Wall clock time and date at job start Tue Mar 31 2020 22:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 C 1.53002 * 109.46838 * 269.99555 * 6 5 4 8 8 C 1.50703 * 109.47140 * 179.97438 * 7 6 5 9 9 O 1.21288 * 119.99760 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99928 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00040 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46922 * 325.00038 * 11 10 8 13 13 C 1.52995 * 109.47226 * 205.00540 * 11 10 8 14 14 N 1.46494 * 109.47432 * 54.99591 * 13 11 10 15 15 C 1.36942 * 119.99902 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00159 * 359.97438 * 15 14 13 17 17 C 1.38819 * 119.99713 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00163 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99843 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47063 * 59.99416 * 19 17 15 21 21 H 1.48499 * 109.47343 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47131 * 299.99924 * 19 17 15 23 23 C 1.52993 * 109.47132 * 84.99788 * 11 10 8 24 24 C 1.53003 * 109.47643 * 295.00265 * 23 11 10 25 25 C 1.52999 * 109.47298 * 175.00113 * 24 23 11 26 26 C 1.53003 * 109.46793 * 295.00324 * 24 23 11 27 27 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 28 28 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 31 31 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 32 32 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 33 33 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 34 34 H 1.09000 * 109.47428 * 300.00004 * 7 6 5 35 35 H 1.09004 * 109.47230 * 59.99848 * 7 6 5 36 36 H 0.96999 * 120.00210 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.46968 * 175.00198 * 13 11 10 38 38 H 1.09000 * 109.46854 * 294.99621 * 13 11 10 39 39 H 0.96999 * 120.00131 * 359.97438 * 14 13 11 40 40 H 0.96997 * 120.00101 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.47078 * 55.00634 * 23 11 10 42 42 H 1.09004 * 109.46906 * 175.00141 * 23 11 10 43 43 H 1.09000 * 109.46511 * 54.99661 * 24 23 11 44 44 H 1.08999 * 109.47069 * 59.99889 * 25 24 23 45 45 H 1.08994 * 109.46856 * 180.02562 * 25 24 23 46 46 H 1.08998 * 109.46820 * 300.00069 * 25 24 23 47 47 H 1.09005 * 109.46670 * 179.97438 * 26 24 23 48 48 H 1.09003 * 109.46736 * 299.99420 * 26 24 23 49 49 H 1.08998 * 109.47494 * 59.99672 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5074 -1.4589 8 6 5.7934 -3.6522 -1.4659 9 8 6.1886 -4.1184 -0.4183 10 7 6.2297 -4.1586 -2.6361 11 6 7.1819 -5.2719 -2.6429 12 1 7.8672 -5.1690 -1.8015 13 6 7.9749 -5.2568 -3.9512 14 7 8.6069 -3.9466 -4.1242 15 6 9.3729 -3.6967 -5.2314 16 1 9.5115 -4.4657 -5.9770 17 6 9.9722 -2.4552 -5.3950 18 7 9.8037 -1.5182 -4.4862 19 14 11.0165 -2.1141 -6.9058 20 1 10.1878 -2.2764 -8.1274 21 1 11.5387 -0.7254 -6.8433 22 1 12.1528 -3.0693 -6.9481 23 6 6.4216 -6.5941 -2.5225 24 6 5.7291 -6.6621 -1.1598 25 6 4.8687 -7.9251 -1.0874 26 6 6.7846 -6.6997 -0.0527 27 7 2.2199 -1.1083 -0.0064 28 1 -0.3633 -0.0052 1.0277 29 1 -0.3633 -0.8874 -0.5184 30 1 -0.3633 0.8926 -0.5093 31 1 1.8392 2.1308 0.0005 32 1 5.3966 -1.8274 0.5002 33 1 4.0439 -2.9843 0.4958 34 1 3.9003 -2.8071 -1.9733 35 1 5.2530 -1.6502 -1.9690 36 1 5.9133 -3.7860 -3.4739 37 1 8.7432 -6.0295 -3.9193 38 1 7.3014 -5.4485 -4.7865 39 1 8.4821 -3.2558 -3.4548 40 1 10.2221 -0.6507 -4.6007 41 1 5.6742 -6.6567 -3.3134 42 1 7.1207 -7.4251 -2.6166 43 1 5.0970 -5.7837 -1.0294 44 1 5.5009 -8.8034 -1.2179 45 1 4.3750 -7.9732 -0.1168 46 1 4.1168 -7.8982 -1.8761 47 1 6.2912 -6.7477 0.9181 48 1 7.4167 -7.5781 -0.1832 49 1 7.3976 -5.8000 -0.1043 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268107887.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:50 Heat of formation + Delta-G solvation = -6.161470 kcal Electronic energy + Delta-G solvation = -27414.957626 eV Core-core repulsion = 23696.366625 eV Total energy + Delta-G solvation = -3718.591001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.15162 -39.76432 -36.85824 -34.93924 -34.17202 -33.41200 -31.46619 -30.89207 -29.14924 -27.82550 -26.86482 -26.09892 -25.50395 -22.95631 -22.32939 -20.77359 -19.99688 -19.83182 -19.61585 -17.83248 -17.29279 -16.76773 -15.87793 -15.77162 -15.31482 -15.02588 -14.81029 -14.56601 -13.94187 -13.84916 -13.63356 -13.48560 -13.19700 -13.01392 -12.97443 -12.87495 -12.63809 -12.59615 -12.08971 -12.01153 -11.98148 -11.80899 -11.48327 -11.44153 -11.17645 -11.01795 -10.96806 -10.81215 -10.51133 -10.24173 -10.21341 -10.00209 -9.76755 -9.72730 -9.55681 -9.41461 -8.93051 -8.81857 -8.56357 -6.97790 -5.80175 -3.09629 0.55245 1.24275 1.63539 2.60235 2.96448 3.41288 3.46151 3.46921 3.49370 3.95740 4.54643 4.69979 4.90409 4.95792 4.97645 5.03586 5.06329 5.18573 5.21464 5.28627 5.32893 5.45909 5.52010 5.54290 5.61822 5.63815 5.67817 5.74121 5.84483 5.89865 5.96963 5.99919 6.06554 6.09901 6.13081 6.14672 6.22443 6.32213 6.46799 6.51120 6.68035 6.70265 6.86859 6.99791 7.61183 7.65847 7.91118 8.37983 8.59012 9.49846 10.05832 10.41463 11.42063 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007891 B = 0.003259 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3547.675371 B = 8590.734827 C =11453.418727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.065 3.935 3 C -0.272 4.272 4 S 0.130 5.870 5 C 0.060 3.940 6 C -0.026 4.026 7 C -0.137 4.137 8 C 0.516 3.484 9 O -0.538 6.538 10 N -0.708 5.708 11 C 0.136 3.864 12 H 0.091 0.909 13 C 0.144 3.856 14 N -0.731 5.731 15 C -0.243 4.243 16 H 0.069 0.931 17 C -0.011 4.011 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.122 4.122 24 C -0.092 4.092 25 C -0.146 4.146 26 C -0.138 4.138 27 N -0.473 5.473 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.174 0.826 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.403 0.597 37 H 0.032 0.968 38 H 0.023 0.977 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.047 0.953 47 H 0.042 0.958 48 H 0.037 0.963 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.266 -0.327 9.766 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 C -0.411 4.411 4 S 0.385 5.615 5 C -0.218 4.218 6 C -0.067 4.067 7 C -0.178 4.178 8 C 0.302 3.698 9 O -0.416 6.416 10 N -0.359 5.359 11 C 0.032 3.968 12 H 0.109 0.891 13 C 0.015 3.985 14 N -0.375 5.375 15 C -0.374 4.374 16 H 0.087 0.913 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.161 4.161 24 C -0.110 4.110 25 C -0.204 4.204 26 C -0.195 4.195 27 N -0.189 5.189 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.192 0.808 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.238 0.762 37 H 0.050 0.950 38 H 0.041 0.959 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.137 -0.645 10.362 19.188 hybrid contribution -0.490 0.792 -1.177 1.501 sum -16.628 0.147 9.185 18.996 Atomic orbital electron populations 1.20348 0.87251 1.03294 1.02834 1.20317 0.98235 0.86604 1.01545 1.26824 0.95523 1.03914 1.14856 1.84251 1.06800 1.03012 1.67404 1.27118 0.94005 0.98487 1.02207 1.19993 0.95777 0.93784 0.97182 1.21636 0.99921 0.98675 0.97588 1.20290 0.81819 0.83451 0.84201 1.90687 1.58460 1.60957 1.31543 1.45962 1.45869 1.35573 1.08486 1.21357 0.90200 0.84977 1.00302 0.89121 1.20966 0.94278 0.90354 0.92857 1.42328 1.59163 1.10185 1.25867 1.19170 1.22532 0.97143 0.98559 0.91253 1.24737 1.01114 0.96418 0.98489 1.69648 1.48540 1.04671 1.35069 0.86274 0.80321 0.77023 0.82572 1.21294 1.21697 1.21277 1.22018 0.99579 0.97255 0.97248 1.21136 0.97235 0.97898 0.94781 1.21870 0.99472 0.98146 1.00886 1.21828 0.98675 1.01711 0.97241 1.66151 1.04543 1.31547 1.16615 0.90759 0.90576 0.90824 0.80819 0.88584 0.88020 0.88662 0.88363 0.76195 0.95022 0.95922 0.77993 0.93450 0.92063 0.91268 0.90612 0.93183 0.93260 0.93375 0.93889 0.94413 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.31 36.01 0.37 -0.23 16 2 C 0.07 0.71 6.74 -84.22 -0.57 0.14 16 3 C -0.27 -2.65 11.13 29.12 0.32 -2.33 16 4 S 0.13 1.38 23.18 -107.50 -2.49 -1.11 16 5 C 0.06 0.72 6.64 -13.46 -0.09 0.63 16 6 C -0.03 -0.31 5.09 -27.88 -0.14 -0.45 16 7 C -0.14 -1.64 5.68 -27.88 -0.16 -1.80 16 8 C 0.52 7.50 6.39 -10.99 -0.07 7.43 16 9 O -0.54 -8.83 10.94 5.55 0.06 -8.77 16 10 N -0.71 -10.54 4.47 -53.81 -0.24 -10.78 16 11 C 0.14 2.17 2.33 -67.94 -0.16 2.02 16 12 H 0.09 1.64 5.92 -51.93 -0.31 1.33 16 13 C 0.14 2.72 5.82 -4.05 -0.02 2.70 16 14 N -0.73 -17.64 5.43 -59.91 -0.33 -17.96 16 15 C -0.24 -6.59 9.99 -15.05 -0.15 -6.74 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 18 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 19 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.12 -1.65 4.36 -26.73 -0.12 -1.76 16 24 C -0.09 -1.23 2.38 -90.62 -0.22 -1.44 16 25 C -0.15 -1.69 9.19 37.16 0.34 -1.34 16 26 C -0.14 -1.94 8.03 37.16 0.30 -1.64 16 27 N -0.47 -6.05 10.53 -8.06 -0.08 -6.14 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.43 8.12 -51.93 -0.42 0.00 16 31 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 33 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.40 5.82 8.60 -40.82 -0.35 5.47 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.39 9.89 7.33 -40.82 -0.30 9.59 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.11 5.19 -51.93 -0.27 0.84 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 1.25 4.76 -51.93 -0.25 1.00 16 LS Contribution 404.23 15.07 6.09 6.09 Total: -1.00 -31.05 404.23 -9.94 -41.00 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -8.20 Total: 12.63 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -0.45 Total: -5.23 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: 0.07 Total: -61.59 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.06 Total: -8.77 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.49 Total: -1.11 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.05 -9.94 -41.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268107887.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.836 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds