Wall clock time and date at job start Tue Mar 31 2020 22:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 C 1.53002 * 109.46838 * 269.99555 * 6 5 4 8 8 C 1.50703 * 109.47140 * 179.97438 * 7 6 5 9 9 O 1.21288 * 119.99760 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99928 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00040 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46922 * 325.00038 * 11 10 8 13 13 C 1.52995 * 109.47226 * 205.00540 * 11 10 8 14 14 N 1.46494 * 109.47432 * 54.99591 * 13 11 10 15 15 C 1.36942 * 119.99902 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00159 * 359.97438 * 15 14 13 17 17 C 1.38819 * 119.99713 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00163 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99843 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47063 * 59.99416 * 19 17 15 21 21 H 1.48499 * 109.47343 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47131 * 299.99924 * 19 17 15 23 23 C 1.52993 * 109.47132 * 84.99788 * 11 10 8 24 24 C 1.53003 * 109.47643 * 295.00265 * 23 11 10 25 25 C 1.52999 * 109.47298 * 175.00113 * 24 23 11 26 26 C 1.53003 * 109.46793 * 295.00324 * 24 23 11 27 27 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 28 28 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 31 31 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 32 32 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 33 33 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 34 34 H 1.09000 * 109.47428 * 300.00004 * 7 6 5 35 35 H 1.09004 * 109.47230 * 59.99848 * 7 6 5 36 36 H 0.96999 * 120.00210 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.46968 * 175.00198 * 13 11 10 38 38 H 1.09000 * 109.46854 * 294.99621 * 13 11 10 39 39 H 0.96999 * 120.00131 * 359.97438 * 14 13 11 40 40 H 0.96997 * 120.00101 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.47078 * 55.00634 * 23 11 10 42 42 H 1.09004 * 109.46906 * 175.00141 * 23 11 10 43 43 H 1.09000 * 109.46511 * 54.99661 * 24 23 11 44 44 H 1.08999 * 109.47069 * 59.99889 * 25 24 23 45 45 H 1.08994 * 109.46856 * 180.02562 * 25 24 23 46 46 H 1.08998 * 109.46820 * 300.00069 * 25 24 23 47 47 H 1.09005 * 109.46670 * 179.97438 * 26 24 23 48 48 H 1.09003 * 109.46736 * 299.99420 * 26 24 23 49 49 H 1.08998 * 109.47494 * 59.99672 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5074 -1.4589 8 6 5.7934 -3.6522 -1.4659 9 8 6.1886 -4.1184 -0.4183 10 7 6.2297 -4.1586 -2.6361 11 6 7.1819 -5.2719 -2.6429 12 1 7.8672 -5.1690 -1.8015 13 6 7.9749 -5.2568 -3.9512 14 7 8.6069 -3.9466 -4.1242 15 6 9.3729 -3.6967 -5.2314 16 1 9.5115 -4.4657 -5.9770 17 6 9.9722 -2.4552 -5.3950 18 7 9.8037 -1.5182 -4.4862 19 14 11.0165 -2.1141 -6.9058 20 1 10.1878 -2.2764 -8.1274 21 1 11.5387 -0.7254 -6.8433 22 1 12.1528 -3.0693 -6.9481 23 6 6.4216 -6.5941 -2.5225 24 6 5.7291 -6.6621 -1.1598 25 6 4.8687 -7.9251 -1.0874 26 6 6.7846 -6.6997 -0.0527 27 7 2.2199 -1.1083 -0.0064 28 1 -0.3633 -0.0052 1.0277 29 1 -0.3633 -0.8874 -0.5184 30 1 -0.3633 0.8926 -0.5093 31 1 1.8392 2.1308 0.0005 32 1 5.3966 -1.8274 0.5002 33 1 4.0439 -2.9843 0.4958 34 1 3.9003 -2.8071 -1.9733 35 1 5.2530 -1.6502 -1.9690 36 1 5.9133 -3.7860 -3.4739 37 1 8.7432 -6.0295 -3.9193 38 1 7.3014 -5.4485 -4.7865 39 1 8.4821 -3.2558 -3.4548 40 1 10.2221 -0.6507 -4.6007 41 1 5.6742 -6.6567 -3.3134 42 1 7.1207 -7.4251 -2.6166 43 1 5.0970 -5.7837 -1.0294 44 1 5.5009 -8.8034 -1.2179 45 1 4.3750 -7.9732 -0.1168 46 1 4.1168 -7.8982 -1.8761 47 1 6.2912 -6.7477 0.9181 48 1 7.4167 -7.5781 -0.1832 49 1 7.3976 -5.8000 -0.1043 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268107887.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:49 Heat of formation + Delta-G solvation = -24.973127 kcal Electronic energy + Delta-G solvation = -27415.773361 eV Core-core repulsion = 23696.366625 eV Total energy + Delta-G solvation = -3719.406736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.21823 -40.75407 -38.12073 -36.43257 -35.11972 -34.95992 -33.01260 -32.00055 -30.55329 -28.53846 -27.92379 -27.17116 -27.03895 -24.63793 -23.38416 -22.09929 -21.19045 -20.75356 -20.64606 -19.22190 -18.69276 -17.95300 -17.13808 -17.00561 -16.56161 -16.10818 -15.93590 -15.72165 -15.37909 -15.21693 -14.73720 -14.65825 -14.48517 -14.30440 -14.17402 -13.75084 -13.62666 -13.51205 -13.27257 -13.13715 -12.98083 -12.94264 -12.81136 -12.74331 -12.51961 -12.32309 -12.20197 -12.14556 -12.11133 -11.86849 -11.58672 -11.35130 -11.19903 -10.94829 -10.68511 -10.59791 -10.37786 -9.81188 -9.64087 -8.98342 -7.92447 -5.21299 -0.28655 0.41270 0.81473 1.49288 1.51321 1.57388 1.75520 1.79286 2.34100 2.57563 3.09645 3.41588 3.66668 3.77641 3.98143 4.00994 4.10300 4.13186 4.21925 4.28369 4.29996 4.38616 4.43061 4.47177 4.58404 4.70439 4.77206 4.78643 4.83738 4.85228 4.92346 4.92652 4.96666 4.99892 5.03122 5.05880 5.12699 5.20219 5.28827 5.37917 5.42415 5.52555 5.61263 5.68190 5.73558 6.28510 6.70670 6.77299 7.36201 7.40200 8.10262 8.34535 9.30136 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007891 B = 0.003259 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3547.675371 B = 8590.734827 C =11453.418727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.044 3.956 3 C -0.262 4.262 4 S 0.129 5.871 5 C 0.043 3.957 6 C -0.018 4.018 7 C -0.125 4.125 8 C 0.514 3.486 9 O -0.558 6.558 10 N -0.708 5.708 11 C 0.148 3.852 12 H 0.067 0.933 13 C 0.144 3.856 14 N -0.741 5.741 15 C -0.245 4.245 16 H 0.076 0.924 17 C -0.071 4.071 18 N -0.965 5.965 19 Si 0.970 3.030 20 H -0.277 1.277 21 H -0.298 1.298 22 H -0.281 1.281 23 C -0.113 4.113 24 C -0.089 4.089 25 C -0.141 4.141 26 C -0.133 4.133 27 N -0.494 5.494 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.203 0.797 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.406 0.594 37 H 0.033 0.967 38 H 0.036 0.964 39 H 0.376 0.624 40 H 0.250 0.750 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.041 0.959 48 H 0.047 0.953 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.621 -0.686 8.998 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 C -0.400 4.400 4 S 0.385 5.615 5 C -0.234 4.234 6 C -0.060 4.060 7 C -0.167 4.167 8 C 0.301 3.699 9 O -0.437 6.437 10 N -0.359 5.359 11 C 0.043 3.957 12 H 0.085 0.915 13 C 0.018 3.982 14 N -0.384 5.384 15 C -0.377 4.377 16 H 0.094 0.906 17 C -0.264 4.264 18 N -0.616 5.616 19 Si 0.800 3.200 20 H -0.203 1.203 21 H -0.224 1.224 22 H -0.208 1.208 23 C -0.152 4.152 24 C -0.107 4.107 25 C -0.199 4.199 26 C -0.190 4.190 27 N -0.210 5.210 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.220 0.780 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.241 0.759 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.208 0.792 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.066 0.934 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.516 -1.050 9.581 19.993 hybrid contribution -0.095 0.881 -0.892 1.257 sum -17.611 -0.169 8.689 19.639 Atomic orbital electron populations 1.20438 0.85186 1.04128 1.03700 1.20831 0.99690 0.86388 1.01883 1.27193 0.94538 1.05040 1.13267 1.84235 1.07951 1.02179 1.67175 1.27036 0.93996 0.99026 1.03360 1.19850 0.95596 0.93736 0.96778 1.21558 0.99628 0.97492 0.98009 1.20683 0.81843 0.83674 0.83687 1.90685 1.59203 1.61656 1.32178 1.45943 1.45609 1.35530 1.08821 1.21133 0.90193 0.86797 0.97618 0.91493 1.21104 0.94457 0.87902 0.94787 1.42488 1.59268 1.11773 1.24898 1.19573 1.21854 0.97115 0.99127 0.90597 1.25505 1.02996 0.96566 1.01339 1.69804 1.49999 1.04829 1.36956 0.85263 0.78825 0.76291 0.79646 1.20278 1.22402 1.20767 1.21951 0.99710 0.95749 0.97814 1.21073 0.96976 0.98494 0.94199 1.21812 0.99418 0.97179 1.01452 1.21758 0.98719 1.00844 0.97665 1.66166 1.04930 1.32939 1.16967 0.89806 0.91115 0.88638 0.77969 0.89141 0.88760 0.87348 0.88309 0.75855 0.94937 0.94619 0.79217 0.94115 0.90797 0.90373 0.92009 0.92279 0.92976 0.92482 0.93972 0.93435 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.31 71.24 0.73 -0.29 16 2 C 0.04 0.89 6.74 41.52 0.28 1.17 16 3 C -0.26 -4.65 11.13 66.78 0.74 -3.91 16 4 S 0.13 2.69 23.18 -56.49 -1.31 1.38 16 5 C 0.04 1.04 6.64 88.52 0.59 1.63 16 6 C -0.02 -0.45 5.09 29.85 0.15 -0.29 16 7 C -0.13 -3.03 5.68 29.85 0.17 -2.87 16 8 C 0.51 15.17 6.39 87.66 0.56 15.73 16 9 O -0.56 -18.82 10.94 -3.05 -0.03 -18.85 16 10 N -0.71 -21.10 4.47 -442.55 -1.98 -23.08 16 11 C 0.15 4.68 2.33 44.99 0.10 4.78 16 12 H 0.07 2.48 5.92 -2.39 -0.01 2.47 16 13 C 0.14 5.38 5.82 86.38 0.50 5.88 16 14 N -0.74 -35.87 5.43 -343.46 -1.87 -37.74 16 15 C -0.24 -13.20 9.99 84.03 0.84 -12.36 16 16 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 17 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 18 N -0.97 -57.67 13.06 21.65 0.28 -57.39 16 19 Si 0.97 45.19 29.55 68.60 2.03 47.22 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 21 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 C -0.11 -2.90 4.36 30.59 0.13 -2.76 16 24 C -0.09 -2.28 2.38 -10.79 -0.03 -2.31 16 25 C -0.14 -2.96 9.19 71.98 0.66 -2.30 16 26 C -0.13 -3.71 8.03 71.98 0.58 -3.13 16 27 N -0.49 -12.41 10.53 -179.40 -1.89 -14.30 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 0.85 8.12 -2.38 -0.02 0.83 16 31 H 0.20 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.09 2.24 8.10 -2.39 -0.02 2.22 16 33 H 0.09 2.39 8.10 -2.39 -0.02 2.37 16 34 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.41 11.62 8.60 -92.71 -0.80 10.83 16 37 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.38 19.60 7.33 -92.71 -0.68 18.92 16 40 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 1.78 5.19 -2.39 -0.01 1.77 16 44 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 48 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.05 1.73 4.76 -2.39 -0.01 1.71 16 Total: -1.00 -66.24 404.23 1.20 -65.04 By element: Atomic # 1 Polarization: 42.79 SS G_CDS: -0.52 Total: 42.27 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 6.49 Total: -4.55 kcal Atomic # 7 Polarization: -127.06 SS G_CDS: -5.45 Total: -132.51 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.03 Total: -18.85 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.31 Total: 1.38 kcal Total: -66.24 1.20 -65.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268107887.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.064 kcal (2) G-P(sol) polarization free energy of solvation -66.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds