Wall clock time and date at job start Tue Mar 31 2020 22:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29028 * 124.91613 * 2 1 4 4 C 1.31778 * 117.12793 * 179.97438 * 3 2 1 5 5 C 1.50698 * 122.75239 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47365 * 305.03038 * 5 4 3 7 7 O 1.21282 * 119.99442 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00079 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00063 * 359.97438 * 8 6 5 10 10 C 1.46503 * 120.00160 * 180.02562 * 8 6 5 11 11 C 1.52997 * 109.47297 * 89.99879 * 10 8 6 12 12 C 1.52999 * 109.47080 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47434 * 54.99895 * 12 11 10 14 14 N 1.46498 * 109.46963 * 294.99494 * 12 11 10 15 15 C 1.36943 * 119.99752 * 154.72381 * 14 12 11 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 12 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 12 18 18 N 1.31611 * 120.00081 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99814 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47483 * 90.00178 * 19 17 15 21 21 H 1.48498 * 109.47011 * 210.00042 * 19 17 15 22 22 H 1.48502 * 109.47495 * 329.99664 * 19 17 15 23 23 C 1.52997 * 109.47114 * 174.99701 * 12 11 10 24 24 C 1.53003 * 109.47435 * 179.97438 * 23 12 11 25 25 C 1.53003 * 109.47241 * 300.00025 * 23 12 11 26 26 C 1.33645 * 114.49897 * 0.23414 * 4 3 2 27 27 S 1.70971 * 124.91831 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.46941 * 90.00209 * 1 2 3 29 29 H 1.08998 * 109.46986 * 210.00044 * 1 2 3 30 30 H 1.08995 * 109.47318 * 330.00246 * 1 2 3 31 31 H 1.09000 * 109.47006 * 185.02454 * 5 4 3 32 32 H 1.09005 * 109.46742 * 65.03161 * 5 4 3 33 33 H 1.09005 * 109.47177 * 269.99953 * 9 8 6 34 34 H 1.09000 * 109.47271 * 30.00397 * 9 8 6 35 35 H 1.08998 * 109.47275 * 150.00022 * 9 8 6 36 36 H 1.09002 * 109.46404 * 329.99577 * 10 8 6 37 37 H 1.08998 * 109.47180 * 209.99833 * 10 8 6 38 38 H 1.08997 * 109.47302 * 59.99802 * 11 10 8 39 39 H 1.09007 * 109.46917 * 300.00336 * 11 10 8 40 40 H 0.97001 * 120.00384 * 335.00737 * 14 12 11 41 41 H 0.97008 * 120.00329 * 179.97438 * 18 17 15 42 42 H 1.09009 * 109.47238 * 59.99946 * 23 12 11 43 43 H 1.09001 * 109.46678 * 59.99591 * 24 23 12 44 44 H 1.08997 * 109.47244 * 180.02562 * 24 23 12 45 45 H 1.09007 * 109.46677 * 300.00047 * 24 23 12 46 46 H 1.08997 * 109.47066 * 59.99753 * 25 23 12 47 47 H 1.09000 * 109.47191 * 180.02562 * 25 23 12 48 48 H 1.08995 * 109.46928 * 299.99922 * 25 23 12 49 49 H 1.07993 * 126.04001 * 179.76671 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 0.0000 6 6 4.2378 2.9358 -1.1641 7 8 3.3239 2.6799 -1.9193 8 7 4.9914 4.0347 -1.3660 9 6 6.0949 4.3439 -0.4534 10 6 4.7063 4.9207 -2.4974 11 6 3.7091 5.9969 -2.0637 12 6 3.4109 6.9218 -3.2455 13 1 3.0689 6.3288 -4.0938 14 7 4.6280 7.6481 -3.6163 15 6 4.7836 8.1161 -4.8938 16 1 4.0072 7.9535 -5.6268 17 6 5.9393 8.7992 -5.2468 18 7 6.0887 9.2494 -6.4744 19 14 7.2824 9.0796 -3.9792 20 1 8.2400 7.9451 -4.0133 21 1 7.9998 10.3423 -4.2892 22 1 6.6753 9.1745 -2.6272 23 6 2.3217 7.9206 -2.8493 24 6 2.0240 8.8459 -4.0309 25 6 1.0507 7.1621 -2.4620 26 6 3.9354 -0.4006 -0.0040 27 16 2.4857 -1.4019 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 5.5448 1.6353 -0.0894 32 1 4.4368 2.5834 0.9313 33 1 5.7283 4.9679 0.3618 34 1 6.5012 3.4175 -0.0475 35 1 6.8763 4.8765 -0.9954 36 1 4.2810 4.3396 -3.3156 37 1 5.6301 5.3942 -2.8298 38 1 4.1344 6.5779 -1.2455 39 1 2.7852 5.5234 -1.7312 40 1 5.3253 7.7940 -2.9580 41 1 6.8962 9.7272 -6.7210 42 1 2.6637 8.5136 -2.0010 43 1 1.6823 8.2532 -4.8794 44 1 1.2483 9.5577 -3.7484 45 1 2.9297 9.3863 -4.3063 46 1 1.2631 6.5031 -1.6201 47 1 0.2745 7.8736 -2.1802 48 1 0.7087 6.5691 -3.3102 49 1 4.9545 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282572941.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:35 Heat of formation + Delta-G solvation = -8.381330 kcal Electronic energy + Delta-G solvation = -27674.202284 eV Core-core repulsion = 23955.515022 eV Total energy + Delta-G solvation = -3718.687262 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.39592 -40.25144 -38.98179 -36.56744 -34.96018 -34.16870 -33.16091 -32.07457 -30.46012 -28.85206 -28.04710 -27.61089 -26.58401 -24.65851 -23.79361 -22.63223 -21.06917 -20.72359 -20.18680 -19.44068 -18.57386 -17.99432 -17.16101 -16.89098 -16.48659 -16.08458 -15.87764 -15.82515 -15.28458 -15.11287 -15.01779 -14.58327 -14.46063 -14.28710 -14.18799 -13.89081 -13.74637 -13.52415 -13.31504 -13.16482 -13.02891 -12.99881 -12.91402 -12.85731 -12.77588 -12.48308 -12.32191 -12.25418 -11.92412 -11.74051 -11.68862 -11.48039 -11.28817 -10.88144 -10.77761 -10.50689 -10.28859 -9.65290 -9.59594 -9.19937 -7.93321 -5.25337 -0.21151 0.48049 0.78506 1.39807 1.44164 1.51561 1.70133 1.73468 2.20919 2.54804 3.15513 3.36623 3.61120 3.68350 3.88947 3.92646 4.12656 4.16238 4.20990 4.31122 4.36379 4.38561 4.46223 4.47628 4.52449 4.63314 4.64648 4.67331 4.73288 4.76308 4.82241 4.88121 4.95623 4.99607 5.02008 5.08032 5.12481 5.17807 5.25133 5.31038 5.36603 5.58781 5.60893 5.71804 5.88389 6.29252 6.46748 6.90147 7.16035 7.26044 7.90378 8.12616 9.28526 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.002645 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.800295 B =10583.008076 C =11708.703774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.029 3.971 3 N -0.490 5.490 4 C 0.060 3.940 5 C -0.057 4.057 6 C 0.508 3.492 7 O -0.572 6.572 8 N -0.616 5.616 9 C 0.066 3.934 10 C 0.127 3.873 11 C -0.121 4.121 12 C 0.188 3.812 13 H 0.030 0.970 14 N -0.743 5.743 15 C -0.205 4.205 16 H 0.055 0.945 17 C -0.070 4.070 18 N -0.989 5.989 19 Si 0.951 3.049 20 H -0.277 1.277 21 H -0.305 1.305 22 H -0.248 1.248 23 C -0.104 4.104 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.259 4.259 27 S 0.143 5.857 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.144 0.856 32 H 0.128 0.872 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.365 0.635 41 H 0.254 0.746 42 H 0.065 0.935 43 H 0.030 0.970 44 H 0.052 0.948 45 H 0.049 0.951 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.042 0.958 49 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.464 -21.613 22.434 31.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.249 4.249 3 N -0.205 5.205 4 C -0.072 4.072 5 C -0.099 4.099 6 C 0.296 3.704 7 O -0.451 6.451 8 N -0.349 5.349 9 C -0.075 4.075 10 C 0.004 3.996 11 C -0.161 4.161 12 C 0.079 3.921 13 H 0.048 0.952 14 N -0.386 5.386 15 C -0.336 4.336 16 H 0.073 0.927 17 C -0.261 4.261 18 N -0.641 5.641 19 Si 0.779 3.221 20 H -0.204 1.204 21 H -0.232 1.232 22 H -0.173 1.173 23 C -0.125 4.125 24 C -0.192 4.192 25 C -0.195 4.195 26 C -0.398 4.398 27 S 0.398 5.602 28 H 0.105 0.895 29 H 0.125 0.875 30 H 0.103 0.897 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.199 0.801 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.062 0.938 49 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.453 -22.306 21.840 31.690 hybrid contribution 1.502 1.517 -0.365 2.166 sum -3.952 -20.789 21.475 30.149 Atomic orbital electron populations 1.20558 0.83746 1.05114 1.04365 1.27534 1.03152 0.91159 1.03040 1.66019 1.05516 1.32960 1.16040 1.19923 0.90004 0.94395 1.02883 1.20374 0.99124 0.92509 0.97919 1.21017 0.81311 0.81442 0.86605 1.90713 1.31787 1.73976 1.48626 1.48029 1.33272 1.24226 1.29385 1.22155 0.88333 1.03599 0.93435 1.21260 0.99536 0.90724 0.88125 1.22054 0.99631 0.96342 0.98032 1.20308 0.86213 0.90912 0.94650 0.95185 1.42744 1.19255 1.67481 1.09146 1.18925 1.01044 1.26213 0.87456 0.92687 1.25441 1.00840 1.01673 0.98102 1.69893 1.28938 1.45421 1.19858 0.85466 0.79705 0.76808 0.80166 1.20365 1.23225 1.17273 1.21617 0.95953 0.97264 0.97675 1.21733 1.00886 0.99069 0.97474 1.21814 0.96828 0.99951 1.00861 1.27143 1.04853 0.95181 1.12614 1.83656 0.96992 1.11667 1.67890 0.89494 0.87548 0.89727 0.83798 0.85394 0.91097 0.87859 0.90692 0.93109 0.90377 0.90823 0.91214 0.80118 0.93750 0.91699 0.95126 0.92866 0.93211 0.92183 0.91876 0.93836 0.77737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.46 71.24 0.75 -0.39 16 2 C 0.03 0.61 7.39 88.52 0.65 1.27 16 3 N -0.49 -13.10 9.68 -179.40 -1.74 -14.84 16 4 C 0.06 1.33 5.64 41.52 0.23 1.56 16 5 C -0.06 -1.00 4.75 29.10 0.14 -0.86 16 6 C 0.51 13.85 7.64 87.66 0.67 14.51 16 7 O -0.57 -21.66 15.02 -3.04 -0.05 -21.70 16 8 N -0.62 -15.25 2.87 -846.75 -2.43 -17.69 16 9 C 0.07 0.98 10.28 127.77 1.31 2.30 16 10 C 0.13 4.05 5.34 86.38 0.46 4.51 16 11 C -0.12 -3.86 4.86 30.59 0.15 -3.72 16 12 C 0.19 7.24 2.02 44.99 0.09 7.33 16 13 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 14 N -0.74 -33.28 4.25 -322.94 -1.37 -34.65 16 15 C -0.21 -11.36 8.06 84.03 0.68 -10.69 16 16 H 0.06 3.42 7.64 -2.91 -0.02 3.39 16 17 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 18 N -0.99 -63.53 13.97 21.65 0.30 -63.23 16 19 Si 0.95 44.40 27.74 68.60 1.90 46.30 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 22 H -0.25 -10.26 6.52 99.48 0.65 -9.62 16 23 C -0.10 -3.66 2.69 -10.79 -0.03 -3.69 16 24 C -0.13 -5.30 8.27 71.98 0.60 -4.71 16 25 C -0.14 -4.05 8.85 71.98 0.64 -3.42 16 26 C -0.26 -4.29 11.07 66.78 0.74 -3.55 16 27 S 0.14 2.24 23.18 -56.49 -1.31 0.93 16 28 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.14 1.34 7.29 -2.39 -0.02 1.32 16 32 H 0.13 1.70 8.11 -2.38 -0.02 1.68 16 33 H 0.07 0.88 8.14 -2.38 -0.02 0.87 16 34 H 0.10 0.81 6.44 -2.39 -0.02 0.79 16 35 H 0.07 1.15 7.89 -2.39 -0.02 1.13 16 36 H 0.05 1.93 7.42 -2.39 -0.02 1.91 16 37 H 0.08 2.57 7.51 -2.39 -0.02 2.55 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.07 2.27 6.17 -2.38 -0.01 2.25 16 40 H 0.37 15.46 5.66 -92.71 -0.52 14.94 16 41 H 0.25 15.63 8.31 -92.70 -0.77 14.86 16 42 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 43 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 2.33 6.02 -2.38 -0.01 2.32 16 46 H 0.06 1.67 6.32 -2.39 -0.02 1.66 16 47 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.21 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -80.24 402.61 3.21 -77.03 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.36 Total: 30.98 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 7.54 Total: -3.14 kcal Atomic # 7 Polarization: -125.17 SS G_CDS: -5.24 Total: -130.40 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.05 Total: -21.70 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.30 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.31 Total: 0.93 kcal Total: -80.24 3.21 -77.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282572941.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.652 kcal (2) G-P(sol) polarization free energy of solvation -80.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds