0.038 0.962 38 H 0.033 0.967 39 H 0.374 0.626 40 H 0.249 0.751 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.043 0.957 46 H 0.049 0.951 47 H 0.058 0.942 48 H 0.053 0.947 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.270 20.637 8.980 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C -0.400 4.400 4 S 0.413 5.587 5 C -0.239 4.239 6 C -0.060 4.060 7 C -0.167 4.167 8 C 0.301 3.699 9 O -0.437 6.437 10 N -0.359 5.359 11 C 0.042 3.958 12 H 0.083 0.917 13 C 0.017 3.983 14 N -0.385 5.385 15 C -0.374 4.374 16 H 0.096 0.904 17 C -0.266 4.266 18 N -0.619 5.619 19 Si 0.800 3.200 20 H -0.189 1.189 21 H -0.225 1.225 22 H -0.221 1.221 23 C -0.152 4.152 24 C -0.107 4.107 25 C -0.191 4.191 26 C -0.198 4.198 27 N -0.222 5.222 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.223 0.777 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.241 0.759 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.207 0.793 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.354 20.241 9.550 23.558 hybrid contribution -2.087 -0.815 -0.886 2.410 sum 5.267 19.426 8.664 21.913 Atomic orbital electron populations 1.20439 0.85790 1.04000 1.03509 1.20771 0.99553 0.86578 1.02180 1.27211 0.95068 1.04787 1.12917 1.83729 1.07122 1.00786 1.67084 1.27062 0.93794 0.99657 1.03428 1.19868 0.95958 0.93466 0.96750 1.21559 0.99239 0.97815 0.98064 1.20690 0.81189 0.84322 0.83711 1.90684 1.58832 1.62243 1.31963 1.45946 1.45919 1.35195 1.08839 1.21139 0.89576 0.87578 0.97494 0.91740 1.21122 0.86206 0.96094 0.94873 1.42530 1.05540 1.65496 1.24977 1.19659 0.93267 1.25345 0.99094 0.90406 1.25527 0.96325 1.03301 1.01409 1.69833 1.01960 1.52864 1.37196 0.85111 0.77965 0.77616 0.79283 1.18862 1.22502 1.22108 1.21952 0.94333 1.00919 0.97987 1.21075 0.97816 0.97804 0.93997 1.21763 1.01016 0.98484 0.97827 1.21813 0.95998 1.00421 1.01585 1.66163 1.05641 1.33441 1.16992 0.90229 0.91681 0.88209 0.77714 0.90250 0.87748 0.86349 0.89341 0.75856 0.94446 0.94943 0.79349 0.94199 0.90564 0.90478 0.91726 0.93563 0.93827 0.93223 0.92278 0.92808 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.31 71.23 0.73 -0.57 16 2 C 0.04 0.90 6.74 41.52 0.28 1.18 16 3 C -0.26 -4.41 11.13 66.77 0.74 -3.66 16 4 S 0.16 2.73 23.18 -56.49 -1.31 1.42 16 5 C 0.04 0.91 6.64 88.52 0.59 1.50 16 6 C -0.02 -0.46 5.09 29.85 0.15 -0.31 16 7 C -0.13 -3.04 5.68 29.85 0.17 -2.87 16 8 C 0.51 15.19 6.39 87.66 0.56 15.75 16 9 O -0.56 -18.87 10.94 -3.03 -0.03 -18.90 16 10 N -0.71 -21.12 4.47 -442.54 -1.98 -23.10 16 11 C 0.15 4.67 2.33 44.99 0.10 4.78 16 12 H 0.06 2.42 5.92 -2.39 -0.01 2.41 16 13 C 0.14 5.39 5.82 86.38 0.50 5.89 16 14 N -0.74 -36.50 5.43 -343.47 -1.87 -38.37 16 15 C -0.24 -13.19 9.99 84.03 0.84 -12.35 16 16 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 17 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 18 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 19 Si 0.97 45.90 29.55 68.60 2.03 47.92 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 C -0.11 -2.81 4.36 30.59 0.13 -2.68 16 24 C -0.09 -2.17 2.38 -10.79 -0.03 -2.20 16 25 C -0.13 -3.67 8.04 71.98 0.58 -3.09 16 26 C -0.14 -2.74 9.19 71.98 0.66 -2.08 16 27 N -0.51 -14.09 10.53 -179.41 -1.89 -15.98 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.10 1.06 8.12 -2.39 -0.02 1.04 16 31 H 0.21 2.01 8.06 -2.91 -0.02 1.98 16 32 H 0.08 2.30 8.10 -2.39 -0.02 2.28 16 33 H 0.10 2.22 8.10 -2.38 -0.02 2.20 16 34 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.41 11.62 8.60 -92.70 -0.80 10.82 16 37 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 38 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.37 20.04 7.33 -92.71 -0.68 19.36 16 40 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 1.74 5.19 -2.39 -0.01 1.73 16 44 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.04 1.15 8.14 -2.38 -0.02 1.14 16 46 H 0.05 1.65 4.76 -2.39 -0.01 1.64 16 47 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -69.41 404.24 1.20 -68.21 By element: Atomic # 1 Polarization: 42.77 SS G_CDS: -0.52 Total: 42.25 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 6.49 Total: -4.42 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -5.45 Total: -136.48 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.03 Total: -18.90 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.31 Total: 1.42 kcal Total: -69.41 1.20 -68.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268107886.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.630 kcal (2) G-P(sol) polarization free energy of solvation -69.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds