Wall clock time and date at job start Tue Mar 31 2020 23:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46915 * 2 1 4 4 N 1.46501 * 109.46782 * 120.00275 * 2 1 3 5 5 C 1.34775 * 119.99767 * 155.00252 * 4 2 1 6 6 S 1.71201 * 120.00080 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00044 * 180.02562 * 5 4 2 8 8 C 1.47649 * 125.81446 * 0.02562 * 7 5 4 9 9 C 1.54976 * 104.85544 * 155.97665 * 8 7 5 10 10 C 1.55322 * 101.66935 * 36.60528 * 9 8 7 11 11 C 1.46238 * 125.81352 * 179.97438 * 7 5 4 12 12 C 1.53905 * 110.88386 * 302.29970 * 11 7 5 13 13 C 1.54645 * 101.58524 * 144.78778 * 12 11 7 14 14 N 1.46847 * 105.50428 * 335.21349 * 13 12 11 15 15 C 1.46499 * 124.36521 * 196.83728 * 14 13 12 16 16 C 1.53000 * 109.46840 * 90.00364 * 15 14 13 17 17 C 1.50703 * 109.46912 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99776 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00001 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00114 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99955 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46828 * 90.00636 * 21 19 17 23 23 H 1.48494 * 109.47178 * 210.00332 * 21 19 17 24 24 H 1.48500 * 109.47075 * 330.00579 * 21 19 17 25 25 C 1.34661 * 111.26331 * 17.10723 * 14 13 12 26 26 O 1.21285 * 125.07175 * 178.91329 * 25 14 13 27 27 H 1.09006 * 109.47098 * 299.99957 * 1 2 3 28 28 H 1.08996 * 109.47179 * 59.99373 * 1 2 3 29 29 H 1.08996 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46674 * 239.99870 * 2 1 3 31 31 H 1.09004 * 109.46695 * 180.02562 * 3 2 1 32 32 H 1.08991 * 109.47561 * 299.99831 * 3 2 1 33 33 H 1.09000 * 109.47095 * 60.00505 * 3 2 1 34 34 H 0.96998 * 120.00059 * 334.99573 * 4 2 1 35 35 H 1.09000 * 110.36392 * 37.12905 * 8 7 5 36 36 H 1.08997 * 110.45301 * 274.86746 * 8 7 5 37 37 H 1.09000 * 110.98811 * 278.50764 * 9 8 7 38 38 H 1.09003 * 111.02300 * 154.71608 * 9 8 7 39 39 H 1.08998 * 110.76617 * 206.80189 * 10 9 8 40 40 H 1.09003 * 110.76302 * 83.41146 * 10 9 8 41 41 H 1.09002 * 111.00164 * 26.71411 * 12 11 7 42 42 H 1.09000 * 111.03324 * 262.87707 * 12 11 7 43 43 H 1.08996 * 110.23488 * 216.20244 * 13 12 11 44 44 H 1.09009 * 110.23595 * 94.22254 * 13 12 11 45 45 H 1.09002 * 109.47391 * 330.00034 * 15 14 13 46 46 H 1.09001 * 109.46813 * 210.00090 * 15 14 13 47 47 H 1.09001 * 109.47194 * 299.99493 * 16 15 14 48 48 H 1.08992 * 109.47399 * 59.99666 * 16 15 14 49 49 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 3.2403 -1.2592 1.1944 6 16 4.2216 -1.1748 -0.2059 7 7 3.6893 -1.8951 2.2946 8 6 2.9537 -2.0461 3.5659 9 6 3.5671 -3.3033 4.2329 10 6 5.0631 -3.1708 3.8370 11 6 4.9876 -2.5539 2.4322 12 6 5.1666 -3.6430 1.3597 13 6 6.6797 -3.5367 1.0586 14 7 7.0565 -2.1644 1.4206 15 6 8.2893 -1.5032 0.9855 16 6 8.0388 -0.7773 -0.3379 17 6 9.3068 -0.0966 -0.7852 18 1 10.2018 -0.1744 -0.1858 19 6 9.3245 0.6246 -1.9602 20 7 8.2348 0.7189 -2.6903 21 14 10.8960 1.4689 -2.5143 22 1 11.6842 0.5397 -3.3632 23 1 10.5556 2.6849 -3.2955 24 1 11.6975 1.8530 -1.3246 25 6 6.1255 -1.5941 2.2089 26 8 6.1929 -0.4738 2.6686 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.4622 -0.7387 1.9894 35 1 1.8917 -2.1986 3.3738 36 1 3.1022 -1.1707 4.1981 37 1 3.1335 -4.2146 3.8210 38 1 3.4453 -3.2704 5.3156 39 1 5.5422 -4.1492 3.8036 40 1 5.5871 -2.5060 4.5237 41 1 4.5749 -3.4184 0.4722 42 1 4.9152 -4.6270 1.7556 43 1 6.8665 -3.7121 -0.0008 44 1 7.2358 -4.2527 1.6639 45 1 9.0726 -2.2487 0.8484 46 1 8.6016 -0.7829 1.7416 47 1 7.7265 -1.4976 -1.0940 48 1 7.2556 -0.0318 -0.2008 49 1 8.2473 1.2259 -3.5172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275775303.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:53 Heat of formation + Delta-G solvation = -33.839493 kcal Electronic energy + Delta-G solvation = -29195.528361 eV Core-core repulsion = 25475.737150 eV Total energy + Delta-G solvation = -3719.791211 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.41804 -40.08053 -38.48601 -37.36995 -35.59284 -34.68388 -33.46655 -31.73907 -30.73284 -29.00995 -28.23703 -27.01625 -26.13080 -24.52532 -23.52557 -23.04045 -22.22480 -21.65163 -20.39927 -19.01469 -18.70251 -18.35424 -17.29462 -16.98766 -16.64986 -16.47195 -16.18425 -15.84462 -15.72755 -15.26314 -15.05630 -14.60062 -14.53622 -14.32123 -14.23919 -14.00087 -13.78464 -13.50776 -13.29798 -13.20756 -13.10005 -12.93449 -12.81125 -12.74196 -12.56115 -12.37108 -12.27371 -12.15544 -11.98204 -11.92632 -11.84518 -11.79412 -11.58526 -11.36302 -10.86801 -10.57605 -9.84546 -9.47624 -8.77143 -8.43402 -8.17462 -6.33776 0.32646 0.89919 1.29064 1.34876 1.39549 1.50319 1.80436 2.23532 2.34900 2.44429 3.12999 3.22633 3.36917 3.44087 3.72688 3.83303 3.99454 4.01179 4.03105 4.21354 4.26447 4.32488 4.38438 4.49902 4.52959 4.63104 4.65259 4.67563 4.73512 4.78251 4.85860 4.91497 4.93843 4.97664 5.04160 5.12938 5.15525 5.21025 5.29361 5.33866 5.42796 5.49687 5.57196 5.65880 5.67354 5.93811 6.19728 6.35921 6.41038 6.84456 7.28768 7.35845 8.93598 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011143 B = 0.004340 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.206626 B = 6449.345104 C = 8254.047000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.138 3.862 3 C -0.159 4.159 4 N -0.659 5.659 5 C 0.587 3.413 6 S -0.715 6.715 7 N -0.555 5.555 8 C 0.069 3.931 9 C -0.106 4.106 10 C -0.110 4.110 11 C 0.144 3.856 12 C -0.130 4.130 13 C 0.105 3.895 14 N -0.602 5.602 15 C 0.145 3.855 16 C 0.045 3.955 17 C -0.549 4.549 18 H 0.067 0.933 19 C -0.003 4.003 20 N -0.930 5.930 21 Si 0.973 3.027 22 H -0.264 1.264 23 H -0.284 1.284 24 H -0.260 1.260 25 C 0.518 3.482 26 O -0.590 6.590 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.021 0.979 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.413 0.587 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.137 0.863 43 H 0.059 0.941 44 H 0.110 0.890 45 H 0.089 0.911 46 H 0.049 0.951 47 H -0.018 1.018 48 H -0.031 1.031 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.283 -13.764 17.672 30.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.034 3.966 3 C -0.218 4.218 4 N -0.291 5.291 5 C 0.226 3.774 6 S -0.585 6.585 7 N -0.264 5.264 8 C -0.054 4.054 9 C -0.144 4.144 10 C -0.148 4.148 11 C 0.054 3.946 12 C -0.170 4.170 13 C -0.017 4.017 14 N -0.332 5.332 15 C 0.024 3.976 16 C 0.006 3.994 17 C -0.588 4.588 18 H 0.085 0.915 19 C -0.201 4.201 20 N -0.569 5.569 21 Si 0.797 3.203 22 H -0.189 1.189 23 H -0.210 1.210 24 H -0.184 1.184 25 C 0.304 3.696 26 O -0.471 6.471 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.040 0.960 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.253 0.747 35 H 0.133 0.867 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.155 0.845 43 H 0.077 0.923 44 H 0.128 0.872 45 H 0.107 0.893 46 H 0.068 0.932 47 H 0.001 0.999 48 H -0.013 1.013 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.713 -12.973 16.751 28.939 hybrid contribution 0.448 1.395 -0.313 1.498 sum -19.265 -11.578 16.438 27.846 Atomic orbital electron populations 1.22017 0.89753 1.03815 1.04646 1.21404 0.96228 0.92179 0.86805 1.22105 1.00412 0.96150 1.03129 1.45012 1.12982 1.52580 1.18546 1.21542 0.86371 0.80222 0.89295 1.94521 1.57484 1.81493 1.24974 1.47155 1.17196 1.50852 1.11227 1.23204 0.98174 1.01275 0.82740 1.22860 0.91704 0.96658 1.03145 1.22703 1.00278 1.02751 0.89114 1.21412 0.80447 0.91737 1.01013 1.23159 0.95704 0.98886 0.99209 1.22257 0.95925 0.81998 1.01537 1.48306 1.21087 1.15974 1.47866 1.21297 0.84684 0.95807 0.95855 1.18938 0.94872 0.93565 0.91981 1.21624 0.97330 1.32620 1.07206 0.91487 1.26124 1.00202 0.97071 0.96678 1.70241 1.30035 1.42018 1.14651 0.85340 0.78590 0.77836 0.78578 1.18873 1.21001 1.18440 1.21061 0.84619 0.86617 0.77303 1.90608 1.79558 1.21361 1.55571 0.90188 0.89344 0.90771 0.89853 0.96015 0.90020 0.91270 0.74740 0.86661 0.90332 0.87306 0.85862 0.85121 0.91050 0.89923 0.84453 0.92286 0.87185 0.89261 0.93228 0.99921 1.01262 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.38 71.98 0.68 -1.13 16 2 C 0.14 3.24 2.95 44.99 0.13 3.37 16 3 C -0.16 -4.42 9.43 71.98 0.68 -3.74 16 4 N -0.66 -14.88 5.04 -329.57 -1.66 -16.54 16 5 C 0.59 18.76 7.41 179.06 1.33 20.09 16 6 S -0.71 -33.95 23.57 -56.49 -1.33 -35.28 16 7 N -0.56 -14.05 2.90 -658.12 -1.91 -15.96 16 8 C 0.07 0.86 6.60 86.84 0.57 1.43 16 9 C -0.11 -0.70 7.09 32.07 0.23 -0.47 16 10 C -0.11 -1.65 5.96 31.60 0.19 -1.46 16 11 C 0.14 3.86 0.71 3.36 0.00 3.87 16 12 C -0.13 -3.26 5.71 31.46 0.18 -3.08 16 13 C 0.11 3.19 7.36 86.87 0.64 3.83 16 14 N -0.60 -25.17 2.94 -818.09 -2.41 -27.57 16 15 C 0.15 7.20 5.89 86.38 0.51 7.71 16 16 C 0.04 2.80 5.30 29.85 0.16 2.96 16 17 C -0.55 -35.22 9.11 25.60 0.23 -34.99 16 18 H 0.07 4.00 7.74 -2.91 -0.02 3.98 16 19 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 20 N -0.93 -64.41 13.29 21.45 0.28 -64.12 16 21 Si 0.97 48.70 29.54 68.60 2.03 50.72 16 22 H -0.26 -12.39 7.11 99.48 0.71 -11.69 16 23 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 25 C 0.52 21.59 5.21 87.62 0.46 22.05 16 26 O -0.59 -30.69 17.60 -3.04 -0.05 -30.75 16 27 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 2.58 6.81 -2.39 -0.02 2.56 16 31 H 0.02 0.84 7.49 -2.39 -0.02 0.83 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 34 H 0.41 5.64 7.10 -92.71 -0.66 4.98 16 35 H 0.12 0.62 7.32 -2.39 -0.02 0.61 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.12 0.19 8.14 -2.39 -0.02 0.18 16 39 H 0.13 1.13 7.63 -2.39 -0.02 1.11 16 40 H 0.07 1.34 7.90 -2.39 -0.02 1.32 16 41 H 0.08 2.71 5.59 -2.85 -0.02 2.69 16 42 H 0.14 1.85 7.68 -2.39 -0.02 1.84 16 43 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 45 H 0.09 3.85 8.14 -2.39 -0.02 3.83 16 46 H 0.05 2.57 7.92 -2.39 -0.02 2.55 16 47 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 48 H -0.03 -2.32 8.14 -2.39 -0.02 -2.34 16 49 H 0.26 16.88 8.31 -92.71 -0.77 16.11 16 Total: -1.00 -106.42 397.11 1.67 -104.76 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.27 Total: 14.03 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 6.44 Total: 20.72 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -5.69 Total: -124.20 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.05 Total: -30.75 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.72 kcal Atomic # 16 Polarization: -33.95 SS G_CDS: -1.33 Total: -35.28 kcal Total: -106.42 1.67 -104.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275775303.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.916 kcal (2) G-P(sol) polarization free energy of solvation -106.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds