Wall clock time and date at job start Tue Mar 31 2020 22:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 C 1.53002 * 109.46838 * 269.99555 * 6 5 4 8 8 C 1.50703 * 109.47140 * 179.97438 * 7 6 5 9 9 O 1.21288 * 119.99760 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99928 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00351 * 0.02562 * 10 8 7 12 12 C 1.46503 * 120.00040 * 180.02562 * 10 8 7 13 13 C 1.52999 * 109.47382 * 89.99948 * 12 10 8 14 14 C 1.53005 * 109.47107 * 300.00050 * 13 12 10 15 15 C 1.52995 * 109.46947 * 60.00296 * 13 12 10 16 16 C 1.53004 * 109.47275 * 180.02562 * 13 12 10 17 17 N 1.46491 * 109.47147 * 179.97438 * 16 13 12 18 18 C 1.36937 * 120.00335 * 179.97438 * 17 16 13 19 19 H 1.08003 * 119.99333 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00482 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99757 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00093 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47031 * 90.00509 * 22 20 18 24 24 H 1.48497 * 109.47055 * 210.00313 * 22 20 18 25 25 H 1.48498 * 109.47095 * 330.00394 * 22 20 18 26 26 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 27 27 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 30 30 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 31 31 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 32 32 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 33 33 H 1.09000 * 109.47428 * 300.00004 * 7 6 5 34 34 H 1.09004 * 109.47230 * 59.99848 * 7 6 5 35 35 H 1.08995 * 109.47329 * 89.99566 * 11 10 8 36 36 H 1.09001 * 109.47140 * 209.99805 * 11 10 8 37 37 H 1.09000 * 109.47270 * 329.99852 * 11 10 8 38 38 H 1.08997 * 109.47334 * 210.00488 * 12 10 8 39 39 H 1.09011 * 109.46707 * 330.00026 * 12 10 8 40 40 H 1.09006 * 109.46818 * 60.00219 * 14 13 12 41 41 H 1.08998 * 109.46631 * 179.97438 * 14 13 12 42 42 H 1.08999 * 109.47180 * 300.00448 * 14 13 12 43 43 H 1.08995 * 109.47324 * 59.99674 * 15 13 12 44 44 H 1.09000 * 109.47129 * 180.02562 * 15 13 12 45 45 H 1.09006 * 109.47340 * 300.00003 * 15 13 12 46 46 H 1.09004 * 109.46546 * 299.99938 * 16 13 12 47 47 H 1.08999 * 109.46927 * 59.99604 * 16 13 12 48 48 H 0.97010 * 120.00146 * 0.02562 * 17 16 13 49 49 H 0.96997 * 119.99627 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5074 -1.4589 8 6 5.7934 -3.6522 -1.4659 9 8 6.1886 -4.1184 -0.4183 10 7 6.2297 -4.1586 -2.6361 11 6 5.7518 -3.5959 -3.9015 12 6 7.1819 -5.2719 -2.6429 13 6 6.4173 -6.5971 -2.6482 14 6 5.5395 -6.6845 -1.3981 15 6 5.5360 -6.6723 -3.8966 16 6 7.4118 -7.7598 -2.6546 17 7 6.6797 -9.0287 -2.6591 18 6 7.3646 -10.2144 -2.6658 19 1 8.4446 -10.2141 -2.6673 20 6 6.6709 -11.4167 -2.6695 21 7 5.3546 -11.4170 -2.6672 22 14 7.6053 -13.0342 -2.6778 23 1 7.8552 -13.4686 -1.2800 24 1 6.8018 -14.0664 -3.3807 25 1 8.9015 -12.8534 -3.3793 26 7 2.2199 -1.1083 -0.0064 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3633 -0.8874 -0.5184 29 1 -0.3633 0.8926 -0.5093 30 1 1.8392 2.1308 0.0005 31 1 5.3966 -1.8274 0.5002 32 1 4.0439 -2.9843 0.4958 33 1 3.9003 -2.8071 -1.9733 34 1 5.2530 -1.6502 -1.9690 35 1 6.4142 -2.7883 -4.2131 36 1 5.7432 -4.3739 -4.6649 37 1 4.7425 -3.2068 -3.7679 38 1 7.8074 -5.2097 -3.5334 39 1 7.8099 -5.2183 -1.7534 40 1 4.8309 -5.8561 -1.3931 41 1 4.9944 -7.6284 -1.4022 42 1 6.1673 -6.6308 -0.5087 43 1 6.1614 -6.6101 -4.7871 44 1 4.9909 -7.6162 -3.9002 45 1 4.8274 -5.8440 -3.8916 46 1 8.0375 -7.6977 -3.5451 47 1 8.0394 -7.7060 -1.7651 48 1 5.7096 -9.0289 -2.6582 49 1 4.8699 -12.2572 -2.6694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275691617.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:52 Heat of formation + Delta-G solvation = 11.192056 kcal Electronic energy + Delta-G solvation = -27236.982979 eV Core-core repulsion = 23519.144483 eV Total energy + Delta-G solvation = -3717.838496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43267 -40.03578 -37.41747 -35.09002 -34.48826 -33.04099 -31.39200 -30.15362 -28.11156 -27.88812 -27.18006 -26.30586 -25.65305 -24.74378 -22.71711 -22.00903 -20.04315 -19.27738 -18.33805 -18.02055 -17.20377 -17.04161 -16.23553 -15.95884 -15.43058 -15.18409 -14.69383 -14.52485 -14.10978 -13.80343 -13.72329 -13.49729 -13.33652 -13.14184 -13.02079 -12.81671 -12.77911 -12.62744 -12.48575 -12.24343 -12.21958 -11.93187 -11.65520 -11.43005 -11.19687 -11.06453 -10.93223 -10.77684 -10.66513 -10.24091 -10.18987 -9.96772 -9.93689 -9.75831 -9.66110 -9.59915 -9.02401 -8.80666 -8.52980 -6.83193 -5.70278 -2.97601 0.34873 1.02316 1.40786 2.42393 2.62955 2.99248 3.47703 3.52578 3.54158 3.70372 4.34130 4.64716 4.65742 4.72136 4.75753 4.82262 4.90363 5.00231 5.15971 5.17434 5.22486 5.25424 5.31113 5.36639 5.43004 5.47161 5.56805 5.62212 5.65344 5.75313 5.78280 5.91944 5.97282 6.01173 6.16662 6.20337 6.34541 6.48028 6.58484 6.66716 6.79260 6.83448 7.00100 7.04661 7.37421 7.43691 7.75991 8.18857 8.49380 9.60310 10.20008 10.54707 11.52900 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.002007 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.974814 B =13947.735226 C =14456.392771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.069 3.931 3 C -0.269 4.269 4 S 0.115 5.885 5 C 0.061 3.939 6 C -0.030 4.030 7 C -0.132 4.132 8 C 0.514 3.486 9 O -0.529 6.529 10 N -0.608 5.608 11 C 0.071 3.929 12 C 0.127 3.873 13 C -0.086 4.086 14 C -0.122 4.122 15 C -0.136 4.136 16 C 0.165 3.835 17 N -0.728 5.728 18 C -0.235 4.235 19 H 0.069 0.931 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.906 3.094 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 N -0.469 5.469 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.176 0.824 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.045 0.955 46 H 0.017 0.983 47 H 0.019 0.981 48 H 0.385 0.615 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.662 30.485 0.628 31.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.407 4.407 4 S 0.371 5.629 5 C -0.217 4.217 6 C -0.071 4.071 7 C -0.174 4.174 8 C 0.302 3.698 9 O -0.406 6.406 10 N -0.341 5.341 11 C -0.072 4.072 12 C 0.005 3.995 13 C -0.087 4.087 14 C -0.180 4.180 15 C -0.193 4.193 16 C 0.037 3.963 17 N -0.373 5.373 18 C -0.367 4.367 19 H 0.087 0.913 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 N -0.184 5.184 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.193 0.807 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.034 0.966 47 H 0.037 0.963 48 H 0.220 0.780 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.581 30.152 1.179 30.521 hybrid contribution -0.840 -0.850 -0.172 1.207 sum -5.422 29.302 1.007 29.816 Atomic orbital electron populations 1.20380 0.87048 1.03441 1.03078 1.20366 0.98374 0.86482 1.01065 1.26803 0.95127 1.03948 1.14868 1.84042 1.07425 1.03283 1.68189 1.27091 0.94020 0.98205 1.02392 1.20030 0.95883 0.94164 0.97039 1.21659 1.00032 0.97947 0.97762 1.20345 0.81962 0.83862 0.83668 1.90744 1.57740 1.61066 1.31029 1.47759 1.45840 1.34696 1.05833 1.21969 0.99442 0.99410 0.86423 1.21565 0.90521 0.84555 1.02907 1.21106 0.96853 0.94287 0.96453 1.21709 0.98940 1.00741 0.96571 1.21886 0.99104 1.01938 0.96401 1.20584 0.92714 0.85430 0.97579 1.42391 1.05906 0.99729 1.89256 1.19241 0.91014 0.84259 1.42138 0.91289 1.24722 0.95517 0.97609 1.03334 1.69661 1.05075 1.25502 1.58128 0.86191 0.78591 0.83959 0.77474 1.21807 1.21874 1.20849 1.66160 1.04529 1.31561 1.16156 0.90562 0.90386 0.90735 0.80711 0.88651 0.87620 0.88267 0.88924 0.92744 0.90021 0.91266 0.90680 0.89762 0.94370 0.92233 0.92519 0.93285 0.91489 0.93608 0.96550 0.96303 0.77999 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.31 36.01 0.37 -0.15 16 2 C 0.07 0.63 6.74 -84.22 -0.57 0.06 16 3 C -0.27 -2.01 11.13 29.12 0.32 -1.69 16 4 S 0.12 0.88 23.18 -107.50 -2.49 -1.61 16 5 C 0.06 0.60 6.64 -13.46 -0.09 0.51 16 6 C -0.03 -0.29 5.09 -27.88 -0.14 -0.43 16 7 C -0.13 -1.19 4.23 -27.88 -0.12 -1.31 16 8 C 0.51 6.34 6.08 -10.99 -0.07 6.27 16 9 O -0.53 -8.44 13.75 5.55 0.08 -8.37 16 10 N -0.61 -6.96 2.40 -181.57 -0.44 -7.39 16 11 C 0.07 0.56 9.15 59.85 0.55 1.11 16 12 C 0.13 1.73 4.60 -4.04 -0.02 1.71 16 13 C -0.09 -1.43 0.60 -154.51 -0.09 -1.52 16 14 C -0.12 -2.25 6.96 37.16 0.26 -1.99 16 15 C -0.14 -2.15 7.05 37.16 0.26 -1.88 16 16 C 0.17 3.42 5.15 -4.04 -0.02 3.39 16 17 N -0.73 -18.75 5.00 -59.91 -0.30 -19.05 16 18 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 19 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 21 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 22 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 N -0.47 -5.25 10.53 -8.06 -0.08 -5.34 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.33 8.12 -51.93 -0.42 -0.10 16 30 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.11 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.10 0.87 7.40 -51.93 -0.38 0.48 16 34 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.67 6.05 -51.93 -0.31 0.36 16 37 H 0.07 0.46 6.44 -51.93 -0.33 0.12 16 38 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 39 H 0.08 1.26 7.42 -51.92 -0.39 0.88 16 40 H 0.04 0.65 6.15 -51.93 -0.32 0.33 16 41 H 0.06 1.25 6.86 -51.93 -0.36 0.89 16 42 H 0.06 1.12 7.73 -51.93 -0.40 0.71 16 43 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 44 H 0.07 1.27 6.86 -51.93 -0.36 0.92 16 45 H 0.04 0.61 5.99 -51.93 -0.31 0.30 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.38 10.40 5.36 -40.82 -0.22 10.18 16 49 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 397.77 15.07 5.99 5.99 Total: -1.00 -34.25 397.77 -9.13 -43.38 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -7.99 Total: 5.94 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 0.40 Total: -3.36 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.10 Total: -59.84 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.08 Total: -8.37 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.49 Total: -1.61 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.25 -9.13 -43.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275691617.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.568 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds