Wall clock time and date at job start Tue Mar 31 2020 23:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46862 * 2 1 4 4 N 1.46497 * 109.47304 * 120.00156 * 2 1 3 5 5 C 1.34774 * 120.00191 * 85.00213 * 4 2 1 6 6 S 1.71197 * 119.99964 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00156 * 179.97438 * 5 4 2 8 8 C 1.47419 * 125.75793 * 0.02810 * 7 5 4 9 9 C 1.54580 * 107.36522 * 179.02314 * 8 7 5 10 10 C 1.53701 * 102.78249 * 339.12735 * 9 8 7 11 11 C 1.53217 * 111.53112 * 153.98097 * 10 9 8 12 12 C 1.54805 * 101.38609 * 98.85512 * 11 10 9 13 13 N 1.46926 * 105.53963 * 24.17877 * 12 11 10 14 14 C 1.46504 * 124.37636 * 163.25275 * 13 12 11 15 15 C 1.52991 * 109.47219 * 89.99790 * 14 13 12 16 16 C 1.50706 * 109.47062 * 180.02562 * 15 14 13 17 17 H 1.07991 * 119.99909 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99738 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00390 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99616 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47075 * 90.00162 * 20 18 16 22 22 H 1.48505 * 109.46773 * 210.00040 * 20 18 16 23 23 H 1.48496 * 109.47245 * 329.99990 * 20 18 16 24 24 C 1.34893 * 111.24530 * 343.25208 * 13 12 11 25 25 O 1.21275 * 125.21804 * 181.28703 * 24 13 12 26 26 C 1.47704 * 125.60902 * 179.97438 * 7 5 4 27 27 H 1.08995 * 109.47532 * 60.00271 * 1 2 3 28 28 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47567 * 299.99786 * 1 2 3 30 30 H 1.08994 * 109.47202 * 240.00237 * 2 1 3 31 31 H 1.08991 * 109.47354 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47033 * 300.00121 * 3 2 1 33 33 H 1.09001 * 109.46855 * 59.99778 * 3 2 1 34 34 H 0.96999 * 119.99743 * 264.99962 * 4 2 1 35 35 H 1.09001 * 109.84342 * 59.57863 * 8 7 5 36 36 H 1.09003 * 109.86169 * 298.47241 * 8 7 5 37 37 H 1.09005 * 110.74711 * 220.80637 * 9 8 7 38 38 H 1.08996 * 110.74844 * 97.45310 * 9 8 7 39 39 H 1.08996 * 111.04076 * 216.88101 * 11 10 9 40 40 H 1.09002 * 111.03844 * 340.79188 * 11 10 9 41 41 H 1.09002 * 110.22961 * 143.19639 * 12 11 10 42 42 H 1.08995 * 110.23448 * 265.07068 * 12 11 10 43 43 H 1.08996 * 109.46680 * 209.99993 * 14 13 12 44 44 H 1.08998 * 109.47002 * 329.99473 * 14 13 12 45 45 H 1.09001 * 109.47054 * 299.99915 * 15 14 13 46 46 H 1.08998 * 109.47392 * 59.99922 * 15 14 13 47 47 H 0.97000 * 119.99969 * 180.02562 * 19 18 16 48 48 H 1.09002 * 110.39056 * 83.78836 * 26 7 5 49 49 H 1.09000 * 110.38910 * 321.51818 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -2.0322 1.1943 6 16 1.7394 -2.9294 -0.2056 7 7 2.5969 -2.6675 2.2945 8 6 2.9824 -2.0242 3.5637 9 6 3.4083 -3.1455 4.5387 10 6 2.7355 -4.3908 3.9395 11 6 3.4873 -5.6719 4.3152 12 6 2.6364 -6.1891 5.5005 13 7 1.3006 -5.6081 5.3092 14 6 0.0869 -6.0875 5.9751 15 6 -0.0959 -5.3437 7.2994 16 6 -1.3441 -5.8373 7.9847 17 1 -1.9469 -6.6045 7.5217 18 6 -1.7170 -5.3087 9.2023 19 7 -0.9838 -4.3734 9.7654 20 14 -3.2646 -5.9201 10.0513 21 1 -2.9257 -7.0660 10.9329 22 1 -3.8479 -4.8241 10.8662 23 1 -4.2503 -6.3559 9.0299 24 6 1.3361 -4.5762 4.4411 25 8 0.3819 -3.9014 4.1174 26 6 2.7845 -4.1264 2.4289 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1298 1.4427 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 2.2490 -0.1823 1.9894 35 1 2.1330 -1.4784 3.9748 36 1 3.8165 -1.3430 3.3953 37 1 3.0315 -2.9483 5.5424 38 1 4.4923 -3.2587 4.5472 39 1 3.4832 -6.3843 3.4903 40 1 4.5062 -5.4490 4.6320 41 1 2.5809 -7.2775 5.4779 42 1 3.0631 -5.8536 6.4456 43 1 -0.7754 -5.9051 5.3338 44 1 0.1765 -7.1565 6.1681 45 1 0.7665 -5.5261 7.9406 46 1 -0.1855 -4.2747 7.1064 47 1 -1.2460 -4.0018 10.6222 48 1 3.7512 -4.4240 2.0227 49 1 1.9802 -4.6609 1.9234 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275774206.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:45 Heat of formation + Delta-G solvation = -44.618420 kcal Electronic energy + Delta-G solvation = -28100.368854 eV Core-core repulsion = 24380.110234 eV Total energy + Delta-G solvation = -3720.258620 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.38205 -40.30947 -38.48239 -37.53442 -35.95542 -34.76910 -33.11100 -31.60442 -30.86967 -29.24575 -28.21699 -27.17327 -26.19936 -24.79754 -23.62562 -22.63808 -22.34962 -21.86621 -20.16063 -19.19155 -18.70525 -18.24956 -17.26080 -17.08992 -16.86019 -16.57255 -16.34337 -16.28262 -15.52128 -15.13158 -15.00656 -14.68483 -14.59837 -14.52534 -14.34346 -14.25639 -13.76538 -13.53923 -13.29531 -13.24381 -13.14470 -13.08525 -12.97688 -12.87935 -12.62328 -12.56186 -12.28341 -12.16760 -12.11341 -11.99025 -11.96303 -11.87563 -11.60905 -11.44274 -10.69352 -10.61399 -9.92738 -9.57753 -8.97053 -8.72897 -8.27304 -6.39425 0.36564 0.82732 1.36552 1.38637 1.45265 1.49329 1.53087 2.09605 2.24995 2.38697 3.06416 3.12003 3.17378 3.33448 3.74462 3.84826 3.87700 4.02275 4.05045 4.24609 4.27693 4.29430 4.32383 4.36717 4.51171 4.54449 4.60398 4.64926 4.67687 4.75042 4.78049 4.83614 4.87122 4.89364 4.90975 5.04113 5.10715 5.17543 5.18141 5.29960 5.31170 5.43452 5.48358 5.57103 5.69034 5.79172 6.12768 6.27213 6.30298 6.75278 7.18312 7.30380 8.84593 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.002784 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.353270 B =10054.619330 C =11018.466195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 C -0.150 4.150 4 N -0.666 5.666 5 C 0.601 3.399 6 S -0.747 6.747 7 N -0.565 5.565 8 C 0.079 3.921 9 C -0.096 4.096 10 C -0.106 4.106 11 C -0.097 4.097 12 C 0.090 3.910 13 N -0.619 5.619 14 C 0.142 3.858 15 C 0.028 3.972 16 C -0.547 4.547 17 H 0.062 0.938 18 C 0.004 3.996 19 N -0.930 5.930 20 Si 0.967 3.033 21 H -0.264 1.264 22 H -0.283 1.283 23 H -0.267 1.267 24 C 0.509 3.491 25 O -0.579 6.579 26 C 0.144 3.856 27 H 0.088 0.912 28 H 0.035 0.965 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.410 0.590 35 H 0.060 0.940 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.146 0.854 39 H 0.105 0.895 40 H 0.142 0.858 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.091 0.909 45 H 0.005 0.995 46 H -0.028 1.028 47 H 0.265 0.735 48 H 0.127 0.873 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.175 7.311 -13.218 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.033 3.967 3 C -0.208 4.208 4 N -0.297 5.297 5 C 0.237 3.763 6 S -0.620 6.620 7 N -0.272 5.272 8 C -0.045 4.045 9 C -0.134 4.134 10 C -0.111 4.111 11 C -0.135 4.135 12 C -0.031 4.031 13 N -0.351 5.351 14 C 0.020 3.980 15 C -0.010 4.010 16 C -0.586 4.586 17 H 0.081 0.919 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.791 3.209 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.192 1.192 24 C 0.297 3.703 25 O -0.459 6.459 26 C 0.022 3.978 27 H 0.107 0.893 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.249 0.751 35 H 0.078 0.922 36 H 0.140 0.860 37 H 0.096 0.904 38 H 0.164 0.836 39 H 0.124 0.876 40 H 0.160 0.840 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.109 0.891 45 H 0.023 0.977 46 H -0.009 1.009 47 H 0.074 0.926 48 H 0.145 0.855 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.346 7.230 -14.132 23.513 hybrid contribution -1.463 0.487 1.829 2.392 sum 15.883 7.716 -12.303 21.521 Atomic orbital electron populations 1.22138 0.95028 1.01754 1.03027 1.21479 0.94495 0.93973 0.86745 1.22056 1.02167 0.92083 1.04496 1.45143 1.63359 1.02557 1.18616 1.21250 0.80514 0.86049 0.88439 1.93481 1.75802 1.67813 1.24868 1.47605 1.59508 1.09689 1.10425 1.22757 1.01397 0.97780 0.82598 1.22551 1.03642 0.89391 0.97846 1.21599 0.93000 1.00592 0.95892 1.22622 1.00077 0.92964 0.97807 1.22515 0.80305 1.00294 1.00017 1.48788 1.10113 1.33084 1.43090 1.21340 0.84784 0.98761 0.93102 1.19165 0.95991 0.93671 0.92138 1.21545 1.09859 1.22215 1.04950 0.91932 1.25955 1.00513 0.94911 0.98093 1.70088 1.40552 1.28314 1.17971 0.85426 0.78883 0.78198 0.78439 1.18921 1.20818 1.19166 1.20988 0.91032 0.79500 0.78801 1.90690 1.43194 1.49872 1.62156 1.22228 1.04275 0.77959 0.93378 0.89335 0.94558 0.92466 0.88663 0.91021 0.88835 0.91089 0.75107 0.92164 0.85954 0.90390 0.83616 0.87607 0.84008 0.88368 0.90435 0.93768 0.89106 0.97671 1.00917 0.92638 0.85546 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 9.43 71.98 0.68 -2.67 16 2 C 0.14 2.47 2.95 44.99 0.13 2.61 16 3 C -0.15 -1.46 9.38 71.98 0.68 -0.78 16 4 N -0.67 -13.08 5.04 -329.58 -1.66 -14.74 16 5 C 0.60 16.16 7.85 179.06 1.41 17.57 16 6 S -0.75 -26.98 26.86 -56.49 -1.52 -28.50 16 7 N -0.57 -12.99 3.35 -700.45 -2.35 -15.34 16 8 C 0.08 1.29 6.14 86.74 0.53 1.83 16 9 C -0.10 -1.44 5.95 31.37 0.19 -1.25 16 10 C -0.11 -2.22 0.67 -52.75 -0.04 -2.26 16 11 C -0.10 -1.22 6.26 31.28 0.20 -1.02 16 12 C 0.09 1.88 7.37 86.91 0.64 2.53 16 13 N -0.62 -21.19 2.95 -818.22 -2.41 -23.60 16 14 C 0.14 6.06 5.88 86.38 0.51 6.56 16 15 C 0.03 1.51 5.30 29.85 0.16 1.67 16 16 C -0.55 -31.39 9.11 25.60 0.23 -31.16 16 17 H 0.06 3.43 7.74 -2.92 -0.02 3.41 16 18 C 0.00 0.21 5.46 84.66 0.46 0.68 16 19 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 20 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 C 0.51 18.05 6.73 87.36 0.59 18.64 16 25 O -0.58 -27.22 17.51 -3.01 -0.05 -27.28 16 26 C 0.14 3.22 5.42 86.29 0.47 3.68 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.04 1.05 7.48 -2.38 -0.02 1.04 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 2.16 6.82 -2.39 -0.02 2.15 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.41 5.75 7.60 -92.71 -0.70 5.05 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 36 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 1.52 8.00 -2.38 -0.02 1.50 16 38 H 0.15 0.77 7.74 -2.39 -0.02 0.75 16 39 H 0.11 1.06 7.97 -2.39 -0.02 1.04 16 40 H 0.14 0.58 7.62 -2.39 -0.02 0.56 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.04 2.09 7.96 -2.39 -0.02 2.07 16 44 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 45 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 46 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 47 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 48 H 0.13 1.96 8.04 -2.39 -0.02 1.94 16 49 H 0.06 2.01 7.43 -2.39 -0.02 1.99 16 Total: -1.00 -90.45 404.16 1.38 -89.08 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.23 Total: 13.46 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 6.83 Total: 16.62 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -6.13 Total: -109.78 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.05 Total: -27.28 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: -26.98 SS G_CDS: -1.52 Total: -28.50 kcal Total: -90.45 1.38 -89.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275774206.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.457 kcal (2) G-P(sol) polarization free energy of solvation -90.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds