Wall clock time and date at job start Tue Mar 31 2020 22:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29028 * 124.91613 * 2 1 4 4 C 1.31778 * 117.12793 * 179.97438 * 3 2 1 5 5 C 1.50698 * 122.75239 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47365 * 305.03038 * 5 4 3 7 7 O 1.21282 * 119.99442 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00079 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00063 * 359.97438 * 8 6 5 10 10 C 1.46503 * 120.00160 * 180.02562 * 8 6 5 11 11 C 1.52997 * 109.47297 * 89.99879 * 10 8 6 12 12 C 1.52999 * 109.47080 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47434 * 54.99895 * 12 11 10 14 14 N 1.46498 * 109.46963 * 294.99494 * 12 11 10 15 15 C 1.36943 * 119.99752 * 154.72381 * 14 12 11 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 12 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 12 18 18 N 1.31611 * 120.00081 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99814 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47483 * 90.00178 * 19 17 15 21 21 H 1.48498 * 109.47011 * 210.00042 * 19 17 15 22 22 H 1.48502 * 109.47495 * 329.99664 * 19 17 15 23 23 C 1.52997 * 109.47114 * 174.99701 * 12 11 10 24 24 C 1.53003 * 109.47435 * 179.97438 * 23 12 11 25 25 C 1.53003 * 109.47241 * 300.00025 * 23 12 11 26 26 C 1.33645 * 114.49897 * 0.23414 * 4 3 2 27 27 S 1.70971 * 124.91831 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.46941 * 90.00209 * 1 2 3 29 29 H 1.08998 * 109.46986 * 210.00044 * 1 2 3 30 30 H 1.08995 * 109.47318 * 330.00246 * 1 2 3 31 31 H 1.09000 * 109.47006 * 185.02454 * 5 4 3 32 32 H 1.09005 * 109.46742 * 65.03161 * 5 4 3 33 33 H 1.09005 * 109.47177 * 269.99953 * 9 8 6 34 34 H 1.09000 * 109.47271 * 30.00397 * 9 8 6 35 35 H 1.08998 * 109.47275 * 150.00022 * 9 8 6 36 36 H 1.09002 * 109.46404 * 329.99577 * 10 8 6 37 37 H 1.08998 * 109.47180 * 209.99833 * 10 8 6 38 38 H 1.08997 * 109.47302 * 59.99802 * 11 10 8 39 39 H 1.09007 * 109.46917 * 300.00336 * 11 10 8 40 40 H 0.97001 * 120.00384 * 335.00737 * 14 12 11 41 41 H 0.97008 * 120.00329 * 179.97438 * 18 17 15 42 42 H 1.09009 * 109.47238 * 59.99946 * 23 12 11 43 43 H 1.09001 * 109.46678 * 59.99591 * 24 23 12 44 44 H 1.08997 * 109.47244 * 180.02562 * 24 23 12 45 45 H 1.09007 * 109.46677 * 300.00047 * 24 23 12 46 46 H 1.08997 * 109.47066 * 59.99753 * 25 23 12 47 47 H 1.09000 * 109.47191 * 180.02562 * 25 23 12 48 48 H 1.08995 * 109.46928 * 299.99922 * 25 23 12 49 49 H 1.07993 * 126.04001 * 179.76671 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 0.0000 6 6 4.2378 2.9358 -1.1641 7 8 3.3239 2.6799 -1.9193 8 7 4.9914 4.0347 -1.3660 9 6 6.0949 4.3439 -0.4534 10 6 4.7063 4.9207 -2.4974 11 6 3.7091 5.9969 -2.0637 12 6 3.4109 6.9218 -3.2455 13 1 3.0689 6.3288 -4.0938 14 7 4.6280 7.6481 -3.6163 15 6 4.7836 8.1161 -4.8938 16 1 4.0072 7.9535 -5.6268 17 6 5.9393 8.7992 -5.2468 18 7 6.0887 9.2494 -6.4744 19 14 7.2824 9.0796 -3.9792 20 1 8.2400 7.9451 -4.0133 21 1 7.9998 10.3423 -4.2892 22 1 6.6753 9.1745 -2.6272 23 6 2.3217 7.9206 -2.8493 24 6 2.0240 8.8459 -4.0309 25 6 1.0507 7.1621 -2.4620 26 6 3.9354 -0.4006 -0.0040 27 16 2.4857 -1.4019 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 5.5448 1.6353 -0.0894 32 1 4.4368 2.5834 0.9313 33 1 5.7283 4.9679 0.3618 34 1 6.5012 3.4175 -0.0475 35 1 6.8763 4.8765 -0.9954 36 1 4.2810 4.3396 -3.3156 37 1 5.6301 5.3942 -2.8298 38 1 4.1344 6.5779 -1.2455 39 1 2.7852 5.5234 -1.7312 40 1 5.3253 7.7940 -2.9580 41 1 6.8962 9.7272 -6.7210 42 1 2.6637 8.5136 -2.0010 43 1 1.6823 8.2532 -4.8794 44 1 1.2483 9.5577 -3.7484 45 1 2.9297 9.3863 -4.3063 46 1 1.2631 6.5031 -1.6201 47 1 0.2745 7.8736 -2.1802 48 1 0.7087 6.5691 -3.3102 49 1 4.9545 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282572941.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:36 Heat of formation + Delta-G solvation = 14.195044 kcal Electronic energy + Delta-G solvation = -27673.223299 eV Core-core repulsion = 23955.515022 eV Total energy + Delta-G solvation = -3717.708277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.50670 -39.27472 -37.42016 -35.40992 -33.39365 -33.02920 -31.68140 -30.44875 -29.51106 -28.06235 -26.97183 -26.21222 -25.21991 -23.30174 -22.51590 -21.19399 -19.95935 -19.45292 -19.15081 -17.76586 -17.45139 -17.01206 -16.14267 -15.47078 -15.27857 -15.14000 -14.94962 -14.06847 -14.00629 -13.88666 -13.70703 -13.59497 -13.37583 -13.07017 -13.03329 -12.77344 -12.51956 -12.42945 -12.34226 -12.26340 -12.19423 -11.68282 -11.62216 -11.53234 -11.32016 -11.00140 -10.79092 -10.48906 -10.33471 -10.14098 -10.01304 -9.91370 -9.77165 -9.65552 -9.54098 -9.38728 -8.90330 -8.86699 -8.50058 -7.20638 -5.73291 -3.07252 0.50463 1.15190 1.49921 2.55375 2.72857 3.16913 3.36138 3.38411 3.45209 3.81526 4.50410 4.60639 4.63744 4.79024 4.96228 4.99897 5.07640 5.14402 5.21051 5.26713 5.28722 5.39229 5.47588 5.51334 5.56646 5.59393 5.63830 5.67937 5.82882 5.89909 5.93039 6.06690 6.10230 6.18834 6.33109 6.40975 6.50126 6.53526 6.69544 6.75105 6.79462 6.88320 7.15873 7.42145 7.46193 7.62438 8.05433 8.29314 8.45836 9.24830 9.97209 10.18059 11.45148 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.002645 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.800295 B =10583.008076 C =11708.703774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.054 3.946 3 N -0.446 5.446 4 C 0.092 3.908 5 C -0.067 4.067 6 C 0.515 3.485 7 O -0.518 6.518 8 N -0.618 5.618 9 C 0.075 3.925 10 C 0.120 3.880 11 C -0.139 4.139 12 C 0.190 3.810 13 H 0.057 0.943 14 N -0.747 5.747 15 C -0.232 4.232 16 H 0.093 0.907 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.880 3.120 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.278 1.278 23 C -0.109 4.109 24 C -0.140 4.140 25 C -0.146 4.146 26 C -0.260 4.260 27 S 0.104 5.896 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.358 0.642 41 H 0.258 0.742 42 H 0.056 0.944 43 H 0.042 0.958 44 H 0.028 0.972 45 H 0.087 0.913 46 H 0.049 0.951 47 H 0.043 0.957 48 H 0.050 0.950 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 -20.084 18.607 27.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.225 4.225 3 N -0.160 5.160 4 C -0.040 4.040 5 C -0.109 4.109 6 C 0.301 3.699 7 O -0.393 6.393 8 N -0.352 5.352 9 C -0.068 4.068 10 C -0.001 4.001 11 C -0.178 4.178 12 C 0.080 3.920 13 H 0.075 0.925 14 N -0.390 5.390 15 C -0.361 4.361 16 H 0.111 0.889 17 C -0.194 4.194 18 N -0.584 5.584 19 Si 0.711 3.289 20 H -0.213 1.213 21 H -0.220 1.220 22 H -0.204 1.204 23 C -0.130 4.130 24 C -0.197 4.197 25 C -0.203 4.203 26 C -0.399 4.399 27 S 0.358 5.642 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.191 0.809 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.106 0.894 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.321 -20.746 17.934 28.142 hybrid contribution 1.887 1.138 0.881 2.373 sum -4.434 -19.608 18.815 27.535 Atomic orbital electron populations 1.20448 0.85178 1.04018 1.04119 1.27049 1.01830 0.90502 1.03092 1.66001 1.04241 1.31171 1.14556 1.19590 0.90068 0.93041 1.01338 1.20295 0.97666 0.93524 0.99450 1.20205 0.82270 0.81261 0.86165 1.90738 1.29374 1.72695 1.46475 1.47969 1.32363 1.24990 1.29843 1.21833 0.89680 1.01332 0.93974 1.21572 1.00317 0.90767 0.87470 1.22250 0.99409 0.96919 0.99216 1.20199 0.86978 0.90617 0.94242 0.92531 1.42845 1.17862 1.67567 1.10680 1.19092 1.02606 1.27965 0.86484 0.88910 1.24655 0.97889 1.00904 0.95924 1.69692 1.28132 1.43367 1.17165 0.86617 0.83110 0.77491 0.81713 1.21319 1.22001 1.20382 1.21708 0.95199 0.97780 0.98313 1.21834 1.02063 0.98755 0.97054 1.21912 0.97819 0.99792 1.00826 1.26719 1.03162 0.95651 1.14402 1.83864 0.97979 1.13275 1.69075 0.89412 0.90239 0.89196 0.87464 0.87330 0.92546 0.91373 0.90626 0.89973 0.89734 0.92573 0.91171 0.80909 0.93202 0.92542 0.93855 0.95255 0.89436 0.93189 0.93832 0.93118 0.80641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.46 36.01 0.38 -0.21 16 2 C 0.05 0.59 7.39 -13.46 -0.10 0.49 16 3 N -0.45 -6.08 9.68 -8.06 -0.08 -6.15 16 4 C 0.09 1.10 5.64 -84.23 -0.47 0.62 16 5 C -0.07 -0.68 4.75 -29.04 -0.14 -0.81 16 6 C 0.51 7.35 7.64 -10.99 -0.08 7.27 16 7 O -0.52 -9.66 15.02 5.56 0.08 -9.57 16 8 N -0.62 -8.21 2.87 -181.57 -0.52 -8.73 16 9 C 0.08 0.70 10.28 59.85 0.62 1.31 16 10 C 0.12 1.94 5.34 -4.04 -0.02 1.92 16 11 C -0.14 -2.28 4.86 -26.73 -0.13 -2.41 16 12 C 0.19 3.64 2.02 -67.93 -0.14 3.50 16 13 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 14 N -0.75 -16.76 4.25 -53.43 -0.23 -16.98 16 15 C -0.23 -6.21 8.06 -15.06 -0.12 -6.33 16 16 H 0.09 2.71 7.64 -52.49 -0.40 2.31 16 17 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 18 N -0.94 -28.90 13.97 55.49 0.78 -28.12 16 19 Si 0.88 21.48 27.74 -169.99 -4.71 16.76 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 22 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 23 C -0.11 -1.96 2.69 -90.62 -0.24 -2.21 16 24 C -0.14 -2.73 8.27 37.16 0.31 -2.43 16 25 C -0.15 -2.27 8.85 37.16 0.33 -1.95 16 26 C -0.26 -2.49 11.07 29.12 0.32 -2.16 16 27 S 0.10 0.91 23.18 -107.50 -2.49 -1.58 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.11 0.74 7.29 -51.93 -0.38 0.36 16 32 H 0.11 0.92 8.11 -51.93 -0.42 0.49 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.43 6.44 -51.93 -0.33 0.10 16 35 H 0.07 0.71 7.89 -51.93 -0.41 0.30 16 36 H 0.08 1.50 7.42 -51.93 -0.39 1.11 16 37 H 0.08 1.42 7.51 -51.93 -0.39 1.03 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.18 6.17 -51.93 -0.32 0.86 16 40 H 0.36 7.91 5.66 -40.82 -0.23 7.68 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.09 2.01 6.02 -51.92 -0.31 1.69 16 46 H 0.05 0.75 6.32 -51.93 -0.33 0.42 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 402.61 15.07 6.07 6.07 Total: -1.00 -34.58 402.61 -8.85 -43.43 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -8.15 Total: 8.33 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 0.41 Total: -3.44 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.05 Total: -59.99 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.76 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.49 Total: -1.58 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.58 -8.85 -43.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282572941.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.626 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds