Wall clock time and date at job start Tue Mar 31 2020 23:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46862 * 2 1 4 4 N 1.46497 * 109.47304 * 120.00156 * 2 1 3 5 5 C 1.34774 * 120.00191 * 85.00213 * 4 2 1 6 6 S 1.71197 * 119.99964 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00156 * 179.97438 * 5 4 2 8 8 C 1.47419 * 125.75793 * 0.02810 * 7 5 4 9 9 C 1.54580 * 107.36522 * 179.02314 * 8 7 5 10 10 C 1.53701 * 102.78249 * 339.12735 * 9 8 7 11 11 C 1.53217 * 111.53112 * 153.98097 * 10 9 8 12 12 C 1.54805 * 101.38609 * 98.85512 * 11 10 9 13 13 N 1.46926 * 105.53963 * 24.17877 * 12 11 10 14 14 C 1.46504 * 124.37636 * 163.25275 * 13 12 11 15 15 C 1.52991 * 109.47219 * 89.99790 * 14 13 12 16 16 C 1.50706 * 109.47062 * 180.02562 * 15 14 13 17 17 H 1.07991 * 119.99909 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99738 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00390 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99616 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47075 * 90.00162 * 20 18 16 22 22 H 1.48505 * 109.46773 * 210.00040 * 20 18 16 23 23 H 1.48496 * 109.47245 * 329.99990 * 20 18 16 24 24 C 1.34893 * 111.24530 * 343.25208 * 13 12 11 25 25 O 1.21275 * 125.21804 * 181.28703 * 24 13 12 26 26 C 1.47704 * 125.60902 * 179.97438 * 7 5 4 27 27 H 1.08995 * 109.47532 * 60.00271 * 1 2 3 28 28 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47567 * 299.99786 * 1 2 3 30 30 H 1.08994 * 109.47202 * 240.00237 * 2 1 3 31 31 H 1.08991 * 109.47354 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47033 * 300.00121 * 3 2 1 33 33 H 1.09001 * 109.46855 * 59.99778 * 3 2 1 34 34 H 0.96999 * 119.99743 * 264.99962 * 4 2 1 35 35 H 1.09001 * 109.84342 * 59.57863 * 8 7 5 36 36 H 1.09003 * 109.86169 * 298.47241 * 8 7 5 37 37 H 1.09005 * 110.74711 * 220.80637 * 9 8 7 38 38 H 1.08996 * 110.74844 * 97.45310 * 9 8 7 39 39 H 1.08996 * 111.04076 * 216.88101 * 11 10 9 40 40 H 1.09002 * 111.03844 * 340.79188 * 11 10 9 41 41 H 1.09002 * 110.22961 * 143.19639 * 12 11 10 42 42 H 1.08995 * 110.23448 * 265.07068 * 12 11 10 43 43 H 1.08996 * 109.46680 * 209.99993 * 14 13 12 44 44 H 1.08998 * 109.47002 * 329.99473 * 14 13 12 45 45 H 1.09001 * 109.47054 * 299.99915 * 15 14 13 46 46 H 1.08998 * 109.47392 * 59.99922 * 15 14 13 47 47 H 0.97000 * 119.99969 * 180.02562 * 19 18 16 48 48 H 1.09002 * 110.39056 * 83.78836 * 26 7 5 49 49 H 1.09000 * 110.38910 * 321.51818 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -2.0322 1.1943 6 16 1.7394 -2.9294 -0.2056 7 7 2.5969 -2.6675 2.2945 8 6 2.9824 -2.0242 3.5637 9 6 3.4083 -3.1455 4.5387 10 6 2.7355 -4.3908 3.9395 11 6 3.4873 -5.6719 4.3152 12 6 2.6364 -6.1891 5.5005 13 7 1.3006 -5.6081 5.3092 14 6 0.0869 -6.0875 5.9751 15 6 -0.0959 -5.3437 7.2994 16 6 -1.3441 -5.8373 7.9847 17 1 -1.9469 -6.6045 7.5217 18 6 -1.7170 -5.3087 9.2023 19 7 -0.9838 -4.3734 9.7654 20 14 -3.2646 -5.9201 10.0513 21 1 -2.9257 -7.0660 10.9329 22 1 -3.8479 -4.8241 10.8662 23 1 -4.2503 -6.3559 9.0299 24 6 1.3361 -4.5762 4.4411 25 8 0.3819 -3.9014 4.1174 26 6 2.7845 -4.1264 2.4289 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1298 1.4427 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 2.2490 -0.1823 1.9894 35 1 2.1330 -1.4784 3.9748 36 1 3.8165 -1.3430 3.3953 37 1 3.0315 -2.9483 5.5424 38 1 4.4923 -3.2587 4.5472 39 1 3.4832 -6.3843 3.4903 40 1 4.5062 -5.4490 4.6320 41 1 2.5809 -7.2775 5.4779 42 1 3.0631 -5.8536 6.4456 43 1 -0.7754 -5.9051 5.3338 44 1 0.1765 -7.1565 6.1681 45 1 0.7665 -5.5261 7.9406 46 1 -0.1855 -4.2747 7.1064 47 1 -1.2460 -4.0018 10.6222 48 1 3.7512 -4.4240 2.0227 49 1 1.9802 -4.6609 1.9234 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275774206.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:46 Heat of formation + Delta-G solvation = -20.213367 kcal Electronic energy + Delta-G solvation = -28099.310572 eV Core-core repulsion = 24380.110234 eV Total energy + Delta-G solvation = -3719.200337 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.31351 -39.26855 -37.49251 -36.15684 -34.48200 -33.18643 -31.79963 -30.64973 -29.47119 -28.15299 -27.52554 -25.62524 -24.94872 -23.75141 -22.05884 -21.80128 -21.44088 -20.54544 -18.94414 -18.21670 -17.25764 -16.68427 -16.19579 -15.76037 -15.69578 -15.44909 -15.19074 -14.67042 -14.49735 -14.18765 -13.91322 -13.65114 -13.44275 -13.35387 -12.87363 -12.72799 -12.68973 -12.59668 -12.53845 -12.30321 -12.17078 -12.07730 -11.76067 -11.40851 -11.37745 -11.26689 -11.13193 -11.03961 -10.98656 -10.92610 -10.72640 -10.06083 -9.92030 -9.45033 -9.19884 -9.02857 -8.43095 -8.11090 -7.72727 -7.41157 -6.08516 -4.11793 1.42779 1.87423 2.48851 2.80949 3.10452 3.27519 3.33415 3.36267 3.42777 3.95690 4.16168 4.19165 4.40875 4.51182 4.57851 4.67898 4.73347 4.81641 4.94804 5.06746 5.11512 5.15037 5.28163 5.31402 5.32538 5.36457 5.45814 5.49559 5.54456 5.58232 5.60182 5.66144 5.71452 5.76081 5.90732 5.92933 5.99136 6.18955 6.31930 6.40401 6.64648 6.73219 6.89906 7.16423 7.40041 7.58846 7.75867 7.90530 8.27119 8.55251 8.94672 9.52728 11.02904 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.002784 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.353270 B =10054.619330 C =11018.466195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 C -0.161 4.161 4 N -0.683 5.683 5 C 0.592 3.408 6 S -0.660 6.660 7 N -0.567 5.567 8 C 0.083 3.917 9 C -0.103 4.103 10 C -0.117 4.117 11 C -0.116 4.116 12 C 0.102 3.898 13 N -0.610 5.610 14 C 0.128 3.872 15 C 0.013 3.987 16 C -0.523 4.523 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.526 3.474 25 O -0.517 6.517 26 C 0.143 3.857 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.114 0.886 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.395 0.605 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.017 0.983 46 H 0.019 0.981 47 H 0.261 0.739 48 H 0.090 0.910 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.370 7.169 -13.962 21.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 C -0.219 4.219 4 N -0.314 5.314 5 C 0.233 3.767 6 S -0.532 6.532 7 N -0.275 5.275 8 C -0.042 4.042 9 C -0.141 4.141 10 C -0.121 4.121 11 C -0.154 4.154 12 C -0.022 4.022 13 N -0.343 5.343 14 C 0.008 3.992 15 C -0.024 4.024 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C 0.311 3.689 25 O -0.392 6.392 26 C 0.020 3.980 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.231 0.769 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.035 0.965 46 H 0.037 0.963 47 H 0.071 0.929 48 H 0.108 0.892 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.486 7.094 -14.903 21.961 hybrid contribution -0.556 0.477 1.976 2.107 sum 13.931 7.572 -12.928 20.458 Atomic orbital electron populations 1.22180 0.94171 1.04114 1.01879 1.21391 0.95223 0.92107 0.87867 1.22114 1.01610 0.94902 1.03287 1.45105 1.64931 1.03647 1.17715 1.21704 0.80501 0.85303 0.89232 1.93365 1.72319 1.66094 1.21444 1.47458 1.60645 1.09184 1.10255 1.22503 1.00663 0.97063 0.83975 1.22408 1.01042 0.91330 0.99351 1.21655 0.96655 0.97549 0.96260 1.22481 0.99087 0.94937 0.98922 1.22111 0.82798 0.99155 0.98131 1.48666 1.09133 1.32774 1.43733 1.21832 0.83298 0.98194 0.95858 1.19391 0.97068 0.96078 0.89912 1.21089 1.08829 1.21863 1.04347 0.92442 1.24993 0.97042 0.94884 0.97308 1.69964 1.38660 1.27186 1.17444 0.86549 0.83271 0.78393 0.79556 1.20577 1.21165 1.19732 1.19838 0.89019 0.80576 0.79436 1.90738 1.40393 1.47866 1.60189 1.22159 1.03981 0.78315 0.93510 0.91232 0.90536 0.92876 0.86782 0.92029 0.90208 0.92154 0.76862 0.90075 0.90392 0.88621 0.88787 0.89296 0.88735 0.90245 0.90835 0.91109 0.91466 0.96495 0.96257 0.92934 0.89152 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.43 37.16 0.35 -1.31 16 2 C 0.14 1.27 2.95 -67.93 -0.20 1.07 16 3 C -0.16 -0.96 9.38 37.16 0.35 -0.61 16 4 N -0.68 -6.91 5.04 -55.53 -0.28 -7.19 16 5 C 0.59 7.89 7.85 -86.92 -0.68 7.21 16 6 S -0.66 -11.27 26.86 -107.50 -2.89 -14.16 16 7 N -0.57 -6.78 3.35 -172.75 -0.58 -7.36 16 8 C 0.08 0.78 6.14 -2.71 -0.02 0.76 16 9 C -0.10 -0.94 5.95 -25.54 -0.15 -1.09 16 10 C -0.12 -1.33 0.67 -155.39 -0.10 -1.43 16 11 C -0.12 -0.98 6.26 -25.67 -0.16 -1.14 16 12 C 0.10 1.18 7.37 -2.86 -0.02 1.16 16 13 N -0.61 -10.31 2.95 -172.57 -0.51 -10.82 16 14 C 0.13 2.63 5.88 -4.04 -0.02 2.60 16 15 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 16 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.53 9.06 6.73 -11.36 -0.08 8.98 16 25 O -0.52 -11.30 17.51 5.56 0.10 -11.20 16 26 C 0.14 1.69 5.42 -3.16 -0.02 1.67 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.03 7.48 -51.93 -0.39 0.64 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.11 1.26 6.82 -51.93 -0.35 0.90 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.40 3.11 7.60 -40.82 -0.31 2.80 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.10 1.02 8.00 -51.93 -0.42 0.60 16 38 H 0.09 0.56 7.74 -51.93 -0.40 0.16 16 39 H 0.09 0.65 7.97 -51.93 -0.41 0.24 16 40 H 0.09 0.53 7.62 -51.93 -0.40 0.13 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.57 7.96 -51.93 -0.41 1.16 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.09 0.86 8.04 -51.93 -0.42 0.44 16 49 H 0.10 1.54 7.43 -51.93 -0.39 1.15 16 LS Contribution 404.16 15.07 6.09 6.09 Total: -1.00 -36.98 404.16 -12.18 -49.16 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.51 Total: 0.04 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -1.31 Total: 4.75 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.63 Total: -51.16 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.10 Total: -11.20 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -11.27 SS G_CDS: -2.89 Total: -14.16 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.98 -12.18 -49.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275774206.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.942 kcal (2) G-P(sol) polarization free energy of solvation -36.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds