Wall clock time and date at job start Tue Mar 31 2020 23:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46716 * 2 1 4 4 C 1.52997 * 109.46931 * 119.99160 * 2 1 3 5 5 H 1.08989 * 109.47731 * 303.99699 * 4 2 1 6 6 C 1.53003 * 109.46781 * 64.00085 * 4 2 1 7 7 N 1.46501 * 109.47380 * 174.99326 * 6 4 2 8 8 C 1.34767 * 120.00410 * 179.97438 * 7 6 4 9 9 O 1.21286 * 119.99897 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.00547 * 180.02562 * 8 7 6 11 11 N 1.46496 * 109.47433 * 180.02562 * 10 8 7 12 12 N 1.28883 * 125.44844 * 90.00120 * 11 10 8 13 13 C 1.31036 * 107.91543 * 179.97438 * 12 11 10 14 14 N 1.33310 * 106.90164 * 0.02562 * 13 12 11 15 15 N 1.28781 * 125.45025 * 269.69549 * 11 10 8 16 16 N 1.46905 * 109.46988 * 183.99513 * 4 2 1 17 17 C 1.46900 * 110.99861 * 304.49542 * 16 4 2 18 18 C 1.50698 * 109.47035 * 184.52440 * 17 16 4 19 19 O 1.21296 * 119.99966 * 0.02562 * 18 17 16 20 20 N 1.34785 * 120.00261 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99966 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00236 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99854 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99581 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99930 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47336 * 359.97438 * 25 23 21 27 27 H 1.48508 * 109.46917 * 119.99889 * 25 23 21 28 28 H 1.48494 * 109.47120 * 239.99555 * 25 23 21 29 29 H 1.09002 * 109.47277 * 300.00245 * 1 2 3 30 30 H 1.09000 * 109.46889 * 60.00412 * 1 2 3 31 31 H 1.09002 * 109.46614 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47610 * 240.00127 * 2 1 3 33 33 H 1.09002 * 109.46649 * 180.80685 * 3 2 1 34 34 H 1.09005 * 109.46864 * 300.80534 * 3 2 1 35 35 H 1.09000 * 109.47191 * 60.80418 * 3 2 1 36 36 H 1.09006 * 109.47183 * 294.99625 * 6 4 2 37 37 H 1.09004 * 109.47566 * 54.99464 * 6 4 2 38 38 H 0.97006 * 119.99617 * 0.02562 * 7 6 4 39 39 H 1.09006 * 109.46887 * 300.00743 * 10 8 7 40 40 H 1.09004 * 109.46840 * 59.99956 * 10 8 7 41 41 H 1.08004 * 126.54831 * 179.97438 * 13 12 11 42 42 H 1.00890 * 111.00280 * 68.44762 * 16 4 2 43 43 H 1.09001 * 109.47391 * 304.52609 * 17 16 4 44 44 H 1.09001 * 109.47219 * 64.53086 * 17 16 4 45 45 H 0.96998 * 119.99462 * 0.02562 * 20 18 17 46 46 H 0.97007 * 119.99705 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6194 -0.2502 2.1378 6 6 1.6137 -2.1897 1.2002 7 7 2.2017 -2.9071 2.3341 8 6 1.9613 -4.2232 2.4968 9 8 1.2585 -4.8138 1.7041 10 6 2.5657 -4.9611 3.6635 11 7 2.1576 -6.3673 3.6163 12 7 2.7946 -7.3106 3.0117 13 6 2.1291 -8.4251 3.1902 14 7 1.0600 -8.1244 3.9276 15 7 1.1081 -6.8597 4.1770 16 7 3.5059 -0.6381 1.2986 17 6 4.1048 -1.1680 0.0663 18 6 5.6060 -1.1695 0.1978 19 8 6.1259 -0.7689 1.2179 20 7 6.3711 -1.6168 -0.8177 21 6 7.7368 -1.6186 -0.6978 22 1 8.1996 -1.2612 0.2101 23 6 8.5255 -2.0793 -1.7449 24 7 7.9622 -2.5137 -2.8498 25 14 10.3864 -2.0812 -1.5818 26 1 10.7671 -1.5458 -0.2501 27 1 10.8941 -3.4697 -1.7214 28 1 10.9772 -1.2290 -2.6447 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 -0.0145 34 1 1.6648 1.9605 -0.8827 35 1 1.6884 1.9522 0.8971 36 1 0.5269 -2.2546 1.2532 37 1 1.9594 -2.6374 0.2683 38 1 2.7636 -2.4347 2.9682 39 1 3.6525 -4.8964 3.6107 40 1 2.2200 -4.5131 4.5952 41 1 2.3954 -9.4009 2.8115 42 1 3.8089 0.3090 1.4696 43 1 3.7536 -2.1864 -0.0996 44 1 3.8147 -0.5416 -0.7772 45 1 5.9553 -1.9375 -1.6333 46 1 8.5128 -2.8357 -3.5807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271839935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:28 Heat of formation + Delta-G solvation = 60.150840 kcal Electronic energy + Delta-G solvation = -29661.642283 eV Core-core repulsion = 25431.926336 eV Total energy + Delta-G solvation = -4229.715947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.43117 -40.18953 -38.96901 -37.66870 -35.12489 -34.58168 -34.05970 -33.18342 -32.92584 -31.26445 -30.24398 -28.45651 -27.47426 -26.14966 -24.41486 -24.06145 -23.54551 -22.41678 -20.92860 -20.14446 -19.09998 -18.19904 -18.08545 -17.86909 -16.97597 -16.43246 -16.20978 -15.86167 -15.56292 -15.25089 -14.91220 -14.60371 -14.38213 -14.12711 -13.98763 -13.91977 -13.64663 -13.51902 -13.15625 -12.79462 -12.52633 -12.35355 -12.24933 -12.10025 -11.91636 -11.64280 -11.53464 -11.29652 -11.24978 -11.07171 -11.05899 -11.01342 -10.76798 -10.74583 -10.38616 -10.27315 -10.07629 -9.56879 -9.26280 -8.59795 -8.18289 -8.01668 -6.46494 -3.87682 1.05685 1.60750 2.15319 2.22150 2.89500 3.12601 3.23757 3.30148 3.83941 3.92211 3.99543 4.19634 4.24530 4.33012 4.44216 4.52709 4.63547 4.75441 4.77249 4.96496 5.11133 5.18507 5.20645 5.38974 5.40983 5.46639 5.58106 5.60826 5.62900 5.65200 5.72917 5.78015 5.85898 5.89828 5.91847 6.06764 6.12562 6.17620 6.21090 7.00599 7.21541 7.45294 7.50459 7.86830 8.00715 8.24249 8.55115 9.12719 9.48777 9.99312 10.71087 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.007446 B = 0.003331 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3759.310768 B = 8403.927641 C =11410.874017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C -0.151 4.151 4 C 0.078 3.922 5 H 0.091 0.909 6 C 0.128 3.872 7 N -0.700 5.700 8 C 0.504 3.496 9 O -0.529 6.529 10 C 0.109 3.891 11 N -0.124 5.124 12 N -0.296 5.296 13 C 0.143 3.857 14 N -0.288 5.288 15 N -0.054 5.054 16 N -0.660 5.660 17 C 0.043 3.957 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.900 5.900 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.415 0.585 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.236 0.764 42 H 0.354 0.646 43 H 0.085 0.915 44 H 0.049 0.951 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.518 0.478 9.068 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.208 4.208 4 C -0.033 4.033 5 H 0.109 0.891 6 C 0.004 3.996 7 N -0.353 5.353 8 C 0.286 3.714 9 O -0.405 6.405 10 C -0.016 4.016 11 N -0.036 5.036 12 N -0.145 5.145 13 C -0.160 4.160 14 N -0.159 5.159 15 N -0.048 5.048 16 N -0.292 5.292 17 C -0.089 4.089 18 C 0.226 3.774 19 O -0.469 6.469 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.541 5.541 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.252 0.748 39 H 0.168 0.832 40 H 0.165 0.835 41 H 0.252 0.748 42 H 0.175 0.825 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.812 0.151 9.679 17.695 hybrid contribution 1.137 0.283 -1.406 1.831 sum -13.675 0.434 8.273 15.988 Atomic orbital electron populations 1.21860 0.94737 1.01974 1.01916 1.21812 0.96591 0.97100 0.99600 1.21865 1.01508 0.95371 1.02092 1.21944 0.89237 0.94014 0.98073 0.89062 1.21532 0.97788 0.90946 0.89348 1.45607 1.51808 1.08099 1.29786 1.20149 0.81802 0.83057 0.86424 1.90812 1.38004 1.67189 1.44539 1.22028 1.04575 0.73422 1.01567 1.49485 1.13987 1.09563 1.30528 1.74789 1.24700 0.97238 1.17775 1.27358 0.90318 0.99110 0.99205 1.75852 1.20306 1.03655 1.16074 1.78953 1.05859 1.04230 1.15720 1.60216 1.04221 1.28747 1.35999 1.21768 0.94838 1.00873 0.91450 1.19770 0.87594 0.84789 0.85264 1.90517 1.74287 1.52218 1.29876 1.41883 1.06843 1.55727 1.15439 1.19729 0.80883 1.39927 1.02427 0.87869 1.25272 1.00760 0.96858 0.95007 1.69620 1.36530 1.42638 1.05292 0.85813 0.82205 0.77904 0.78502 1.19206 1.20695 1.20759 0.92561 0.92601 0.92355 0.90358 0.92219 0.92301 0.92410 0.90723 0.91100 0.74837 0.83208 0.83500 0.74799 0.82470 0.89696 0.93301 0.77538 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.93 37.16 0.33 -0.79 16 2 C -0.13 -1.16 1.92 -90.62 -0.17 -1.33 16 3 C -0.15 -1.34 8.61 37.16 0.32 -1.02 16 4 C 0.08 0.72 2.28 -67.71 -0.15 0.57 16 5 H 0.09 0.72 8.14 -51.94 -0.42 0.29 16 6 C 0.13 1.32 4.41 -4.04 -0.02 1.30 16 7 N -0.70 -6.95 5.39 -60.29 -0.32 -7.28 16 8 C 0.50 5.93 7.90 -10.99 -0.09 5.84 16 9 O -0.53 -8.68 16.43 5.55 0.09 -8.59 16 10 C 0.11 0.96 7.08 -5.20 -0.04 0.93 16 11 N -0.12 -1.56 3.49 -11.72 -0.04 -1.60 16 12 N -0.30 -3.95 12.13 29.34 0.36 -3.60 16 13 C 0.14 1.66 13.26 -91.59 -1.21 0.44 16 14 N -0.29 -3.91 12.50 29.33 0.37 -3.54 16 15 N -0.05 -0.74 13.25 60.35 0.80 0.06 16 16 N -0.66 -8.23 5.21 -107.99 -0.56 -8.79 16 17 C 0.04 0.67 5.07 -4.98 -0.03 0.64 16 18 C 0.44 9.62 7.83 -10.98 -0.09 9.53 16 19 O -0.58 -14.60 15.88 5.54 0.09 -14.52 16 20 N -0.56 -13.70 5.29 -10.96 -0.06 -13.76 16 21 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.14 13.05 55.50 0.72 -23.42 16 25 Si 0.93 20.65 29.55 -169.99 -5.02 15.62 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 6.65 -51.93 -0.35 0.11 16 32 H 0.08 0.80 6.68 -51.93 -0.35 0.45 16 33 H 0.06 0.63 6.23 -51.93 -0.32 0.30 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.74 6.79 -51.93 -0.35 0.38 16 37 H 0.07 0.88 6.66 -51.93 -0.35 0.53 16 38 H 0.41 3.48 8.14 -40.82 -0.33 3.15 16 39 H 0.15 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.15 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.24 1.59 8.06 -52.48 -0.42 1.17 16 42 H 0.35 4.63 7.18 -39.30 -0.28 4.35 16 43 H 0.08 1.31 6.32 -51.93 -0.33 0.98 16 44 H 0.05 0.70 6.05 -51.93 -0.31 0.39 16 45 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 46 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -35.82 385.08 -5.35 -41.17 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -6.19 Total: 14.07 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -1.38 Total: 8.36 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: 1.26 Total: -61.92 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.18 Total: -23.10 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.82 -5.35 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271839935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.318 kcal (2) G-P(sol) polarization free energy of solvation -35.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds