Wall clock time and date at job start Tue Mar 31 2020 22:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30946 * 122.90451 * 2 1 4 4 C 1.29426 * 117.36428 * 180.34926 * 3 2 1 5 5 C 1.50702 * 124.80409 * 179.73513 * 4 3 2 6 6 C 1.52996 * 109.47313 * 59.97117 * 5 4 3 7 7 C 1.53001 * 109.46699 * 179.97438 * 5 4 3 8 8 C 1.53000 * 109.46588 * 299.97096 * 5 4 3 9 9 S 1.70952 * 110.38879 * 359.70787 * 4 3 2 10 10 C 1.35662 * 122.90550 * 179.81385 * 2 1 3 11 11 C 1.46684 * 126.12904 * 359.95728 * 10 2 1 12 12 O 1.21684 * 119.99947 * 6.95413 * 11 10 2 13 13 N 1.34781 * 119.99837 * 186.95435 * 11 10 2 14 14 C 1.46503 * 119.99940 * 5.88492 * 13 11 10 15 15 C 1.46497 * 119.99782 * 185.88542 * 13 11 10 16 16 C 1.53001 * 109.46993 * 269.99554 * 15 13 11 17 17 H 1.09000 * 109.46982 * 65.00076 * 16 15 13 18 18 C 1.52998 * 109.47281 * 185.00002 * 16 15 13 19 19 N 1.46498 * 109.47354 * 305.00008 * 16 15 13 20 20 C 1.36940 * 120.00037 * 154.99442 * 19 16 15 21 21 H 1.08001 * 119.99670 * 0.02562 * 20 19 16 22 22 C 1.38812 * 119.99845 * 180.02562 * 20 19 16 23 23 N 1.31611 * 120.00125 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99634 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47123 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47039 * 120.00091 * 24 22 20 27 27 H 1.48494 * 109.47177 * 239.99711 * 24 22 20 28 28 H 1.08998 * 109.47039 * 270.18780 * 1 2 3 29 29 H 1.08994 * 109.47623 * 30.19115 * 1 2 3 30 30 H 1.09002 * 109.47038 * 150.19263 * 1 2 3 31 31 H 1.09001 * 109.47109 * 59.99980 * 6 5 4 32 32 H 1.08996 * 109.46919 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47278 * 300.00460 * 6 5 4 34 34 H 1.09005 * 109.47439 * 60.00074 * 7 5 4 35 35 H 1.09005 * 109.46733 * 179.97438 * 7 5 4 36 36 H 1.08993 * 109.47611 * 299.99275 * 7 5 4 37 37 H 1.08996 * 109.47489 * 60.00580 * 8 5 4 38 38 H 1.09005 * 109.46778 * 180.02562 * 8 5 4 39 39 H 1.08997 * 109.47329 * 300.00190 * 8 5 4 40 40 H 1.09003 * 109.46692 * 275.97647 * 14 13 11 41 41 H 1.09000 * 109.47095 * 35.97166 * 14 13 11 42 42 H 1.08996 * 109.47141 * 155.98269 * 14 13 11 43 43 H 1.08996 * 109.47588 * 29.99972 * 15 13 11 44 44 H 1.09005 * 109.47231 * 149.99943 * 15 13 11 45 45 H 1.09001 * 109.47274 * 300.00730 * 18 16 15 46 46 H 1.09000 * 109.47052 * 60.00117 * 18 16 15 47 47 H 1.09001 * 109.47295 * 179.97438 * 18 16 15 48 48 H 0.96996 * 120.00120 * 335.00666 * 19 16 15 49 49 H 0.97003 * 120.00199 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5065 0.9744 -0.0070 5 6 4.4821 2.1231 -0.0139 6 6 4.2691 2.9807 1.2350 7 6 5.9117 1.5778 -0.0205 8 6 4.2560 2.9766 -1.2634 9 16 3.9447 -0.6780 -0.0066 10 6 2.2440 -1.1390 0.0037 11 6 1.7191 -2.5087 0.0090 12 8 0.5245 -2.7030 -0.1171 13 7 2.5601 -3.5520 0.1537 14 6 3.9785 -3.3161 0.4342 15 6 2.0557 -4.9219 0.0302 16 6 1.6045 -5.4248 1.4030 17 1 0.7545 -4.8342 1.7449 18 6 1.1947 -6.8951 1.2981 19 7 2.7071 -5.2922 2.3583 20 6 2.4431 -5.1780 3.6972 21 1 1.4220 -5.1861 4.0488 22 6 3.4879 -5.0518 4.6023 23 7 4.7323 -5.0414 4.1738 24 14 3.1277 -4.8967 6.4287 25 1 1.6596 -4.9361 6.6488 26 1 3.7673 -6.0221 7.1567 27 1 3.6700 -3.6095 6.9327 28 1 -0.3633 0.0034 1.0276 29 1 -0.3634 0.8882 -0.5168 30 1 -0.3633 -0.8917 -0.5108 31 1 4.4301 2.3726 2.1252 32 1 4.9744 3.8117 1.2297 33 1 3.2506 3.3690 1.2397 34 1 6.0635 0.9668 -0.9104 35 1 6.6173 2.4086 -0.0260 36 1 6.0728 0.9698 0.8696 37 1 3.2376 3.3650 -1.2588 38 1 4.9619 3.8071 -1.2687 39 1 4.4077 2.3656 -2.1532 40 1 4.5083 -3.1336 -0.5007 41 1 4.0806 -2.4478 1.0852 42 1 4.4019 -4.1914 0.9268 43 1 1.2108 -4.9374 -0.6581 44 1 2.8469 -5.5674 -0.3511 45 1 0.3743 -6.9939 0.5872 46 1 2.0447 -7.4857 0.9562 47 1 0.8737 -7.2535 2.2761 48 1 3.6242 -5.2851 2.0426 49 1 5.4624 -4.9528 4.8062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283723065.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:44 Heat of formation + Delta-G solvation = 12.657349 kcal Electronic energy + Delta-G solvation = -28471.713547 eV Core-core repulsion = 24753.938591 eV Total energy + Delta-G solvation = -3717.774956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.29863 -39.30883 -36.97402 -36.22834 -34.33293 -32.15775 -31.20305 -29.05883 -28.30295 -27.66946 -27.47152 -26.99543 -25.45817 -24.77992 -23.61190 -21.26022 -20.11723 -19.88129 -18.21039 -17.80710 -17.30631 -16.39039 -15.90562 -15.59063 -15.07939 -14.88603 -14.55966 -14.18408 -14.01934 -13.91007 -13.66374 -13.33849 -13.24562 -12.85958 -12.74628 -12.57449 -12.40510 -12.26223 -12.20246 -12.11769 -11.89972 -11.82634 -11.60213 -11.48059 -11.32123 -11.23354 -11.18166 -11.06143 -10.87942 -10.72022 -10.41413 -10.05900 -9.73513 -9.60355 -9.38144 -9.17617 -8.95310 -8.67054 -8.15752 -6.97289 -5.80545 -3.06960 0.41118 1.34516 1.76871 2.60345 3.23425 3.41146 3.47491 3.48508 3.49804 3.87367 4.52902 4.57906 4.66718 4.74554 4.81992 5.11806 5.23107 5.32102 5.37281 5.39811 5.46730 5.50026 5.52059 5.56665 5.62850 5.66192 5.69363 5.70135 5.81590 5.83359 5.84877 5.95056 5.99412 6.06834 6.07272 6.10808 6.18251 6.25239 6.31060 6.48998 6.64768 6.74884 6.85994 7.12967 7.59794 7.71413 7.80371 8.38710 8.40599 9.50715 10.05902 10.41582 11.42710 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.003909 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.499925 B = 7160.919515 C = 8331.565521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.144 3.856 3 N -0.480 5.480 4 C 0.037 3.963 5 C 0.009 3.991 6 C -0.135 4.135 7 C -0.156 4.156 8 C -0.132 4.132 9 S 0.201 5.799 10 C -0.300 4.300 11 C 0.597 3.403 12 O -0.532 6.532 13 N -0.589 5.589 14 C 0.071 3.929 15 C 0.114 3.886 16 C 0.153 3.847 17 H 0.054 0.946 18 C -0.162 4.162 19 N -0.721 5.721 20 C -0.229 4.229 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.936 5.936 24 Si 0.902 3.098 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.293 1.293 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.039 0.961 46 H 0.046 0.954 47 H 0.056 0.944 48 H 0.380 0.620 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 12.581 -13.181 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.006 3.994 3 N -0.194 5.194 4 C -0.238 4.238 5 C 0.006 3.994 6 C -0.194 4.194 7 C -0.214 4.214 8 C -0.191 4.191 9 S 0.462 5.538 10 C -0.424 4.424 11 C 0.384 3.616 12 O -0.412 6.412 13 N -0.319 5.319 14 C -0.074 4.074 15 C -0.009 4.009 16 C 0.043 3.957 17 H 0.072 0.928 18 C -0.222 4.222 19 N -0.364 5.364 20 C -0.361 4.361 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.586 5.586 24 Si 0.734 3.266 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.220 1.220 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.124 0.876 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.215 0.785 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.171 12.463 -13.086 18.201 hybrid contribution -0.548 0.036 1.243 1.359 sum 1.624 12.499 -11.843 17.295 Atomic orbital electron populations 1.20644 0.86393 1.04209 1.03535 1.20550 0.98385 0.85132 0.95352 1.65994 1.04614 1.31532 1.17247 1.27791 0.94588 1.00594 1.00782 1.19241 0.91370 0.90861 0.97967 1.21841 1.02805 0.99015 0.95705 1.22053 0.94457 1.01970 1.02966 1.21823 1.02804 0.98989 0.95502 1.84406 1.05159 0.98759 1.65448 1.25519 0.96531 0.99212 1.21151 1.16675 0.85747 0.82400 0.76770 1.90721 1.14326 1.84639 1.51527 1.47401 1.09005 1.06164 1.69350 1.22019 0.80925 1.04334 1.00093 1.21902 0.99647 0.80437 0.98942 1.20671 0.92649 0.93695 0.88703 0.92782 1.22365 0.99678 0.99166 1.01037 1.42456 1.03390 1.87789 1.02724 1.19285 0.92626 1.41060 0.83082 0.91310 1.24644 0.95242 1.03232 0.97747 1.69625 0.97560 1.58173 1.33199 0.86175 0.77360 0.77192 0.85880 1.20636 1.21918 1.21984 0.90440 0.91222 0.88035 0.92292 0.91691 0.91475 0.91784 0.90655 0.91475 0.91485 0.91691 0.92573 0.92857 0.90722 0.87643 0.89934 0.90666 0.94240 0.93475 0.92514 0.78508 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 9.78 36.01 0.35 -0.95 16 2 C 0.14 2.34 6.79 -83.89 -0.57 1.77 16 3 N -0.48 -7.27 10.48 -7.70 -0.08 -7.35 16 4 C 0.04 0.49 5.78 -13.29 -0.08 0.41 16 5 C 0.01 0.09 0.99 -155.66 -0.15 -0.06 16 6 C -0.13 -1.31 8.45 37.16 0.31 -0.99 16 7 C -0.16 -1.30 7.53 37.16 0.28 -1.02 16 8 C -0.13 -1.15 8.45 37.16 0.31 -0.84 16 9 S 0.20 2.71 16.49 -107.50 -1.77 0.94 16 10 C -0.30 -5.03 6.20 -37.09 -0.23 -5.26 16 11 C 0.60 11.05 7.61 -12.85 -0.10 10.95 16 12 O -0.53 -10.74 13.90 5.20 0.07 -10.66 16 13 N -0.59 -10.27 2.73 -183.12 -0.50 -10.77 16 14 C 0.07 1.14 8.37 59.85 0.50 1.64 16 15 C 0.11 1.92 4.98 -4.04 -0.02 1.90 16 16 C 0.15 3.09 3.20 -67.93 -0.22 2.87 16 17 H 0.05 1.23 8.08 -51.93 -0.42 0.81 16 18 C -0.16 -2.90 9.49 37.16 0.35 -2.55 16 19 N -0.72 -17.27 4.57 -53.43 -0.24 -17.52 16 20 C -0.23 -6.27 9.93 -15.06 -0.15 -6.42 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.94 -26.88 13.06 55.49 0.72 -26.16 16 24 Si 0.90 22.38 29.55 -169.99 -5.02 17.35 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 1.59 5.87 -51.93 -0.30 1.29 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.68 7.53 -51.93 -0.39 0.29 16 41 H 0.07 1.27 5.16 -28.66 -0.15 1.12 16 42 H 0.11 1.86 5.79 -51.93 -0.30 1.56 16 43 H 0.08 1.33 7.51 -51.93 -0.39 0.94 16 44 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.38 9.26 5.41 -40.82 -0.22 9.04 16 49 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 398.26 15.07 6.00 6.00 Total: -1.00 -31.48 398.26 -8.36 -39.84 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -8.04 Total: 7.35 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 0.50 Total: 0.99 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.10 Total: -61.80 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.77 Total: 0.94 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.48 -8.36 -39.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283723065.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.496 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds