Wall clock time and date at job start Tue Mar 31 2020 22:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29031 * 124.91179 * 2 1 4 4 C 1.31782 * 117.11711 * 180.02562 * 3 2 1 5 5 C 1.50708 * 122.74308 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47178 * 305.02243 * 5 4 3 7 7 O 1.21280 * 120.00401 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00125 * 179.97438 * 6 5 4 9 9 C 1.46507 * 119.99837 * 0.02562 * 8 6 5 10 10 C 1.46493 * 120.00498 * 180.02562 * 8 6 5 11 11 C 1.53005 * 109.47092 * 89.99850 * 10 8 6 12 12 C 1.52999 * 109.47150 * 180.02562 * 11 10 8 13 13 H 1.09005 * 109.47352 * 305.00326 * 12 11 10 14 14 N 1.46506 * 109.47091 * 64.99957 * 12 11 10 15 15 C 1.36939 * 120.00073 * 204.72442 * 14 12 11 16 16 H 1.08004 * 119.99859 * 0.02562 * 15 14 12 17 17 C 1.38805 * 119.99849 * 180.02562 * 15 14 12 18 18 N 1.31625 * 120.00056 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00155 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46896 * 90.00225 * 19 17 15 21 21 H 1.48501 * 109.47275 * 210.00265 * 19 17 15 22 22 H 1.48499 * 109.47039 * 330.00065 * 19 17 15 23 23 C 1.52995 * 109.47197 * 185.00058 * 12 11 10 24 24 C 1.52996 * 109.46992 * 60.00301 * 23 12 11 25 25 C 1.52999 * 109.47197 * 179.97438 * 23 12 11 26 26 C 1.33635 * 114.50999 * 0.23235 * 4 3 2 27 27 S 1.70973 * 124.91757 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47256 * 89.99977 * 1 2 3 29 29 H 1.09002 * 109.46966 * 209.99992 * 1 2 3 30 30 H 1.08998 * 109.47217 * 329.99923 * 1 2 3 31 31 H 1.09000 * 109.46996 * 185.02177 * 5 4 3 32 32 H 1.09000 * 109.47037 * 65.02774 * 5 4 3 33 33 H 1.08999 * 109.47102 * 270.00088 * 9 8 6 34 34 H 1.09008 * 109.46619 * 29.99846 * 9 8 6 35 35 H 1.09001 * 109.47137 * 149.99844 * 9 8 6 36 36 H 1.09006 * 109.47104 * 330.00469 * 10 8 6 37 37 H 1.09000 * 109.47564 * 210.00270 * 10 8 6 38 38 H 1.08996 * 109.46681 * 60.00306 * 11 10 8 39 39 H 1.09004 * 109.47038 * 300.00156 * 11 10 8 40 40 H 0.97005 * 119.99811 * 25.00235 * 14 12 11 41 41 H 0.97000 * 119.99835 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.47379 * 300.00069 * 23 12 11 43 43 H 1.09001 * 109.47741 * 59.99690 * 24 23 12 44 44 H 1.09008 * 109.47401 * 180.02562 * 24 23 12 45 45 H 1.08997 * 109.47320 * 299.99619 * 24 23 12 46 46 H 1.09002 * 109.47121 * 60.00047 * 25 23 12 47 47 H 1.09005 * 109.47224 * 179.97438 * 25 23 12 48 48 H 1.09005 * 109.47352 * 300.00268 * 25 23 12 49 49 H 1.07991 * 126.04670 * 179.76955 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2454 1.0581 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 4.5306 2.0247 -0.0012 6 6 4.2369 2.9362 -1.1647 7 8 3.3221 2.6813 -1.9189 8 7 4.9904 4.0354 -1.3666 9 6 6.0952 4.3437 -0.4552 10 6 4.7046 4.9218 -2.4974 11 6 3.7075 5.9978 -2.0626 12 6 3.4086 6.9232 -3.2437 13 1 4.3425 7.3281 -3.6336 14 7 2.7272 6.1663 -4.2969 15 6 2.8012 6.5854 -5.5985 16 1 3.3623 7.4737 -5.8487 17 6 2.1553 5.8685 -6.5962 18 7 2.2260 6.2716 -7.8472 19 14 1.1855 4.3317 -6.1636 20 1 -0.2209 4.7020 -5.8634 21 1 1.2151 3.3885 -7.3102 22 1 1.7914 3.6828 -4.9732 23 6 2.5103 8.0708 -2.7779 24 6 3.2219 8.8613 -1.6781 25 6 2.2118 8.9965 -3.9589 26 6 3.9354 -0.4005 -0.0059 27 16 2.4856 -1.4019 -0.0006 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 5.5447 1.6354 -0.0915 32 1 4.4374 2.5830 0.9304 33 1 5.7298 4.9668 0.3610 34 1 6.5019 3.4167 -0.0507 35 1 6.8759 4.8767 -0.9979 36 1 4.2786 4.3411 -3.3156 37 1 5.6281 5.3954 -2.8303 38 1 4.1335 6.5784 -1.2444 39 1 2.7839 5.5241 -1.7297 40 1 2.2203 5.3705 -4.0717 41 1 1.7748 5.7704 -8.5445 42 1 1.5763 7.6659 -2.3881 43 1 4.1558 9.2662 -2.0678 44 1 2.5817 9.6786 -1.3458 45 1 3.4348 8.2021 -0.8366 46 1 1.7051 8.4337 -4.7428 47 1 1.5715 9.8139 -3.6271 48 1 3.1460 9.4014 -4.3483 49 1 4.9545 -0.7580 -0.0108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282572942.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:38 Heat of formation + Delta-G solvation = 15.560206 kcal Electronic energy + Delta-G solvation = -27959.130955 eV Core-core repulsion = 24241.481876 eV Total energy + Delta-G solvation = -3717.649079 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.44617 -39.22011 -37.38733 -35.38726 -33.33069 -32.96962 -31.65694 -30.37561 -29.45506 -28.00381 -26.98594 -26.22206 -25.20061 -23.24116 -22.43091 -21.19135 -19.89520 -19.38301 -19.14099 -17.73101 -17.38437 -16.93624 -16.10538 -15.43622 -15.22706 -15.07945 -14.90744 -13.97849 -13.94908 -13.86740 -13.72552 -13.47182 -13.34276 -13.09905 -12.99202 -12.73049 -12.48828 -12.34480 -12.30588 -12.24922 -12.08703 -11.74214 -11.57643 -11.52093 -11.30565 -10.92205 -10.73381 -10.41176 -10.29523 -10.12824 -9.96232 -9.82060 -9.70454 -9.59394 -9.47070 -9.32445 -8.83827 -8.79409 -8.46414 -7.12193 -5.66726 -2.99949 0.57053 1.21943 1.56384 2.61574 2.79725 3.20046 3.50975 3.58065 3.65709 3.88323 4.55247 4.68436 4.72883 4.82531 4.99603 5.02863 5.11973 5.16783 5.25231 5.28677 5.30295 5.39325 5.48989 5.53469 5.55773 5.60950 5.68053 5.69550 5.81901 5.87593 5.99278 6.00482 6.10800 6.25064 6.31811 6.40785 6.44882 6.61266 6.63633 6.75364 6.81572 6.88550 7.16019 7.44925 7.49432 7.69498 8.11268 8.37006 8.52830 9.33188 10.06754 10.27340 11.51278 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010450 B = 0.003435 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.820714 B = 8149.429331 C = 9573.360869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.056 3.944 3 N -0.446 5.446 4 C 0.092 3.908 5 C -0.065 4.065 6 C 0.511 3.489 7 O -0.508 6.508 8 N -0.620 5.620 9 C 0.078 3.922 10 C 0.120 3.880 11 C -0.139 4.139 12 C 0.191 3.809 13 H 0.053 0.947 14 N -0.747 5.747 15 C -0.234 4.234 16 H 0.093 0.907 17 C 0.006 3.994 18 N -0.936 5.936 19 Si 0.872 3.128 20 H -0.287 1.287 21 H -0.294 1.294 22 H -0.268 1.268 23 C -0.111 4.111 24 C -0.145 4.145 25 C -0.140 4.140 26 C -0.261 4.261 27 S 0.103 5.897 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.363 0.637 41 H 0.257 0.743 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.043 0.957 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.028 0.972 48 H 0.042 0.958 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.373 -11.108 22.798 26.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.223 4.223 3 N -0.160 5.160 4 C -0.041 4.041 5 C -0.108 4.108 6 C 0.297 3.703 7 O -0.382 6.382 8 N -0.355 5.355 9 C -0.066 4.066 10 C -0.002 4.002 11 C -0.178 4.178 12 C 0.081 3.919 13 H 0.071 0.929 14 N -0.390 5.390 15 C -0.363 4.363 16 H 0.110 0.890 17 C -0.190 4.190 18 N -0.585 5.585 19 Si 0.702 3.298 20 H -0.214 1.214 21 H -0.221 1.221 22 H -0.193 1.193 23 C -0.133 4.133 24 C -0.203 4.203 25 C -0.197 4.197 26 C -0.400 4.400 27 S 0.358 5.642 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.197 0.803 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.047 0.953 48 H 0.061 0.939 49 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.473 -11.726 22.155 25.658 hybrid contribution 0.014 -0.315 0.194 0.371 sum 5.487 -12.042 22.349 25.973 Atomic orbital electron populations 1.20459 0.85179 1.03993 1.04227 1.27051 1.01847 0.90466 1.02928 1.66007 1.04249 1.31177 1.14577 1.19591 0.90086 0.93046 1.01347 1.20283 0.97606 0.93513 0.99375 1.20243 0.82480 0.81332 0.86257 1.90805 1.28937 1.72349 1.46101 1.47959 1.32462 1.25137 1.29960 1.21793 0.89573 1.01278 0.93916 1.21575 0.99102 0.91461 0.88071 1.22256 0.99470 0.97126 0.98968 1.20168 0.94400 0.90011 0.87364 0.92867 1.42885 1.61766 1.30279 1.04025 1.19054 1.26782 1.08793 0.81717 0.88976 1.24604 1.00651 0.98553 0.95178 1.69702 1.48392 1.41124 0.99237 0.86706 0.80736 0.84670 0.77678 1.21367 1.22098 1.19321 1.21744 0.99307 0.97016 0.95193 1.21914 1.00252 0.99478 0.98623 1.21839 1.00713 0.97983 0.99187 1.26699 1.03121 0.95651 1.14545 1.83844 0.97989 1.13319 1.69078 0.89348 0.90219 0.89171 0.87527 0.87393 0.92704 0.91475 0.90861 0.88878 0.90814 0.91818 0.92033 0.80333 0.93275 0.92435 0.93202 0.93802 0.93313 0.89324 0.95295 0.93913 0.80655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.46 36.00 0.38 -0.35 16 2 C 0.06 0.70 7.39 -13.46 -0.10 0.60 16 3 N -0.45 -6.76 9.68 -8.06 -0.08 -6.84 16 4 C 0.09 1.20 5.64 -84.22 -0.47 0.72 16 5 C -0.07 -0.70 4.75 -29.03 -0.14 -0.84 16 6 C 0.51 7.85 7.64 -10.99 -0.08 7.77 16 7 O -0.51 -10.64 15.02 5.56 0.08 -10.56 16 8 N -0.62 -8.28 2.87 -181.56 -0.52 -8.80 16 9 C 0.08 0.63 10.29 59.85 0.62 1.25 16 10 C 0.12 1.94 5.34 -4.04 -0.02 1.92 16 11 C -0.14 -2.29 4.86 -26.73 -0.13 -2.42 16 12 C 0.19 3.67 2.02 -67.93 -0.14 3.53 16 13 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 14 N -0.75 -17.89 4.26 -53.42 -0.23 -18.12 16 15 C -0.23 -6.51 8.04 -15.06 -0.12 -6.63 16 16 H 0.09 2.72 7.60 -52.48 -0.40 2.32 16 17 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 18 N -0.94 -29.83 13.97 55.49 0.78 -29.06 16 19 Si 0.87 23.59 27.73 -169.99 -4.71 18.88 16 20 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 21 H -0.29 -8.09 7.11 56.52 0.40 -7.68 16 22 H -0.27 -7.26 6.52 56.52 0.37 -6.89 16 23 C -0.11 -1.99 2.69 -90.62 -0.24 -2.24 16 24 C -0.14 -2.07 8.85 37.16 0.33 -1.74 16 25 C -0.14 -2.73 8.25 37.16 0.31 -2.43 16 26 C -0.26 -2.76 11.07 29.12 0.32 -2.44 16 27 S 0.10 1.04 23.18 -107.50 -2.49 -1.46 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.11 0.78 7.29 -51.93 -0.38 0.40 16 32 H 0.11 0.95 8.11 -51.93 -0.42 0.53 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.38 6.44 -51.92 -0.33 0.05 16 35 H 0.07 0.53 7.89 -51.93 -0.41 0.12 16 36 H 0.09 1.92 7.03 -51.93 -0.37 1.56 16 37 H 0.07 1.07 7.89 -51.93 -0.41 0.66 16 38 H 0.06 0.89 6.18 -51.93 -0.32 0.57 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.36 9.16 5.66 -40.82 -0.23 8.93 16 41 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 45 H 0.05 0.63 6.32 -51.93 -0.33 0.30 16 46 H 0.09 2.07 5.99 -51.93 -0.31 1.76 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 402.52 15.07 6.07 6.07 Total: -1.00 -36.78 402.52 -8.85 -45.63 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -8.15 Total: 7.49 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 0.40 Total: -3.23 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -0.05 Total: -62.82 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -4.71 Total: 18.88 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.46 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.78 -8.85 -45.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282572942.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.192 kcal (2) G-P(sol) polarization free energy of solvation -36.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds