Wall clock time and date at job start Tue Mar 31 2020 22:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29021 * 124.91577 * 2 1 4 4 C 1.31787 * 117.12723 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75233 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46866 * 305.02631 * 5 4 3 7 7 C 1.52999 * 109.46623 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46953 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99692 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00146 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99875 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47037 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.47073 * 64.99672 * 12 11 10 14 14 N 1.46503 * 109.46922 * 304.99345 * 12 11 10 15 15 C 1.36939 * 119.99701 * 154.99859 * 14 12 11 16 16 H 1.07989 * 120.00103 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99554 * 180.02562 * 15 14 12 18 18 N 1.31619 * 120.00178 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99755 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47147 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46814 * 120.00262 * 19 17 15 22 22 H 1.48504 * 109.47390 * 240.00284 * 19 17 15 23 23 C 1.53004 * 109.46954 * 184.99963 * 12 11 10 24 24 C 1.53002 * 109.46983 * 179.97438 * 23 12 11 25 25 C 1.52999 * 109.46851 * 299.99512 * 23 12 11 26 26 C 1.33639 * 114.49738 * 0.23162 * 4 3 2 27 27 S 1.70979 * 124.91810 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46911 * 90.00130 * 1 2 3 29 29 H 1.09004 * 109.47467 * 210.00086 * 1 2 3 30 30 H 1.09000 * 109.47576 * 330.00327 * 1 2 3 31 31 H 1.08993 * 109.47512 * 185.02753 * 5 4 3 32 32 H 1.09000 * 109.47247 * 65.02462 * 5 4 3 33 33 H 1.09000 * 109.47050 * 299.99952 * 6 5 4 34 34 H 1.09001 * 109.46801 * 60.00064 * 6 5 4 35 35 H 1.09000 * 109.47486 * 299.99829 * 7 6 5 36 36 H 1.09001 * 109.47362 * 60.00551 * 7 6 5 37 37 H 0.96999 * 120.00043 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.46876 * 299.99570 * 11 10 8 39 39 H 1.08996 * 109.47565 * 59.99371 * 11 10 8 40 40 H 0.96999 * 119.99735 * 335.00804 * 14 12 11 41 41 H 0.97003 * 120.00141 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.47468 * 59.99951 * 23 12 11 43 43 H 1.09009 * 109.47011 * 59.99965 * 24 23 12 44 44 H 1.08990 * 109.47081 * 179.97438 * 24 23 12 45 45 H 1.08998 * 109.47000 * 300.00410 * 24 23 12 46 46 H 1.09001 * 109.46954 * 60.00440 * 25 23 12 47 47 H 1.09000 * 109.46961 * 180.02562 * 25 23 12 48 48 H 1.09000 * 109.47083 * 300.00139 * 25 23 12 49 49 H 1.08002 * 126.03735 * 179.76609 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2333 2.9495 -1.1820 7 6 5.2274 4.1125 -1.1821 8 6 4.9350 5.0232 -2.3467 9 8 4.0211 4.7674 -3.1019 10 7 5.6890 6.1219 -2.5490 11 6 5.4043 7.0074 -3.6808 12 6 6.3985 8.1704 -3.6810 13 1 7.4038 7.7889 -3.8591 14 7 6.3563 8.8491 -2.3834 15 6 7.4462 9.5508 -1.9420 16 1 8.3367 9.6043 -2.5507 17 6 7.4064 10.1935 -0.7122 18 7 6.3213 10.1279 0.0298 19 14 8.8935 11.1501 -0.1098 20 1 9.9771 11.0697 -1.1220 21 1 8.5164 12.5712 0.0991 22 1 9.3689 10.5705 1.1721 23 6 6.0252 9.1601 -4.7865 24 6 7.0190 10.3235 -4.7864 25 6 6.0692 8.4513 -6.1417 26 6 3.9354 -0.4006 -0.0039 27 16 2.4857 -1.4020 0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 5.5448 1.6353 -0.0894 32 1 4.4369 2.5834 0.9312 33 1 4.3272 2.3907 -2.1132 34 1 3.2192 3.3388 -1.0925 35 1 5.1332 4.6712 -0.2509 36 1 6.2418 3.7235 -1.2714 37 1 6.4196 6.3266 -1.9448 38 1 5.4982 6.4485 -4.6119 39 1 4.3902 7.3967 -3.5915 40 1 5.5563 8.8012 -1.8368 41 1 6.2936 10.5766 0.8893 42 1 5.0198 9.5416 -4.6085 43 1 8.0246 9.9423 -4.9642 44 1 6.7534 11.0283 -5.5741 45 1 6.9873 10.8282 -3.8208 46 1 5.3610 7.6228 -6.1416 47 1 5.8038 9.1565 -6.9293 48 1 7.0747 8.0699 -6.3198 49 1 4.9546 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271840542.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:30 Heat of formation + Delta-G solvation = -32.493874 kcal Electronic energy + Delta-G solvation = -26520.979553 eV Core-core repulsion = 22801.246693 eV Total energy + Delta-G solvation = -3719.732860 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.00245 -40.63851 -38.77821 -35.79049 -35.19754 -34.90330 -33.08593 -32.16347 -30.24756 -29.34682 -28.26342 -27.42568 -25.63199 -24.32264 -23.32010 -22.50947 -21.33462 -20.68568 -20.56807 -19.18298 -18.54908 -17.72351 -17.12279 -16.95798 -16.64953 -16.21802 -15.99903 -15.72394 -15.28524 -15.25011 -14.96477 -14.83675 -14.56690 -14.28837 -14.00758 -13.83337 -13.66540 -13.42543 -13.22130 -13.03240 -12.92085 -12.87168 -12.80536 -12.67171 -12.42370 -12.39656 -12.26607 -12.07936 -11.96068 -11.75155 -11.64682 -11.44451 -11.28119 -10.92538 -10.73555 -10.55388 -10.34551 -9.95129 -9.58972 -8.94757 -7.86265 -5.13425 -0.22217 0.46266 0.78733 1.49824 1.52481 1.59972 1.72784 1.80995 2.38112 2.60818 3.19395 3.46914 3.82731 3.86300 3.90093 3.95405 4.03391 4.17379 4.30057 4.32456 4.37640 4.45805 4.47913 4.52420 4.60488 4.64467 4.66969 4.73335 4.79529 4.81534 4.84142 4.92930 4.99043 5.04415 5.08224 5.15656 5.25006 5.26107 5.27408 5.34063 5.42669 5.57775 5.63575 5.65763 5.77750 6.33750 6.67344 6.85712 7.33477 7.41660 8.12865 8.38326 9.36761 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014153 B = 0.002014 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.963398 B =13901.558269 C =15144.281148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.032 3.968 3 N -0.508 5.508 4 C 0.051 3.949 5 C -0.041 4.041 6 C -0.081 4.081 7 C -0.133 4.133 8 C 0.504 3.496 9 O -0.594 6.594 10 N -0.713 5.713 11 C 0.122 3.878 12 C 0.173 3.827 13 H 0.058 0.942 14 N -0.727 5.727 15 C -0.211 4.211 16 H 0.080 0.920 17 C -0.074 4.074 18 N -0.968 5.968 19 Si 0.958 3.042 20 H -0.266 1.266 21 H -0.304 1.304 22 H -0.298 1.298 23 C -0.108 4.108 24 C -0.134 4.134 25 C -0.140 4.140 26 C -0.264 4.264 27 S 0.143 5.857 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.411 0.589 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.372 0.628 41 H 0.246 0.754 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.148 -23.302 -2.450 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.245 4.245 3 N -0.224 5.224 4 C -0.080 4.080 5 C -0.081 4.081 6 C -0.120 4.120 7 C -0.172 4.172 8 C 0.293 3.707 9 O -0.475 6.475 10 N -0.364 5.364 11 C -0.003 4.003 12 C 0.064 3.936 13 H 0.076 0.924 14 N -0.367 5.367 15 C -0.343 4.343 16 H 0.098 0.902 17 C -0.266 4.266 18 N -0.619 5.619 19 Si 0.789 3.211 20 H -0.190 1.190 21 H -0.232 1.232 22 H -0.225 1.225 23 C -0.129 4.129 24 C -0.191 4.191 25 C -0.198 4.198 26 C -0.403 4.403 27 S 0.397 5.603 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.141 0.859 37 H 0.248 0.752 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.204 0.796 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -5.055 -23.988 -2.986 24.696 hybrid contribution 1.066 1.939 1.003 2.430 sum -3.989 -22.048 -1.983 22.494 Atomic orbital electron populations 1.20598 0.83489 1.05127 1.04760 1.27611 1.03210 0.91239 1.02458 1.66107 1.05653 1.33184 1.17487 1.20531 0.90142 0.95342 1.02009 1.20263 0.96700 0.92144 0.98946 1.21035 0.98271 0.94759 0.97915 1.21696 1.02975 0.96057 0.96490 1.21322 0.81005 0.81677 0.86743 1.90642 1.32538 1.74768 1.49596 1.46046 1.35197 1.24433 1.30715 1.21568 0.98375 0.90976 0.89364 1.20676 0.96740 0.90086 0.86061 0.92360 1.42587 1.15666 1.60562 1.17851 1.19505 0.93516 1.21897 0.99403 0.90202 1.25368 0.99402 1.03455 0.98339 1.69816 1.28956 1.50005 1.13138 0.85284 0.80094 0.77731 0.77947 1.19019 1.23205 1.22530 1.21638 0.98819 0.96837 0.95630 1.21728 0.98303 0.97790 1.01315 1.21844 1.02023 1.00240 0.95681 1.27174 1.04663 0.95311 1.13125 1.83687 0.97102 1.11573 1.67913 0.88748 0.87688 0.89773 0.87280 0.89866 0.92818 0.93612 0.87771 0.85873 0.75207 0.90387 0.93951 0.79646 0.94474 0.93402 0.93341 0.93096 0.93194 0.92534 0.92114 0.92095 0.78166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.46 71.24 0.75 -0.28 16 2 C 0.03 0.64 7.39 88.52 0.65 1.29 16 3 N -0.51 -12.98 10.34 -179.40 -1.86 -14.84 16 4 C 0.05 1.13 6.08 41.52 0.25 1.38 16 5 C -0.04 -0.80 5.71 29.85 0.17 -0.63 16 6 C -0.08 -2.05 4.40 30.60 0.13 -1.92 16 7 C -0.13 -3.18 5.70 29.85 0.17 -3.01 16 8 C 0.50 16.61 7.83 87.66 0.69 17.30 16 9 O -0.59 -24.00 15.98 -3.03 -0.05 -24.05 16 10 N -0.71 -23.40 5.39 -463.06 -2.49 -25.89 16 11 C 0.12 4.15 4.73 86.38 0.41 4.56 16 12 C 0.17 6.21 2.18 44.99 0.10 6.31 16 13 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 14 N -0.73 -32.80 4.44 -322.93 -1.43 -34.23 16 15 C -0.21 -10.49 7.57 84.03 0.64 -9.86 16 16 H 0.08 3.82 7.39 -2.92 -0.02 3.80 16 17 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 18 N -0.97 -56.46 13.06 21.65 0.28 -56.18 16 19 Si 0.96 44.12 29.55 68.60 2.03 46.15 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 22 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 23 C -0.11 -3.56 2.69 -10.79 -0.03 -3.59 16 24 C -0.13 -4.62 8.26 71.98 0.59 -4.02 16 25 C -0.14 -3.62 8.84 71.98 0.64 -2.98 16 26 C -0.26 -4.46 11.07 66.78 0.74 -3.72 16 27 S 0.14 2.13 23.18 -56.49 -1.31 0.82 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.11 1.45 8.03 -2.39 -0.02 1.44 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 34 H 0.04 1.45 8.03 -2.39 -0.02 1.43 16 35 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.41 13.32 8.14 -92.71 -0.75 12.57 16 38 H 0.08 2.46 6.71 -2.39 -0.02 2.44 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.37 18.85 7.80 -92.71 -0.72 18.13 16 41 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 42 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.05 2.09 6.01 -2.39 -0.01 2.07 16 46 H 0.06 1.41 6.54 -2.39 -0.02 1.40 16 47 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.20 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -68.88 410.58 1.00 -67.88 By element: Atomic # 1 Polarization: 43.53 SS G_CDS: -0.53 Total: 43.00 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 6.36 Total: -2.66 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -5.50 Total: -131.14 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.05 Total: -24.05 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.31 Total: 0.82 kcal Total: -68.88 1.00 -67.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271840542.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.383 kcal (2) G-P(sol) polarization free energy of solvation -68.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds