Wall clock time and date at job start Tue Mar 31 2020 22:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31606 * 1 3 3 Si 1.86805 * 120.00043 * 2 1 4 4 H 1.48495 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46857 * 299.99875 * 3 2 1 6 6 H 1.48494 * 109.46969 * 59.99853 * 3 2 1 7 7 C 1.38816 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99654 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99936 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99978 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47051 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47028 * 179.97438 * 11 10 9 13 13 O 1.42900 * 109.47072 * 179.97438 * 12 11 10 14 14 C 1.42897 * 113.99827 * 180.02562 * 13 12 11 15 15 C 1.53039 * 109.45791 * 210.00346 * 14 13 12 16 16 C 1.53195 * 109.31264 * 178.61401 * 15 14 13 17 17 N 1.46926 * 108.77461 * 54.63947 * 16 15 14 18 18 C 1.34775 * 120.63429 * 126.36908 * 17 16 15 19 19 O 1.21691 * 119.99843 * 0.13218 * 18 17 16 20 20 C 1.46664 * 119.99880 * 180.13577 * 18 17 16 21 21 C 1.37924 * 126.21284 * 151.17610 * 20 18 17 22 22 C 1.39927 * 107.10604 * 180.24504 * 21 20 18 23 23 F 1.35104 * 126.07757 * 179.76927 * 22 21 20 24 24 C 1.35567 * 107.84579 * 359.77832 * 22 21 20 25 25 N 1.35749 * 108.83073 * 359.97438 * 24 22 21 26 26 H 0.97000 * 125.67581 * 179.97438 * 25 24 22 27 27 C 1.46935 * 118.73537 * 306.63939 * 17 16 15 28 28 C 1.52761 * 109.00666 * 53.31186 * 27 17 16 29 29 H 0.97000 * 120.00596 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00121 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47407 * 59.99458 * 10 9 7 32 32 H 1.09008 * 109.46941 * 299.99862 * 10 9 7 33 33 H 1.08994 * 109.46948 * 59.99939 * 11 10 9 34 34 H 1.08997 * 109.46664 * 299.99497 * 11 10 9 35 35 H 1.09007 * 109.46963 * 59.99711 * 12 11 10 36 36 H 1.08995 * 109.47131 * 300.00261 * 12 11 10 37 37 H 1.09001 * 109.46550 * 329.97689 * 14 13 12 38 38 H 1.09000 * 109.50188 * 58.66631 * 15 14 13 39 39 H 1.08995 * 109.49968 * 298.56714 * 15 14 13 40 40 H 1.09000 * 109.59273 * 294.85051 * 16 15 14 41 41 H 1.09005 * 109.70624 * 174.49142 * 16 15 14 42 42 H 1.08000 * 126.45184 * 0.02562 * 21 20 18 43 43 H 1.07995 * 125.58768 * 180.02562 * 24 22 21 44 44 H 1.09000 * 109.58607 * 173.14440 * 27 17 16 45 45 H 1.08993 * 109.58944 * 293.57269 * 27 17 16 46 46 H 1.09001 * 109.56625 * 185.55249 * 28 27 17 47 47 H 1.09006 * 109.36092 * 65.49425 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0008 12 6 1.8288 -6.1447 0.0013 13 8 0.9002 -7.2309 0.0011 14 6 1.5148 -8.5210 0.0021 15 6 0.6065 -9.5190 -0.7197 16 6 1.2840 -10.8927 -0.7470 17 7 1.6297 -11.2769 0.6284 18 6 1.2249 -12.4590 1.1336 19 8 0.5687 -13.2209 0.4482 20 6 1.5754 -12.8271 2.5093 21 6 0.8462 -13.6478 3.3442 22 6 1.5395 -13.7215 4.5574 23 9 1.1609 -14.4220 5.6488 24 6 2.6586 -12.9649 4.4429 25 7 2.6932 -12.4188 3.2006 26 1 3.3878 -11.8345 2.8586 27 6 2.4199 -10.3451 1.4447 28 6 1.7344 -8.9799 1.4455 29 1 -0.4851 0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 2.6841 -3.7141 0.8921 32 1 2.6854 -3.7149 -0.8879 33 1 0.4382 -4.7622 -0.8899 34 1 0.4362 -4.7618 0.8901 35 1 2.4548 -6.2025 0.8918 36 1 2.4562 -6.2024 -0.8881 37 1 2.4748 -8.4664 -0.5114 38 1 0.4316 -9.1794 -1.7406 39 1 -0.3445 -9.5927 -0.1923 40 1 2.1900 -10.8415 -1.3507 41 1 0.6029 -11.6301 -1.1720 42 1 -0.0865 -14.1382 3.1075 43 1 3.4013 -12.8208 5.2136 44 1 2.4861 -10.7198 2.4661 45 1 3.4204 -10.2482 1.0233 46 1 2.3623 -8.2565 1.9657 47 1 0.7727 -9.0588 1.9525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276164608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:33 Heat of formation + Delta-G solvation = -56.670698 kcal Electronic energy + Delta-G solvation = -28438.179052 eV Core-core repulsion = 24151.184630 eV Total energy + Delta-G solvation = -4286.994422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.93927 -42.13139 -40.18089 -38.73206 -36.95613 -35.19160 -33.06834 -32.20633 -31.72827 -31.31951 -29.83601 -29.41552 -25.97146 -24.92492 -24.07758 -22.99252 -22.45892 -21.60285 -21.16725 -20.88703 -20.38823 -18.58712 -17.42593 -17.05834 -16.66825 -16.50060 -16.32101 -15.93318 -15.77830 -15.61464 -15.11625 -14.94372 -14.61190 -14.52601 -14.34378 -14.11691 -13.95297 -13.87638 -13.31699 -13.25981 -13.12401 -12.85840 -12.66116 -12.36446 -12.17720 -11.80203 -11.57806 -11.31615 -11.03441 -10.92873 -10.77414 -10.67348 -10.66579 -10.54539 -10.05179 -9.74662 -9.61277 -9.49143 -9.31169 -8.90955 -8.82080 -6.95743 -5.78933 -3.08371 0.81503 1.87615 2.20619 2.27673 2.74645 3.41346 3.43137 3.47739 3.49246 3.69659 4.05228 4.22475 4.35306 4.40222 4.42507 4.57217 4.64290 4.67468 4.72789 4.84458 4.91785 4.98636 5.01676 5.17530 5.22481 5.33018 5.35690 5.41336 5.50062 5.54121 5.54247 5.67775 5.80763 5.84548 5.94780 5.96532 6.04193 6.22910 6.27496 6.32031 6.56169 6.73013 6.77897 6.81898 7.17562 7.53011 7.67207 8.39664 9.50740 10.08487 10.43147 11.44022 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.001624 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.440743 B =17232.226929 C =18085.271419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.125 4.125 12 C 0.068 3.932 13 O -0.378 6.378 14 C 0.091 3.909 15 C -0.133 4.133 16 C 0.116 3.884 17 N -0.609 5.609 18 C 0.592 3.408 19 O -0.520 6.520 20 C -0.023 4.023 21 C -0.132 4.132 22 C 0.007 3.993 23 F -0.125 7.125 24 C -0.003 4.003 25 N -0.531 5.531 26 H 0.429 0.571 27 C 0.089 3.911 28 C -0.158 4.158 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.160 0.840 43 H 0.185 0.815 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.762 -30.197 5.358 31.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.029 3.971 11 C -0.163 4.163 12 C -0.009 4.009 13 O -0.297 6.297 14 C 0.033 3.967 15 C -0.171 4.171 16 C -0.006 4.006 17 N -0.343 5.343 18 C 0.380 3.620 19 O -0.395 6.395 20 C -0.136 4.136 21 C -0.159 4.159 22 C -0.019 4.019 23 F -0.104 7.104 24 C -0.139 4.139 25 N -0.134 5.134 26 H 0.274 0.726 27 C -0.034 4.034 28 C -0.196 4.196 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.177 0.823 43 H 0.202 0.798 44 H 0.108 0.892 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.456 -30.375 4.903 31.659 hybrid contribution 0.744 1.208 0.284 1.447 sum 8.200 -29.167 5.187 30.739 Atomic orbital electron populations 1.69669 1.05142 1.25619 1.57642 1.24771 0.95559 0.97784 1.02949 0.86096 0.78725 0.84003 0.77229 1.20554 1.21804 1.21813 1.19277 0.91073 0.84113 1.42821 0.91085 1.42345 1.05980 0.99911 1.89517 1.20507 0.93291 0.85501 0.97774 1.21674 0.99436 0.91796 1.03386 1.22547 0.91888 0.86651 0.99808 1.87969 1.33790 1.13034 1.94919 1.21964 0.96231 0.84235 0.94278 1.22006 0.99786 0.92950 1.02379 1.21685 1.00918 0.96549 0.81411 1.48079 1.54123 1.17303 1.14795 1.16993 0.79574 0.81239 0.84182 1.90872 1.39234 1.50615 1.58820 1.20160 0.92381 1.06650 0.94431 1.21318 1.01844 1.01051 0.91660 1.16486 0.97532 1.02072 0.85773 1.91472 1.91061 1.76940 1.50962 1.21870 1.01227 1.01717 0.89114 1.42491 1.20228 1.39143 1.11499 0.72643 1.22124 0.95082 0.90168 0.96033 1.22364 1.02697 0.95581 0.99001 0.93489 0.78165 0.96400 0.96367 0.91124 0.91169 0.93481 0.93305 0.91966 0.89378 0.90316 0.90803 0.87929 0.82254 0.79819 0.89213 0.90414 0.89834 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.86 5.60 -59.91 -0.34 -19.20 16 10 C 0.16 3.12 6.26 -4.04 -0.03 3.10 16 11 C -0.12 -2.04 5.70 -26.73 -0.15 -2.19 16 12 C 0.07 0.85 5.75 37.16 0.21 1.07 16 13 O -0.38 -4.69 9.99 -35.23 -0.35 -5.04 16 14 C 0.09 0.79 2.57 -26.69 -0.07 0.72 16 15 C -0.13 -1.06 5.73 -26.61 -0.15 -1.22 16 16 C 0.12 0.82 6.44 -3.71 -0.02 0.79 16 17 N -0.61 -4.39 2.98 -174.57 -0.52 -4.91 16 18 C 0.59 5.58 7.63 -12.86 -0.10 5.49 16 19 O -0.52 -6.68 16.41 5.20 0.09 -6.59 16 20 C -0.02 -0.18 6.37 -81.98 -0.52 -0.70 16 21 C -0.13 -1.15 10.77 -39.06 -0.42 -1.57 16 22 C 0.01 0.06 7.98 -39.90 -0.32 -0.26 16 23 F -0.13 -1.16 17.32 2.25 0.04 -1.12 16 24 C 0.00 -0.02 11.90 -16.77 -0.20 -0.22 16 25 N -0.53 -2.49 4.75 -9.31 -0.04 -2.54 16 26 H 0.43 0.81 6.46 -40.82 -0.26 0.54 16 27 C 0.09 0.43 5.53 -3.93 -0.02 0.41 16 28 C -0.16 -1.11 5.68 -26.83 -0.15 -1.26 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.38 10.42 7.67 -40.82 -0.31 10.11 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.53 7.84 -51.93 -0.41 0.12 16 36 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.06 0.46 7.79 -51.93 -0.40 0.06 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.83 7.00 -51.93 -0.36 0.47 16 42 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.18 0.33 8.06 -52.49 -0.42 -0.09 16 44 H 0.09 0.33 3.88 -51.93 -0.20 0.13 16 45 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.08 0.54 7.84 -51.93 -0.41 0.13 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -35.09 386.88 -8.76 -43.85 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.98 Total: 3.45 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -2.19 Total: -3.35 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.18 Total: -54.35 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.27 Total: -11.63 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.09 -8.76 -43.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276164608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.823 kcal (2) G-P(sol) polarization free energy of solvation -35.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds