Wall clock time and date at job start Tue Mar 31 2020 22:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 C 1.53002 * 109.46838 * 269.99555 * 6 5 4 8 8 C 1.50703 * 109.47140 * 179.97438 * 7 6 5 9 9 O 1.21288 * 119.99760 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99928 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00351 * 0.02562 * 10 8 7 12 12 C 1.46503 * 120.00040 * 180.02562 * 10 8 7 13 13 C 1.52999 * 109.47382 * 89.99948 * 12 10 8 14 14 C 1.53005 * 109.47107 * 300.00050 * 13 12 10 15 15 C 1.52995 * 109.46947 * 60.00296 * 13 12 10 16 16 C 1.53004 * 109.47275 * 180.02562 * 13 12 10 17 17 N 1.46491 * 109.47147 * 179.97438 * 16 13 12 18 18 C 1.36937 * 120.00335 * 179.97438 * 17 16 13 19 19 H 1.08003 * 119.99333 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00482 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99757 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00093 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47031 * 90.00509 * 22 20 18 24 24 H 1.48497 * 109.47055 * 210.00313 * 22 20 18 25 25 H 1.48498 * 109.47095 * 330.00394 * 22 20 18 26 26 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 27 27 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 30 30 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 31 31 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 32 32 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 33 33 H 1.09000 * 109.47428 * 300.00004 * 7 6 5 34 34 H 1.09004 * 109.47230 * 59.99848 * 7 6 5 35 35 H 1.08995 * 109.47329 * 89.99566 * 11 10 8 36 36 H 1.09001 * 109.47140 * 209.99805 * 11 10 8 37 37 H 1.09000 * 109.47270 * 329.99852 * 11 10 8 38 38 H 1.08997 * 109.47334 * 210.00488 * 12 10 8 39 39 H 1.09011 * 109.46707 * 330.00026 * 12 10 8 40 40 H 1.09006 * 109.46818 * 60.00219 * 14 13 12 41 41 H 1.08998 * 109.46631 * 179.97438 * 14 13 12 42 42 H 1.08999 * 109.47180 * 300.00448 * 14 13 12 43 43 H 1.08995 * 109.47324 * 59.99674 * 15 13 12 44 44 H 1.09000 * 109.47129 * 180.02562 * 15 13 12 45 45 H 1.09006 * 109.47340 * 300.00003 * 15 13 12 46 46 H 1.09004 * 109.46546 * 299.99938 * 16 13 12 47 47 H 1.08999 * 109.46927 * 59.99604 * 16 13 12 48 48 H 0.97010 * 120.00146 * 0.02562 * 17 16 13 49 49 H 0.96997 * 119.99627 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5074 -1.4589 8 6 5.7934 -3.6522 -1.4659 9 8 6.1886 -4.1184 -0.4183 10 7 6.2297 -4.1586 -2.6361 11 6 5.7518 -3.5959 -3.9015 12 6 7.1819 -5.2719 -2.6429 13 6 6.4173 -6.5971 -2.6482 14 6 5.5395 -6.6845 -1.3981 15 6 5.5360 -6.6723 -3.8966 16 6 7.4118 -7.7598 -2.6546 17 7 6.6797 -9.0287 -2.6591 18 6 7.3646 -10.2144 -2.6658 19 1 8.4446 -10.2141 -2.6673 20 6 6.6709 -11.4167 -2.6695 21 7 5.3546 -11.4170 -2.6672 22 14 7.6053 -13.0342 -2.6778 23 1 7.8552 -13.4686 -1.2800 24 1 6.8018 -14.0664 -3.3807 25 1 8.9015 -12.8534 -3.3793 26 7 2.2199 -1.1083 -0.0064 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3633 -0.8874 -0.5184 29 1 -0.3633 0.8926 -0.5093 30 1 1.8392 2.1308 0.0005 31 1 5.3966 -1.8274 0.5002 32 1 4.0439 -2.9843 0.4958 33 1 3.9003 -2.8071 -1.9733 34 1 5.2530 -1.6502 -1.9690 35 1 6.4142 -2.7883 -4.2131 36 1 5.7432 -4.3739 -4.6649 37 1 4.7425 -3.2068 -3.7679 38 1 7.8074 -5.2097 -3.5334 39 1 7.8099 -5.2183 -1.7534 40 1 4.8309 -5.8561 -1.3931 41 1 4.9944 -7.6284 -1.4022 42 1 6.1673 -6.6308 -0.5087 43 1 6.1614 -6.6101 -4.7871 44 1 4.9909 -7.6162 -3.9002 45 1 4.8274 -5.8440 -3.8916 46 1 8.0375 -7.6977 -3.5451 47 1 8.0394 -7.7060 -1.7651 48 1 5.7096 -9.0289 -2.6582 49 1 4.8699 -12.2572 -2.6694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275691617.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:51 Heat of formation + Delta-G solvation = -10.302787 kcal Electronic energy + Delta-G solvation = -27237.915065 eV Core-core repulsion = 23519.144483 eV Total energy + Delta-G solvation = -3718.770582 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.36368 -40.78524 -38.77685 -36.40798 -35.30425 -34.75522 -32.35671 -31.85880 -28.98595 -28.59682 -28.30457 -27.49604 -27.21914 -25.94221 -24.33219 -22.94530 -20.68130 -20.33926 -19.77091 -19.11558 -18.68032 -17.88583 -17.29167 -16.99971 -16.51910 -16.11268 -15.93710 -15.75800 -15.45207 -15.17905 -14.99670 -14.49853 -14.37397 -14.18618 -13.98329 -13.83909 -13.72584 -13.63516 -13.51639 -13.25160 -13.20792 -12.95088 -12.84681 -12.73523 -12.51940 -12.42553 -12.25562 -12.21643 -12.12900 -12.09376 -11.64805 -11.61981 -11.48196 -10.93568 -10.76508 -10.60104 -10.37097 -9.62614 -9.53191 -8.96841 -7.94131 -5.21939 -0.27916 0.41798 0.79622 1.45832 1.48397 1.56560 1.68386 1.76444 2.10482 2.56748 3.05565 3.38962 3.58528 3.85858 3.89454 3.94811 3.98708 4.05882 4.13938 4.27864 4.29393 4.36696 4.41864 4.49858 4.53352 4.60846 4.68228 4.75112 4.77185 4.84058 4.84606 4.86367 4.93399 4.94100 4.99445 5.01056 5.05428 5.16894 5.18330 5.20503 5.36835 5.45637 5.49328 5.55757 5.61028 6.28338 6.47268 6.81152 7.25079 7.34576 8.12303 8.35771 9.29723 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.002007 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.974814 B =13947.735226 C =14456.392771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.043 3.957 3 C -0.261 4.261 4 S 0.154 5.846 5 C 0.039 3.961 6 C -0.026 4.026 7 C -0.120 4.120 8 C 0.508 3.492 9 O -0.574 6.574 10 N -0.607 5.607 11 C 0.063 3.937 12 C 0.136 3.864 13 C -0.077 4.077 14 C -0.107 4.107 15 C -0.127 4.127 16 C 0.162 3.838 17 N -0.739 5.739 18 C -0.242 4.242 19 H 0.075 0.925 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.290 1.290 24 H -0.294 1.294 25 H -0.268 1.268 26 N -0.502 5.502 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.204 0.796 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.025 0.975 42 H 0.036 0.964 43 H 0.065 0.935 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.029 0.971 47 H 0.009 0.991 48 H 0.375 0.625 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.072 33.303 -0.882 33.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.400 4.400 4 S 0.409 5.591 5 C -0.238 4.238 6 C -0.067 4.067 7 C -0.161 4.161 8 C 0.297 3.703 9 O -0.453 6.453 10 N -0.339 5.339 11 C -0.079 4.079 12 C 0.012 3.988 13 C -0.078 4.078 14 C -0.165 4.165 15 C -0.184 4.184 16 C 0.035 3.965 17 N -0.383 5.383 18 C -0.374 4.374 19 H 0.093 0.907 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.217 1.217 24 H -0.221 1.221 25 H -0.192 1.192 26 N -0.218 5.218 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.221 0.779 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.141 0.859 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.084 0.916 44 H 0.048 0.952 45 H 0.091 0.909 46 H 0.047 0.953 47 H 0.027 0.973 48 H 0.209 0.791 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.966 33.014 -0.363 33.253 hybrid contribution -1.011 -1.605 0.335 1.926 sum -4.976 31.409 -0.028 31.801 Atomic orbital electron populations 1.20442 0.85722 1.04076 1.03508 1.20755 0.99504 0.86521 1.02101 1.27212 0.95014 1.04847 1.12894 1.83858 1.07209 1.00965 1.67086 1.26996 0.93794 0.99440 1.03573 1.19905 0.95846 0.93538 0.97422 1.21613 0.99338 0.97542 0.97613 1.20953 0.81880 0.84252 0.83203 1.90733 1.59349 1.62557 1.32702 1.47836 1.45174 1.33757 1.07087 1.22249 1.01012 1.00148 0.84474 1.21331 0.90532 0.83463 1.03452 1.21015 0.96091 0.94738 0.95952 1.21542 0.98767 0.99256 0.96912 1.21801 0.99293 1.00968 0.96321 1.20749 0.93393 0.84955 0.97374 1.42592 1.05698 1.00893 1.89116 1.19662 0.91504 0.85476 1.40801 0.90726 1.25576 0.96422 1.01121 1.03958 1.69830 1.06639 1.25955 1.59780 0.85116 0.77763 0.79456 0.77295 1.21737 1.22105 1.19236 1.66159 1.05421 1.33268 1.16975 0.90200 0.91467 0.88394 0.77900 0.88491 0.90351 0.87643 0.85894 0.90101 0.89890 0.89582 0.87966 0.91431 0.93180 0.95570 0.94499 0.91615 0.95222 0.90946 0.95262 0.97289 0.79125 0.94097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.31 71.24 0.73 -0.18 16 2 C 0.04 0.72 6.74 41.52 0.28 1.00 16 3 C -0.26 -3.26 11.13 66.78 0.74 -2.52 16 4 S 0.15 2.02 23.18 -56.49 -1.31 0.71 16 5 C 0.04 0.74 6.64 88.52 0.59 1.32 16 6 C -0.03 -0.50 5.09 29.85 0.15 -0.35 16 7 C -0.12 -1.96 4.23 29.85 0.13 -1.83 16 8 C 0.51 12.01 6.08 87.66 0.53 12.54 16 9 O -0.57 -18.65 13.75 -3.05 -0.04 -18.70 16 10 N -0.61 -12.57 2.40 -846.76 -2.03 -14.60 16 11 C 0.06 0.76 9.15 127.77 1.17 1.93 16 12 C 0.14 3.50 4.60 86.38 0.40 3.89 16 13 C -0.08 -2.54 0.60 -52.18 -0.03 -2.58 16 14 C -0.11 -4.11 6.96 71.98 0.50 -3.61 16 15 C -0.13 -3.87 7.05 71.98 0.51 -3.36 16 16 C 0.16 6.76 5.15 86.38 0.44 7.21 16 17 N -0.74 -39.07 5.00 -343.46 -1.72 -40.79 16 18 C -0.24 -14.03 9.99 84.03 0.84 -13.19 16 19 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 21 N -0.97 -61.37 13.06 21.65 0.28 -61.09 16 22 Si 0.97 47.59 29.55 68.60 2.03 49.61 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 24 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 N -0.50 -11.03 10.53 -179.40 -1.89 -12.92 16 27 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 0.63 8.12 -2.38 -0.02 0.61 16 30 H 0.20 1.22 8.06 -2.91 -0.02 1.19 16 31 H 0.10 1.78 8.10 -2.39 -0.02 1.76 16 32 H 0.08 1.92 8.10 -2.39 -0.02 1.90 16 33 H 0.11 1.64 7.40 -2.39 -0.02 1.62 16 34 H 0.12 1.27 8.11 -2.39 -0.02 1.25 16 35 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 1.03 6.05 -2.39 -0.01 1.02 16 37 H 0.09 0.79 6.44 -2.39 -0.02 0.78 16 38 H 0.10 2.11 8.07 -2.39 -0.02 2.09 16 39 H 0.07 2.00 7.42 -2.38 -0.02 1.98 16 40 H 0.05 1.76 6.15 -2.38 -0.01 1.74 16 41 H 0.03 1.14 6.86 -2.39 -0.02 1.13 16 42 H 0.04 1.52 7.73 -2.39 -0.02 1.50 16 43 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 44 H 0.03 1.13 6.86 -2.39 -0.02 1.11 16 45 H 0.07 1.80 5.99 -2.38 -0.01 1.79 16 46 H 0.03 1.16 8.14 -2.38 -0.02 1.15 16 47 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.38 21.14 5.36 -92.70 -0.50 20.65 16 49 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -77.10 397.77 3.22 -73.88 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.45 Total: 27.84 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 7.45 Total: -3.94 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -5.36 Total: -129.40 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.04 Total: -18.70 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.61 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -1.31 Total: 0.71 kcal Total: -77.10 3.22 -73.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275691617.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.576 kcal (2) G-P(sol) polarization free energy of solvation -77.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds