Wall clock time and date at job start Tue Mar 31 2020 23:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46915 * 2 1 4 4 N 1.46501 * 109.46782 * 120.00275 * 2 1 3 5 5 C 1.34775 * 119.99767 * 155.00252 * 4 2 1 6 6 S 1.71201 * 120.00080 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00044 * 180.02562 * 5 4 2 8 8 C 1.47649 * 125.81446 * 0.02562 * 7 5 4 9 9 C 1.54976 * 104.85544 * 155.97665 * 8 7 5 10 10 C 1.55322 * 101.66935 * 36.60528 * 9 8 7 11 11 C 1.46238 * 125.81352 * 179.97438 * 7 5 4 12 12 C 1.53905 * 110.88386 * 302.29970 * 11 7 5 13 13 C 1.54645 * 101.58524 * 144.78778 * 12 11 7 14 14 N 1.46847 * 105.50428 * 335.21349 * 13 12 11 15 15 C 1.46499 * 124.36521 * 196.83728 * 14 13 12 16 16 C 1.53000 * 109.46840 * 90.00364 * 15 14 13 17 17 C 1.50703 * 109.46912 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99776 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00001 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00114 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99955 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46828 * 90.00636 * 21 19 17 23 23 H 1.48494 * 109.47178 * 210.00332 * 21 19 17 24 24 H 1.48500 * 109.47075 * 330.00579 * 21 19 17 25 25 C 1.34661 * 111.26331 * 17.10723 * 14 13 12 26 26 O 1.21285 * 125.07175 * 178.91329 * 25 14 13 27 27 H 1.09006 * 109.47098 * 299.99957 * 1 2 3 28 28 H 1.08996 * 109.47179 * 59.99373 * 1 2 3 29 29 H 1.08996 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46674 * 239.99870 * 2 1 3 31 31 H 1.09004 * 109.46695 * 180.02562 * 3 2 1 32 32 H 1.08991 * 109.47561 * 299.99831 * 3 2 1 33 33 H 1.09000 * 109.47095 * 60.00505 * 3 2 1 34 34 H 0.96998 * 120.00059 * 334.99573 * 4 2 1 35 35 H 1.09000 * 110.36392 * 37.12905 * 8 7 5 36 36 H 1.08997 * 110.45301 * 274.86746 * 8 7 5 37 37 H 1.09000 * 110.98811 * 278.50764 * 9 8 7 38 38 H 1.09003 * 111.02300 * 154.71608 * 9 8 7 39 39 H 1.08998 * 110.76617 * 206.80189 * 10 9 8 40 40 H 1.09003 * 110.76302 * 83.41146 * 10 9 8 41 41 H 1.09002 * 111.00164 * 26.71411 * 12 11 7 42 42 H 1.09000 * 111.03324 * 262.87707 * 12 11 7 43 43 H 1.08996 * 110.23488 * 216.20244 * 13 12 11 44 44 H 1.09009 * 110.23595 * 94.22254 * 13 12 11 45 45 H 1.09002 * 109.47391 * 330.00034 * 15 14 13 46 46 H 1.09001 * 109.46813 * 210.00090 * 15 14 13 47 47 H 1.09001 * 109.47194 * 299.99493 * 16 15 14 48 48 H 1.08992 * 109.47399 * 59.99666 * 16 15 14 49 49 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 3.2403 -1.2592 1.1944 6 16 4.2216 -1.1748 -0.2059 7 7 3.6893 -1.8951 2.2946 8 6 2.9537 -2.0461 3.5659 9 6 3.5671 -3.3033 4.2329 10 6 5.0631 -3.1708 3.8370 11 6 4.9876 -2.5539 2.4322 12 6 5.1666 -3.6430 1.3597 13 6 6.6797 -3.5367 1.0586 14 7 7.0565 -2.1644 1.4206 15 6 8.2893 -1.5032 0.9855 16 6 8.0388 -0.7773 -0.3379 17 6 9.3068 -0.0966 -0.7852 18 1 10.2018 -0.1744 -0.1858 19 6 9.3245 0.6246 -1.9602 20 7 8.2348 0.7189 -2.6903 21 14 10.8960 1.4689 -2.5143 22 1 11.6842 0.5397 -3.3632 23 1 10.5556 2.6849 -3.2955 24 1 11.6975 1.8530 -1.3246 25 6 6.1255 -1.5941 2.2089 26 8 6.1929 -0.4738 2.6686 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.4622 -0.7387 1.9894 35 1 1.8917 -2.1986 3.3738 36 1 3.1022 -1.1707 4.1981 37 1 3.1335 -4.2146 3.8210 38 1 3.4453 -3.2704 5.3156 39 1 5.5422 -4.1492 3.8036 40 1 5.5871 -2.5060 4.5237 41 1 4.5749 -3.4184 0.4722 42 1 4.9152 -4.6270 1.7556 43 1 6.8665 -3.7121 -0.0008 44 1 7.2358 -4.2527 1.6639 45 1 9.0726 -2.2487 0.8484 46 1 8.6016 -0.7829 1.7416 47 1 7.7265 -1.4976 -1.0940 48 1 7.2556 -0.0318 -0.2008 49 1 8.2473 1.2259 -3.5172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275775303.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:54 Heat of formation + Delta-G solvation = -4.235813 kcal Electronic energy + Delta-G solvation = -29194.244649 eV Core-core repulsion = 25475.737150 eV Total energy + Delta-G solvation = -3718.507499 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.22490 -38.81609 -37.34946 -35.76098 -33.85552 -33.32177 -31.75654 -30.73665 -28.99329 -27.81097 -27.33179 -25.42693 -24.60086 -23.42046 -22.09928 -21.59888 -21.23004 -20.30923 -18.97304 -17.85470 -17.26783 -16.40537 -16.07637 -15.60374 -15.19939 -15.08797 -14.72086 -14.51418 -14.27770 -14.22117 -13.64583 -13.59209 -13.34559 -12.94497 -12.82248 -12.48630 -12.46192 -12.43235 -12.11566 -12.05045 -11.93031 -11.71764 -11.61703 -11.44114 -11.19159 -11.04964 -10.92840 -10.80741 -10.73115 -10.52409 -10.49077 -9.76002 -9.63953 -9.50108 -8.96029 -8.62304 -8.14141 -7.77403 -7.24551 -6.80402 -5.77589 -3.81682 1.60257 2.07816 2.66155 3.12938 3.37975 3.43696 3.49324 3.53086 3.76258 4.11834 4.21996 4.41490 4.58161 4.62555 4.69777 4.82202 4.89886 4.92383 5.02405 5.08834 5.19750 5.31437 5.35963 5.44788 5.50016 5.53573 5.56272 5.56777 5.69206 5.72280 5.76137 5.86632 5.92332 6.05348 6.14819 6.25024 6.39506 6.46124 6.50712 6.66299 6.83226 7.10921 7.23502 7.35374 7.78920 7.94886 8.17967 8.32833 8.58543 8.86683 9.27009 9.80157 11.32433 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011143 B = 0.004340 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.206626 B = 6449.345104 C = 8254.047000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 C -0.165 4.165 4 N -0.686 5.686 5 C 0.562 3.438 6 S -0.577 6.577 7 N -0.561 5.561 8 C 0.083 3.917 9 C -0.125 4.125 10 C -0.113 4.113 11 C 0.141 3.859 12 C -0.143 4.143 13 C 0.113 3.887 14 N -0.591 5.591 15 C 0.132 3.868 16 C 0.020 3.980 17 C -0.523 4.523 18 H 0.053 0.947 19 C 0.060 3.940 20 N -0.884 5.884 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 C 0.533 3.467 26 O -0.531 6.531 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.389 0.611 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.017 0.983 48 H 0.030 0.970 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.561 -11.297 14.437 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 C -0.223 4.223 4 N -0.317 5.317 5 C 0.207 3.793 6 S -0.445 6.445 7 N -0.272 5.272 8 C -0.043 4.043 9 C -0.163 4.163 10 C -0.152 4.152 11 C 0.052 3.948 12 C -0.182 4.182 13 C -0.011 4.011 14 N -0.323 5.323 15 C 0.012 3.988 16 C -0.018 4.018 17 C -0.562 4.562 18 H 0.071 0.929 19 C -0.141 4.141 20 N -0.522 5.522 21 Si 0.716 3.284 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.200 1.200 25 C 0.316 3.684 26 O -0.407 6.407 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.225 0.775 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.132 0.868 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.036 0.964 48 H 0.048 0.952 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.937 -10.445 13.451 24.734 hybrid contribution 0.019 0.584 0.630 0.859 sum -17.918 -9.861 14.081 24.831 Atomic orbital electron populations 1.22099 0.94124 1.02388 1.03071 1.21375 0.93189 0.93922 0.88059 1.22169 1.04289 0.94344 1.01531 1.45115 1.14408 1.54665 1.17543 1.22293 0.86305 0.80228 0.90486 1.94210 1.53800 1.77005 1.19500 1.46897 1.16987 1.52720 1.10588 1.22686 0.96446 0.99715 0.85410 1.22773 0.95042 0.97144 1.01319 1.22570 0.97337 1.02081 0.93187 1.21259 0.82539 0.93424 0.97577 1.23165 0.98041 0.96546 1.00457 1.21906 0.93451 0.83809 1.01978 1.48227 1.21967 1.14085 1.48036 1.21779 0.81985 0.95499 0.99560 1.19305 0.97103 0.95604 0.89784 1.21139 0.96546 1.32047 1.06512 0.92906 1.24979 0.95879 0.96502 0.96771 1.70030 1.26912 1.41161 1.14119 0.86669 0.83929 0.79159 0.78646 1.20806 1.21344 1.19967 1.19927 0.83396 0.86556 0.78544 1.90669 1.78249 1.18533 1.53287 0.92452 0.90246 0.92156 0.86645 0.90186 0.91203 0.93295 0.77533 0.90432 0.90175 0.89927 0.89055 0.88476 0.89572 0.86803 0.90165 0.89817 0.92061 0.92025 0.91612 0.96441 0.95197 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.38 37.16 0.35 -0.84 16 2 C 0.14 1.59 2.95 -67.93 -0.20 1.39 16 3 C -0.16 -2.14 9.43 37.16 0.35 -1.79 16 4 N -0.69 -7.96 5.04 -55.52 -0.28 -8.24 16 5 C 0.56 8.70 7.41 -86.92 -0.64 8.05 16 6 S -0.58 -12.29 23.57 -107.50 -2.53 -14.82 16 7 N -0.56 -7.42 2.90 -159.37 -0.46 -7.89 16 8 C 0.08 0.69 6.60 -2.37 -0.02 0.68 16 9 C -0.12 -0.79 7.09 -24.46 -0.17 -0.96 16 10 C -0.11 -1.08 5.96 -25.18 -0.15 -1.23 16 11 C 0.14 1.98 0.71 -132.41 -0.09 1.89 16 12 C -0.14 -1.88 5.71 -25.39 -0.15 -2.02 16 13 C 0.11 1.71 7.36 -2.99 -0.02 1.69 16 14 N -0.59 -11.72 2.94 -172.49 -0.51 -12.23 16 15 C 0.13 3.05 5.89 -4.04 -0.02 3.03 16 16 C 0.02 0.57 5.30 -27.88 -0.15 0.43 16 17 C -0.52 -15.90 9.11 -34.44 -0.31 -16.22 16 18 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.86 5.46 -17.82 -0.10 1.76 16 20 N -0.88 -28.72 13.29 55.43 0.74 -27.99 16 21 Si 0.89 22.97 29.54 -169.99 -5.02 17.95 16 22 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 24 H -0.27 -6.95 7.11 56.52 0.40 -6.54 16 25 C 0.53 10.58 5.21 -11.12 -0.06 10.52 16 26 O -0.53 -12.84 17.60 5.55 0.10 -12.74 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.12 1.63 6.81 -51.93 -0.35 1.27 16 31 H 0.08 1.42 7.49 -51.93 -0.39 1.03 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.39 3.26 7.10 -40.82 -0.29 2.97 16 35 H 0.08 0.44 7.32 -51.93 -0.38 0.06 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.72 7.63 -51.93 -0.40 0.32 16 40 H 0.09 0.92 7.90 -51.93 -0.41 0.51 16 41 H 0.11 1.81 5.59 -51.20 -0.29 1.52 16 42 H 0.08 0.74 7.68 -51.93 -0.40 0.34 16 43 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.07 1.59 7.92 -51.93 -0.41 1.18 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 397.11 15.07 5.98 5.98 Total: -1.00 -40.58 397.11 -11.72 -52.31 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -8.35 Total: 1.29 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.39 Total: 6.37 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.51 Total: -56.34 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.10 Total: -12.74 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Atomic # 16 Polarization: -12.29 SS G_CDS: -2.53 Total: -14.82 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -40.58 -11.72 -52.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275775303.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.072 kcal (2) G-P(sol) polarization free energy of solvation -40.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds