Wall clock time and date at job start Tue Mar 31 2020 22:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29429 * 124.80506 * 2 1 4 4 C 1.30936 * 117.36418 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.90280 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47446 * 270.00075 * 5 4 3 7 7 C 1.53005 * 109.47179 * 175.00246 * 6 5 4 8 8 C 1.52999 * 109.47576 * 294.99965 * 6 5 4 9 9 C 1.35670 * 114.19291 * 0.02562 * 4 3 2 10 10 C 1.46682 * 126.13030 * 180.02562 * 9 4 3 11 11 O 1.21689 * 119.99724 * 359.97438 * 10 9 4 12 12 N 1.34773 * 120.00228 * 179.97438 * 10 9 4 13 13 C 1.46490 * 120.00384 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47559 * 179.97438 * 13 12 10 15 15 H 1.09008 * 109.46613 * 54.99525 * 14 13 12 16 16 C 1.53001 * 109.47108 * 295.00069 * 14 13 12 17 17 C 1.52996 * 109.47530 * 174.99686 * 14 13 12 18 18 N 1.46498 * 109.47059 * 184.99929 * 17 14 13 19 19 C 1.36943 * 119.99752 * 179.72430 * 18 17 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 17 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 17 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47290 * 120.00044 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00049 * 23 21 19 27 27 S 1.70954 * 124.80565 * 180.27990 * 2 1 3 28 28 H 1.09000 * 109.47281 * 89.99885 * 1 2 3 29 29 H 1.09005 * 109.46768 * 209.99605 * 1 2 3 30 30 H 1.08994 * 109.47220 * 329.99851 * 1 2 3 31 31 H 1.08995 * 109.47139 * 30.00662 * 5 4 3 32 32 H 1.09004 * 109.47143 * 150.00336 * 5 4 3 33 33 H 1.08998 * 109.46969 * 55.00511 * 6 5 4 34 34 H 1.08993 * 109.47290 * 59.99947 * 7 6 5 35 35 H 1.09000 * 109.47205 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.46953 * 300.00430 * 7 6 5 37 37 H 1.09000 * 109.47120 * 179.97438 * 8 6 5 38 38 H 1.08998 * 109.47417 * 300.00271 * 8 6 5 39 39 H 1.09005 * 109.46903 * 60.00054 * 8 6 5 40 40 H 0.97002 * 119.99300 * 359.97438 * 12 10 9 41 41 H 1.08998 * 109.47374 * 59.99359 * 13 12 10 42 42 H 1.09002 * 109.47263 * 299.99603 * 13 12 10 43 43 H 1.08995 * 109.46988 * 299.99895 * 16 14 13 44 44 H 1.09001 * 109.46786 * 59.99727 * 16 14 13 45 45 H 1.09001 * 109.47309 * 179.97438 * 16 14 13 46 46 H 1.09004 * 109.47066 * 65.00196 * 17 14 13 47 47 H 1.08994 * 109.46974 * 305.00344 * 17 14 13 48 48 H 0.97001 * 120.00384 * 0.02562 * 18 17 14 49 49 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5441 0.8932 0.0005 5 6 4.5197 2.0418 0.0000 6 6 4.8503 2.4295 -1.4426 7 6 5.7417 3.6731 -1.4449 8 6 5.5849 1.2743 -2.1257 9 6 3.9351 -0.4060 0.0004 10 6 5.3188 -0.8926 0.0015 11 8 6.2425 -0.1003 0.0020 12 7 5.5673 -2.2173 0.0018 13 6 6.9492 -2.7034 0.0022 14 6 6.9518 -4.2334 0.0032 15 1 6.3629 -4.5982 -0.8385 16 6 6.3428 -4.7436 1.3108 17 6 8.3896 -4.7412 -0.1221 18 7 8.3832 -6.2013 -0.2413 19 6 9.5638 -6.8828 -0.3716 20 1 10.4999 -6.3442 -0.3820 21 6 9.5574 -8.2658 -0.4903 22 7 8.4165 -8.9221 -0.4781 23 14 11.1679 -9.1955 -0.6673 24 1 12.2990 -8.2335 -0.6520 25 1 11.3151 -10.1499 0.4608 26 1 11.1699 -9.9422 -1.9509 27 16 2.4828 -1.4037 -0.0069 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 4.0765 2.8951 0.5132 32 1 5.4331 1.7429 0.5143 33 1 3.9275 2.6430 -1.9820 34 1 6.6644 3.4597 -0.9055 35 1 5.9769 3.9496 -2.4727 36 1 5.2183 4.4961 -0.9582 37 1 5.8200 1.5505 -3.1536 38 1 6.5077 1.0609 -1.5863 39 1 4.9499 0.3883 -2.1241 40 1 4.8310 -2.8488 0.0017 41 1 7.4623 -2.3390 0.8922 42 1 7.4627 -2.3394 -0.8877 43 1 6.9316 -4.3788 2.1524 44 1 5.3185 -4.3819 1.3999 45 1 6.3442 -5.8336 1.3113 46 1 8.9557 -4.4514 0.7631 47 1 8.8525 -4.3063 -1.0079 48 1 7.5424 -6.6850 -0.2323 49 1 8.4121 -9.8885 -0.5607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270444336.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:27 Heat of formation + Delta-G solvation = -26.669264 kcal Electronic energy + Delta-G solvation = -27144.898186 eV Core-core repulsion = 23425.417900 eV Total energy + Delta-G solvation = -3719.480286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70203 -40.30457 -38.27496 -37.05958 -35.94025 -34.20353 -33.29767 -31.94944 -29.97984 -29.02615 -28.01494 -27.67804 -26.85073 -24.52199 -23.98733 -22.59702 -21.59546 -21.19640 -20.47707 -19.15462 -18.93877 -17.87226 -17.12708 -16.93524 -16.51982 -16.21591 -16.12282 -15.56748 -15.50447 -15.36115 -15.09738 -14.80619 -14.71929 -14.61170 -14.15516 -13.70388 -13.60260 -13.53311 -13.37516 -13.23270 -13.19142 -12.96639 -12.88345 -12.80526 -12.36308 -12.19903 -12.13618 -12.00618 -11.88352 -11.79858 -11.72172 -11.67700 -11.60837 -11.04931 -10.95468 -10.72650 -10.55137 -10.13170 -9.71676 -8.99341 -7.95745 -5.23826 -0.82128 0.12873 0.50352 1.34845 1.47979 1.48064 1.58378 2.00538 2.07250 2.56435 2.97508 3.38307 3.65662 3.71782 3.83037 3.90040 3.94329 4.03139 4.04713 4.16630 4.23498 4.34531 4.52134 4.57820 4.65186 4.67997 4.69369 4.72870 4.75036 4.82676 4.89463 4.91895 4.99459 5.00892 5.03046 5.10563 5.12284 5.15223 5.24538 5.31700 5.35523 5.40103 5.44434 5.50476 5.59934 6.27139 6.33853 6.59212 7.06515 7.34102 8.09151 8.33175 9.27986 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016335 B = 0.002259 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.749899 B =12390.506616 C =13716.467713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.067 3.933 3 N -0.501 5.501 4 C 0.150 3.850 5 C -0.052 4.052 6 C -0.075 4.075 7 C -0.140 4.140 8 C -0.143 4.143 9 C -0.323 4.323 10 C 0.592 3.408 11 O -0.538 6.538 12 N -0.714 5.714 13 C 0.141 3.859 14 C -0.096 4.096 15 H 0.077 0.923 16 C -0.136 4.136 17 C 0.158 3.842 18 N -0.742 5.742 19 C -0.244 4.244 20 H 0.074 0.926 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.972 3.028 24 H -0.268 1.268 25 H -0.293 1.293 26 H -0.293 1.293 27 S 0.193 5.807 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.030 0.970 40 H 0.405 0.595 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.044 0.956 46 H 0.023 0.977 47 H 0.021 0.979 48 H 0.376 0.624 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.690 22.937 0.893 29.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.208 4.208 3 N -0.217 5.217 4 C 0.012 3.988 5 C -0.091 4.091 6 C -0.095 4.095 7 C -0.197 4.197 8 C -0.200 4.200 9 C -0.447 4.447 10 C 0.379 3.621 11 O -0.418 6.418 12 N -0.366 5.366 13 C 0.018 3.982 14 C -0.115 4.115 15 H 0.095 0.905 16 C -0.193 4.193 17 C 0.031 3.969 18 N -0.385 5.385 19 C -0.376 4.376 20 H 0.092 0.908 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.801 3.199 24 H -0.192 1.192 25 H -0.220 1.220 26 H -0.220 1.220 27 S 0.451 5.549 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.241 0.759 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.041 0.959 47 H 0.039 0.961 48 H 0.209 0.791 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.349 22.851 0.885 29.320 hybrid contribution 0.907 -0.742 -0.140 1.180 sum -17.442 22.109 0.745 28.171 Atomic orbital electron populations 1.20781 0.81868 1.06018 1.05698 1.28118 1.03668 0.90657 0.98343 1.66141 1.04245 1.32224 1.19072 1.20741 0.90246 0.93708 0.94133 1.20556 0.96349 0.93507 0.98715 1.20902 0.98680 0.95983 0.93897 1.21769 0.99357 0.96275 1.02307 1.22031 1.00984 0.97211 0.99809 1.25395 0.98319 0.97938 1.23048 1.16789 0.86491 0.82384 0.76470 1.90740 1.45286 1.55073 1.50710 1.45824 1.09592 1.06116 1.75037 1.21199 0.81876 0.92700 1.02473 1.21351 0.96959 0.93537 0.99660 0.90497 1.21728 1.00584 1.00919 0.96105 1.20705 0.94529 0.83847 0.97797 1.42521 1.05669 1.01878 1.88431 1.19658 0.87511 0.89997 1.40398 0.90803 1.25537 1.00020 0.97435 1.03736 1.69809 1.25797 1.07029 1.59262 0.85093 0.79590 0.78479 0.76722 1.19213 1.21990 1.22008 1.83762 0.94848 1.10469 1.65826 0.87484 0.87476 0.88304 0.89752 0.88990 0.91881 0.92779 0.91920 0.91611 0.93149 0.91466 0.95075 0.75887 0.91084 0.91452 0.92713 0.91081 0.93678 0.95873 0.96107 0.79098 0.93975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.46 71.24 0.75 0.18 16 2 C 0.07 1.03 7.39 88.46 0.65 1.68 16 3 N -0.50 -10.44 10.50 -178.29 -1.87 -12.32 16 4 C 0.15 3.43 5.58 42.10 0.24 3.66 16 5 C -0.05 -1.12 4.82 29.85 0.14 -0.98 16 6 C -0.08 -1.53 2.91 -10.79 -0.03 -1.56 16 7 C -0.14 -2.33 9.19 71.98 0.66 -1.67 16 8 C -0.14 -3.36 7.63 71.98 0.55 -2.81 16 9 C -0.32 -7.21 5.48 23.88 0.13 -7.08 16 10 C 0.59 15.05 6.70 86.45 0.58 15.63 16 11 O -0.54 -15.98 10.95 -4.31 -0.05 -16.03 16 12 N -0.71 -16.46 5.28 -467.10 -2.47 -18.92 16 13 C 0.14 3.67 5.06 86.38 0.44 4.11 16 14 C -0.10 -2.84 2.46 -10.79 -0.03 -2.86 16 15 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 16 C -0.14 -3.84 8.94 71.98 0.64 -3.19 16 17 C 0.16 6.15 5.65 86.38 0.49 6.63 16 18 N -0.74 -37.02 5.33 -343.46 -1.83 -38.85 16 19 C -0.24 -13.58 9.99 84.03 0.84 -12.74 16 20 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 21 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 22 N -0.97 -58.65 13.06 21.65 0.28 -58.37 16 23 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 S 0.19 2.99 22.31 -56.49 -1.26 1.73 16 28 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.09 2.29 6.01 -2.39 -0.01 2.28 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.82 5.89 -2.39 -0.01 1.81 16 39 H 0.03 0.78 5.79 -2.38 -0.01 0.77 16 40 H 0.41 7.88 6.84 -92.71 -0.63 7.25 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.56 7.18 -2.39 -0.02 1.55 16 45 H 0.04 1.52 7.18 -2.39 -0.02 1.51 16 46 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.38 19.71 6.85 -92.71 -0.64 19.08 16 49 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -68.71 400.07 1.04 -67.66 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.31 Total: 31.82 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 6.52 Total: -4.83 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -5.89 Total: -128.46 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.05 Total: -16.03 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.26 Total: 1.73 kcal Total: -68.71 1.04 -67.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270444336.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.995 kcal (2) G-P(sol) polarization free energy of solvation -68.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds