Wall clock time and date at job start Tue Mar 31 2020 22:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29429 * 124.80506 * 2 1 4 4 C 1.30936 * 117.36418 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.90280 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47446 * 270.00075 * 5 4 3 7 7 C 1.53005 * 109.47179 * 175.00246 * 6 5 4 8 8 C 1.52999 * 109.47576 * 294.99965 * 6 5 4 9 9 C 1.35670 * 114.19291 * 0.02562 * 4 3 2 10 10 C 1.46682 * 126.13030 * 180.02562 * 9 4 3 11 11 O 1.21689 * 119.99724 * 359.97438 * 10 9 4 12 12 N 1.34773 * 120.00228 * 179.97438 * 10 9 4 13 13 C 1.46490 * 120.00384 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47559 * 179.97438 * 13 12 10 15 15 H 1.09008 * 109.46613 * 54.99525 * 14 13 12 16 16 C 1.53001 * 109.47108 * 295.00069 * 14 13 12 17 17 C 1.52996 * 109.47530 * 174.99686 * 14 13 12 18 18 N 1.46498 * 109.47059 * 184.99929 * 17 14 13 19 19 C 1.36943 * 119.99752 * 179.72430 * 18 17 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 17 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 17 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47290 * 120.00044 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00049 * 23 21 19 27 27 S 1.70954 * 124.80565 * 180.27990 * 2 1 3 28 28 H 1.09000 * 109.47281 * 89.99885 * 1 2 3 29 29 H 1.09005 * 109.46768 * 209.99605 * 1 2 3 30 30 H 1.08994 * 109.47220 * 329.99851 * 1 2 3 31 31 H 1.08995 * 109.47139 * 30.00662 * 5 4 3 32 32 H 1.09004 * 109.47143 * 150.00336 * 5 4 3 33 33 H 1.08998 * 109.46969 * 55.00511 * 6 5 4 34 34 H 1.08993 * 109.47290 * 59.99947 * 7 6 5 35 35 H 1.09000 * 109.47205 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.46953 * 300.00430 * 7 6 5 37 37 H 1.09000 * 109.47120 * 179.97438 * 8 6 5 38 38 H 1.08998 * 109.47417 * 300.00271 * 8 6 5 39 39 H 1.09005 * 109.46903 * 60.00054 * 8 6 5 40 40 H 0.97002 * 119.99300 * 359.97438 * 12 10 9 41 41 H 1.08998 * 109.47374 * 59.99359 * 13 12 10 42 42 H 1.09002 * 109.47263 * 299.99603 * 13 12 10 43 43 H 1.08995 * 109.46988 * 299.99895 * 16 14 13 44 44 H 1.09001 * 109.46786 * 59.99727 * 16 14 13 45 45 H 1.09001 * 109.47309 * 179.97438 * 16 14 13 46 46 H 1.09004 * 109.47066 * 65.00196 * 17 14 13 47 47 H 1.08994 * 109.46974 * 305.00344 * 17 14 13 48 48 H 0.97001 * 120.00384 * 0.02562 * 18 17 14 49 49 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5441 0.8932 0.0005 5 6 4.5197 2.0418 0.0000 6 6 4.8503 2.4295 -1.4426 7 6 5.7417 3.6731 -1.4449 8 6 5.5849 1.2743 -2.1257 9 6 3.9351 -0.4060 0.0004 10 6 5.3188 -0.8926 0.0015 11 8 6.2425 -0.1003 0.0020 12 7 5.5673 -2.2173 0.0018 13 6 6.9492 -2.7034 0.0022 14 6 6.9518 -4.2334 0.0032 15 1 6.3629 -4.5982 -0.8385 16 6 6.3428 -4.7436 1.3108 17 6 8.3896 -4.7412 -0.1221 18 7 8.3832 -6.2013 -0.2413 19 6 9.5638 -6.8828 -0.3716 20 1 10.4999 -6.3442 -0.3820 21 6 9.5574 -8.2658 -0.4903 22 7 8.4165 -8.9221 -0.4781 23 14 11.1679 -9.1955 -0.6673 24 1 12.2990 -8.2335 -0.6520 25 1 11.3151 -10.1499 0.4608 26 1 11.1699 -9.9422 -1.9509 27 16 2.4828 -1.4037 -0.0069 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 4.0765 2.8951 0.5132 32 1 5.4331 1.7429 0.5143 33 1 3.9275 2.6430 -1.9820 34 1 6.6644 3.4597 -0.9055 35 1 5.9769 3.9496 -2.4727 36 1 5.2183 4.4961 -0.9582 37 1 5.8200 1.5505 -3.1536 38 1 6.5077 1.0609 -1.5863 39 1 4.9499 0.3883 -2.1241 40 1 4.8310 -2.8488 0.0017 41 1 7.4623 -2.3390 0.8922 42 1 7.4627 -2.3394 -0.8877 43 1 6.9316 -4.3788 2.1524 44 1 5.3185 -4.3819 1.3999 45 1 6.3442 -5.8336 1.3113 46 1 8.9557 -4.4514 0.7631 47 1 8.8525 -4.3063 -1.0079 48 1 7.5424 -6.6850 -0.2323 49 1 8.4121 -9.8885 -0.5607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270444336.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:28 Heat of formation + Delta-G solvation = -6.650825 kcal Electronic energy + Delta-G solvation = -27144.030121 eV Core-core repulsion = 23425.417900 eV Total energy + Delta-G solvation = -3718.612221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85295 -39.35294 -36.97671 -36.15597 -34.40766 -32.83876 -32.39181 -30.18822 -29.22648 -28.16283 -27.15795 -26.40571 -25.25439 -23.37557 -22.73997 -21.52704 -20.39499 -20.37453 -19.39294 -18.14505 -17.34556 -16.74810 -16.05025 -15.95363 -15.39696 -15.18787 -14.79278 -14.43604 -14.39187 -14.21130 -13.93776 -13.90034 -13.62731 -13.08699 -12.99004 -12.85284 -12.71482 -12.60621 -12.42074 -12.37476 -12.09329 -11.98533 -11.55566 -11.09808 -11.06441 -10.95614 -10.93494 -10.82742 -10.73816 -10.57892 -10.44032 -10.20306 -10.04231 -9.85235 -9.77403 -9.68864 -9.13064 -8.94534 -8.89777 -6.94059 -5.78819 -3.07232 -0.05395 0.84555 1.25087 2.16585 3.00124 3.00558 3.42462 3.48504 3.50512 3.63375 4.45741 4.57550 4.59647 4.71359 4.82812 4.85212 4.95996 4.98106 5.04639 5.09771 5.17392 5.34038 5.37592 5.52462 5.53490 5.56161 5.63077 5.66825 5.76419 5.83464 5.87290 5.91755 5.93619 5.97194 6.06178 6.12593 6.18210 6.21564 6.30799 6.37615 6.54576 6.62253 6.74010 6.83458 7.25536 7.38787 7.69567 8.03457 8.40342 9.51729 10.08723 10.43410 11.44270 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016335 B = 0.002259 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.749899 B =12390.506616 C =13716.467713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.061 3.939 3 N -0.477 5.477 4 C 0.155 3.845 5 C -0.053 4.053 6 C -0.080 4.080 7 C -0.143 4.143 8 C -0.150 4.150 9 C -0.294 4.294 10 C 0.593 3.407 11 O -0.515 6.515 12 N -0.719 5.719 13 C 0.128 3.872 14 C -0.112 4.112 15 H 0.076 0.924 16 C -0.142 4.142 17 C 0.161 3.839 18 N -0.731 5.731 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 S 0.155 5.845 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.397 0.603 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.023 0.977 47 H 0.021 0.979 48 H 0.384 0.616 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.400 22.069 0.903 28.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.214 4.214 3 N -0.192 5.192 4 C 0.017 3.983 5 C -0.093 4.093 6 C -0.099 4.099 7 C -0.201 4.201 8 C -0.207 4.207 9 C -0.417 4.417 10 C 0.378 3.622 11 O -0.393 6.393 12 N -0.371 5.371 13 C 0.005 3.995 14 C -0.131 4.131 15 H 0.095 0.905 16 C -0.199 4.199 17 C 0.033 3.967 18 N -0.376 5.376 19 C -0.369 4.369 20 H 0.089 0.911 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 S 0.413 5.587 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.231 0.769 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.041 0.959 47 H 0.039 0.961 48 H 0.218 0.782 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.052 21.959 0.890 27.817 hybrid contribution 0.598 -0.533 -0.147 0.814 sum -16.454 21.426 0.743 27.025 Atomic orbital electron populations 1.20537 0.84664 1.04648 1.04311 1.27377 1.02091 0.91098 1.00829 1.66078 1.04481 1.31185 1.17415 1.20613 0.89687 0.93504 0.94459 1.20605 0.96933 0.93241 0.98510 1.20940 0.98659 0.95898 0.94425 1.21797 0.99851 0.96681 1.01750 1.22124 1.01931 0.97093 0.99568 1.25508 0.97978 0.97115 1.21144 1.16603 0.85957 0.82571 0.77077 1.90748 1.44313 1.54558 1.49730 1.45977 1.10023 1.06032 1.75029 1.21473 0.80999 0.94304 1.02712 1.21571 0.99805 0.92483 0.99217 0.90521 1.21798 0.98775 1.02747 0.96613 1.20563 0.91514 0.86538 0.98062 1.42347 1.06794 0.99835 1.88576 1.19282 0.86392 0.89465 1.41741 0.91085 1.24741 0.96887 0.96443 1.03014 1.69668 1.23860 1.07117 1.57674 0.86108 0.82920 0.79872 0.77253 1.20531 1.21874 1.21875 1.83962 0.96752 1.11494 1.66530 0.89096 0.89673 0.88881 0.90472 0.87457 0.91842 0.92172 0.92650 0.92856 0.93780 0.89765 0.93859 0.76855 0.90954 0.90962 0.92701 0.94060 0.91026 0.95931 0.96084 0.78211 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.46 36.00 0.38 -0.02 16 2 C 0.06 0.54 7.39 -13.29 -0.10 0.44 16 3 N -0.48 -5.28 10.50 -7.70 -0.08 -5.36 16 4 C 0.16 1.81 5.58 -83.89 -0.47 1.34 16 5 C -0.05 -0.58 4.82 -27.89 -0.13 -0.72 16 6 C -0.08 -0.83 2.91 -90.62 -0.26 -1.09 16 7 C -0.14 -1.25 9.19 37.16 0.34 -0.91 16 8 C -0.15 -1.75 7.63 37.16 0.28 -1.47 16 9 C -0.29 -3.38 5.48 -37.09 -0.20 -3.59 16 10 C 0.59 7.62 6.70 -12.85 -0.09 7.54 16 11 O -0.52 -7.54 10.95 5.20 0.06 -7.49 16 12 N -0.72 -8.62 5.28 -61.62 -0.33 -8.95 16 13 C 0.13 1.71 5.06 -4.05 -0.02 1.69 16 14 C -0.11 -1.68 2.46 -90.62 -0.22 -1.91 16 15 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 16 C -0.14 -2.07 8.94 37.16 0.33 -1.73 16 17 C 0.16 3.14 5.65 -4.04 -0.02 3.12 16 18 N -0.73 -18.11 5.33 -59.91 -0.32 -18.42 16 19 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 23 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 S 0.16 1.35 22.31 -107.50 -2.40 -1.05 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.11 1.30 6.01 -51.93 -0.31 0.99 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 1.11 5.89 -51.93 -0.31 0.81 16 39 H 0.04 0.54 5.79 -51.93 -0.30 0.24 16 40 H 0.40 4.17 6.84 -40.82 -0.28 3.89 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 45 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.38 9.89 6.85 -40.82 -0.28 9.61 16 49 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 400.07 15.07 6.03 6.03 Total: -1.00 -31.90 400.07 -9.88 -41.78 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.11 Total: 7.96 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.43 Total: -4.59 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.00 Total: -59.99 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.06 Total: -7.49 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.40 Total: -1.05 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.90 -9.88 -41.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270444336.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.131 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds