Wall clock time and date at job start Tue Mar 31 2020 22:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29021 * 124.91577 * 2 1 4 4 C 1.31787 * 117.12723 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75233 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46866 * 305.02631 * 5 4 3 7 7 C 1.52999 * 109.46623 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46953 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99692 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00146 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99875 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47037 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.47073 * 64.99672 * 12 11 10 14 14 N 1.46503 * 109.46922 * 304.99345 * 12 11 10 15 15 C 1.36939 * 119.99701 * 154.99859 * 14 12 11 16 16 H 1.07989 * 120.00103 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99554 * 180.02562 * 15 14 12 18 18 N 1.31619 * 120.00178 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99755 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47147 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46814 * 120.00262 * 19 17 15 22 22 H 1.48504 * 109.47390 * 240.00284 * 19 17 15 23 23 C 1.53004 * 109.46954 * 184.99963 * 12 11 10 24 24 C 1.53002 * 109.46983 * 179.97438 * 23 12 11 25 25 C 1.52999 * 109.46851 * 299.99512 * 23 12 11 26 26 C 1.33639 * 114.49738 * 0.23162 * 4 3 2 27 27 S 1.70979 * 124.91810 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46911 * 90.00130 * 1 2 3 29 29 H 1.09004 * 109.47467 * 210.00086 * 1 2 3 30 30 H 1.09000 * 109.47576 * 330.00327 * 1 2 3 31 31 H 1.08993 * 109.47512 * 185.02753 * 5 4 3 32 32 H 1.09000 * 109.47247 * 65.02462 * 5 4 3 33 33 H 1.09000 * 109.47050 * 299.99952 * 6 5 4 34 34 H 1.09001 * 109.46801 * 60.00064 * 6 5 4 35 35 H 1.09000 * 109.47486 * 299.99829 * 7 6 5 36 36 H 1.09001 * 109.47362 * 60.00551 * 7 6 5 37 37 H 0.96999 * 120.00043 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.46876 * 299.99570 * 11 10 8 39 39 H 1.08996 * 109.47565 * 59.99371 * 11 10 8 40 40 H 0.96999 * 119.99735 * 335.00804 * 14 12 11 41 41 H 0.97003 * 120.00141 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.47468 * 59.99951 * 23 12 11 43 43 H 1.09009 * 109.47011 * 59.99965 * 24 23 12 44 44 H 1.08990 * 109.47081 * 179.97438 * 24 23 12 45 45 H 1.08998 * 109.47000 * 300.00410 * 24 23 12 46 46 H 1.09001 * 109.46954 * 60.00440 * 25 23 12 47 47 H 1.09000 * 109.46961 * 180.02562 * 25 23 12 48 48 H 1.09000 * 109.47083 * 300.00139 * 25 23 12 49 49 H 1.08002 * 126.03735 * 179.76609 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2333 2.9495 -1.1820 7 6 5.2274 4.1125 -1.1821 8 6 4.9350 5.0232 -2.3467 9 8 4.0211 4.7674 -3.1019 10 7 5.6890 6.1219 -2.5490 11 6 5.4043 7.0074 -3.6808 12 6 6.3985 8.1704 -3.6810 13 1 7.4038 7.7889 -3.8591 14 7 6.3563 8.8491 -2.3834 15 6 7.4462 9.5508 -1.9420 16 1 8.3367 9.6043 -2.5507 17 6 7.4064 10.1935 -0.7122 18 7 6.3213 10.1279 0.0298 19 14 8.8935 11.1501 -0.1098 20 1 9.9771 11.0697 -1.1220 21 1 8.5164 12.5712 0.0991 22 1 9.3689 10.5705 1.1721 23 6 6.0252 9.1601 -4.7865 24 6 7.0190 10.3235 -4.7864 25 6 6.0692 8.4513 -6.1417 26 6 3.9354 -0.4006 -0.0039 27 16 2.4857 -1.4020 0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 5.5448 1.6353 -0.0894 32 1 4.4369 2.5834 0.9312 33 1 4.3272 2.3907 -2.1132 34 1 3.2192 3.3388 -1.0925 35 1 5.1332 4.6712 -0.2509 36 1 6.2418 3.7235 -1.2714 37 1 6.4196 6.3266 -1.9448 38 1 5.4982 6.4485 -4.6119 39 1 4.3902 7.3967 -3.5915 40 1 5.5563 8.8012 -1.8368 41 1 6.2936 10.5766 0.8893 42 1 5.0198 9.5416 -4.6085 43 1 8.0246 9.9423 -4.9642 44 1 6.7534 11.0283 -5.5741 45 1 6.9873 10.8282 -3.8208 46 1 5.3610 7.6228 -6.1416 47 1 5.8038 9.1565 -6.9293 48 1 7.0747 8.0699 -6.3198 49 1 4.9546 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271840542.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:31 Heat of formation + Delta-G solvation = -12.903763 kcal Electronic energy + Delta-G solvation = -26520.130062 eV Core-core repulsion = 22801.246693 eV Total energy + Delta-G solvation = -3718.883369 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.18554 -39.33345 -37.25877 -34.85268 -33.74437 -33.12109 -32.31133 -30.42236 -29.18710 -28.29745 -27.19391 -26.05846 -24.00723 -23.22732 -22.13016 -21.34806 -20.00436 -19.88730 -19.17281 -17.80008 -17.30730 -16.43329 -15.78568 -15.74162 -15.34342 -15.24292 -15.00842 -14.20092 -14.13324 -13.94173 -13.65861 -13.53173 -13.35406 -13.24684 -13.02227 -12.75604 -12.45864 -12.38914 -12.24788 -12.01688 -11.80469 -11.62012 -11.45133 -11.23904 -11.02979 -10.95848 -10.83199 -10.67758 -10.62520 -10.28960 -10.08587 -9.93911 -9.82525 -9.63454 -9.55838 -9.43151 -8.93070 -8.89061 -8.53026 -7.03268 -5.82781 -3.11870 0.47950 1.12217 1.48998 2.58293 3.05435 3.37980 3.44771 3.46669 3.66612 3.83223 4.52912 4.64297 4.80919 4.96520 4.99883 5.03032 5.12562 5.19665 5.31546 5.35354 5.39460 5.48153 5.54703 5.57259 5.64073 5.65101 5.67052 5.73964 5.78148 5.94057 6.01075 6.03960 6.20361 6.21619 6.26206 6.38508 6.42503 6.47835 6.55311 6.64350 6.70746 6.99676 7.08758 7.29729 7.56600 7.66287 8.02945 8.34532 8.67609 9.46568 10.01837 10.37877 11.39028 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014153 B = 0.002014 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.963398 B =13901.558269 C =15144.281148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.053 3.947 3 N -0.465 5.465 4 C 0.080 3.920 5 C -0.047 4.047 6 C -0.092 4.092 7 C -0.141 4.141 8 C 0.509 3.491 9 O -0.557 6.557 10 N -0.714 5.714 11 C 0.114 3.886 12 C 0.170 3.830 13 H 0.053 0.947 14 N -0.721 5.721 15 C -0.235 4.235 16 H 0.073 0.927 17 C -0.012 4.012 18 N -0.929 5.929 19 Si 0.902 3.098 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.110 4.110 24 C -0.139 4.139 25 C -0.149 4.149 26 C -0.263 4.263 27 S 0.099 5.901 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.410 0.590 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.062 0.938 43 H 0.040 0.960 44 H 0.031 0.969 45 H 0.086 0.914 46 H 0.051 0.949 47 H 0.045 0.955 48 H 0.049 0.951 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.667 -21.480 -1.511 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.226 4.226 3 N -0.180 5.180 4 C -0.051 4.051 5 C -0.087 4.087 6 C -0.131 4.131 7 C -0.182 4.182 8 C 0.295 3.705 9 O -0.436 6.436 10 N -0.366 5.366 11 C -0.011 4.011 12 C 0.059 3.941 13 H 0.071 0.929 14 N -0.363 5.363 15 C -0.366 4.366 16 H 0.091 0.909 17 C -0.208 4.208 18 N -0.577 5.577 19 Si 0.733 3.267 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.132 4.132 24 C -0.196 4.196 25 C -0.207 4.207 26 C -0.402 4.402 27 S 0.353 5.647 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.246 0.754 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.050 0.950 45 H 0.105 0.895 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.602 -22.147 -2.002 23.197 hybrid contribution 1.585 1.450 0.823 2.301 sum -5.017 -20.697 -1.179 21.329 Atomic orbital electron populations 1.20463 0.85156 1.04224 1.04052 1.27089 1.01833 0.90751 1.02900 1.66088 1.04626 1.31396 1.15863 1.20329 0.90179 0.94262 1.00333 1.20287 0.95338 0.92683 1.00410 1.21201 1.00113 0.94529 0.97242 1.21669 1.01320 0.96922 0.98249 1.20605 0.81940 0.81663 0.86265 1.90660 1.31028 1.73910 1.47970 1.46025 1.35162 1.24477 1.30895 1.21700 0.99836 0.91167 0.88387 1.20545 0.96163 0.89814 0.87530 0.92940 1.42472 1.16821 1.60511 1.16458 1.19240 0.93165 1.23973 1.00244 0.90884 1.24735 0.97251 1.01366 0.97462 1.69672 1.27034 1.48067 1.12894 0.86202 0.82247 0.79740 0.78500 1.20572 1.21965 1.21952 1.21732 0.99908 0.97225 0.94286 1.21819 0.97624 0.97435 1.02747 1.21938 1.01096 1.00079 0.97547 1.26806 1.02979 0.95667 1.14728 1.83905 0.98385 1.13255 1.69134 0.89453 0.90163 0.89096 0.90125 0.89774 0.91564 0.90238 0.88559 0.89162 0.75410 0.91798 0.92084 0.78089 0.93549 0.91918 0.94088 0.95019 0.89514 0.93042 0.93590 0.93226 0.80626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.46 36.01 0.38 -0.15 16 2 C 0.05 0.53 7.39 -13.46 -0.10 0.43 16 3 N -0.46 -5.85 10.34 -8.06 -0.08 -5.93 16 4 C 0.08 0.91 6.08 -84.22 -0.51 0.40 16 5 C -0.05 -0.48 5.71 -27.88 -0.16 -0.64 16 6 C -0.09 -1.17 4.40 -26.73 -0.12 -1.28 16 7 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 8 C 0.51 8.42 7.83 -10.98 -0.09 8.34 16 9 O -0.56 -11.07 15.98 5.56 0.09 -10.98 16 10 N -0.71 -11.88 5.39 -60.30 -0.32 -12.21 16 11 C 0.11 1.96 4.73 -4.04 -0.02 1.94 16 12 C 0.17 3.13 2.18 -67.93 -0.15 2.98 16 13 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 14 N -0.72 -16.26 4.44 -53.42 -0.24 -16.49 16 15 C -0.24 -5.89 7.57 -15.06 -0.11 -6.00 16 16 H 0.07 1.80 7.39 -52.49 -0.39 1.41 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 18 N -0.93 -26.52 13.06 55.49 0.72 -25.79 16 19 Si 0.90 21.33 29.55 -169.99 -5.02 16.31 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 C -0.11 -1.89 2.69 -90.62 -0.24 -2.13 16 24 C -0.14 -2.50 8.26 37.16 0.31 -2.20 16 25 C -0.15 -2.12 8.84 37.16 0.33 -1.80 16 26 C -0.26 -2.45 11.07 29.12 0.32 -2.13 16 27 S 0.10 0.82 23.18 -107.50 -2.49 -1.67 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 34 H 0.08 1.20 8.03 -51.93 -0.42 0.78 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.41 6.79 8.14 -40.82 -0.33 6.46 16 38 H 0.06 1.05 6.71 -51.93 -0.35 0.70 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.39 9.58 7.80 -40.82 -0.32 9.26 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.09 1.85 6.01 -51.93 -0.31 1.54 16 46 H 0.05 0.71 6.54 -51.93 -0.34 0.37 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 410.58 15.07 6.19 6.19 Total: -1.00 -31.09 410.58 -9.92 -41.02 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -8.34 Total: 14.13 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -0.42 Total: -4.57 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.08 Total: -60.42 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.49 Total: -1.67 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.09 -9.92 -41.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271840542.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.112 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds