Wall clock time and date at job start Tue Mar 31 2020 22:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30946 * 122.90451 * 2 1 4 4 C 1.29426 * 117.36428 * 180.34926 * 3 2 1 5 5 C 1.50702 * 124.80409 * 179.73513 * 4 3 2 6 6 C 1.52996 * 109.47313 * 59.97117 * 5 4 3 7 7 C 1.53001 * 109.46699 * 179.97438 * 5 4 3 8 8 C 1.53000 * 109.46588 * 299.97096 * 5 4 3 9 9 S 1.70952 * 110.38879 * 359.70787 * 4 3 2 10 10 C 1.35662 * 122.90550 * 179.81385 * 2 1 3 11 11 C 1.46684 * 126.12904 * 359.95728 * 10 2 1 12 12 O 1.21684 * 119.99947 * 6.95413 * 11 10 2 13 13 N 1.34781 * 119.99837 * 186.95435 * 11 10 2 14 14 C 1.46503 * 119.99940 * 5.88492 * 13 11 10 15 15 C 1.46497 * 119.99782 * 185.88542 * 13 11 10 16 16 C 1.53001 * 109.46993 * 269.99554 * 15 13 11 17 17 H 1.09000 * 109.46982 * 65.00076 * 16 15 13 18 18 C 1.52998 * 109.47281 * 185.00002 * 16 15 13 19 19 N 1.46498 * 109.47354 * 305.00008 * 16 15 13 20 20 C 1.36940 * 120.00037 * 154.99442 * 19 16 15 21 21 H 1.08001 * 119.99670 * 0.02562 * 20 19 16 22 22 C 1.38812 * 119.99845 * 180.02562 * 20 19 16 23 23 N 1.31611 * 120.00125 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99634 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47123 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47039 * 120.00091 * 24 22 20 27 27 H 1.48494 * 109.47177 * 239.99711 * 24 22 20 28 28 H 1.08998 * 109.47039 * 270.18780 * 1 2 3 29 29 H 1.08994 * 109.47623 * 30.19115 * 1 2 3 30 30 H 1.09002 * 109.47038 * 150.19263 * 1 2 3 31 31 H 1.09001 * 109.47109 * 59.99980 * 6 5 4 32 32 H 1.08996 * 109.46919 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47278 * 300.00460 * 6 5 4 34 34 H 1.09005 * 109.47439 * 60.00074 * 7 5 4 35 35 H 1.09005 * 109.46733 * 179.97438 * 7 5 4 36 36 H 1.08993 * 109.47611 * 299.99275 * 7 5 4 37 37 H 1.08996 * 109.47489 * 60.00580 * 8 5 4 38 38 H 1.09005 * 109.46778 * 180.02562 * 8 5 4 39 39 H 1.08997 * 109.47329 * 300.00190 * 8 5 4 40 40 H 1.09003 * 109.46692 * 275.97647 * 14 13 11 41 41 H 1.09000 * 109.47095 * 35.97166 * 14 13 11 42 42 H 1.08996 * 109.47141 * 155.98269 * 14 13 11 43 43 H 1.08996 * 109.47588 * 29.99972 * 15 13 11 44 44 H 1.09005 * 109.47231 * 149.99943 * 15 13 11 45 45 H 1.09001 * 109.47274 * 300.00730 * 18 16 15 46 46 H 1.09000 * 109.47052 * 60.00117 * 18 16 15 47 47 H 1.09001 * 109.47295 * 179.97438 * 18 16 15 48 48 H 0.96996 * 120.00120 * 335.00666 * 19 16 15 49 49 H 0.97003 * 120.00199 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5065 0.9744 -0.0070 5 6 4.4821 2.1231 -0.0139 6 6 4.2691 2.9807 1.2350 7 6 5.9117 1.5778 -0.0205 8 6 4.2560 2.9766 -1.2634 9 16 3.9447 -0.6780 -0.0066 10 6 2.2440 -1.1390 0.0037 11 6 1.7191 -2.5087 0.0090 12 8 0.5245 -2.7030 -0.1171 13 7 2.5601 -3.5520 0.1537 14 6 3.9785 -3.3161 0.4342 15 6 2.0557 -4.9219 0.0302 16 6 1.6045 -5.4248 1.4030 17 1 0.7545 -4.8342 1.7449 18 6 1.1947 -6.8951 1.2981 19 7 2.7071 -5.2922 2.3583 20 6 2.4431 -5.1780 3.6972 21 1 1.4220 -5.1861 4.0488 22 6 3.4879 -5.0518 4.6023 23 7 4.7323 -5.0414 4.1738 24 14 3.1277 -4.8967 6.4287 25 1 1.6596 -4.9361 6.6488 26 1 3.7673 -6.0221 7.1567 27 1 3.6700 -3.6095 6.9327 28 1 -0.3633 0.0034 1.0276 29 1 -0.3634 0.8882 -0.5168 30 1 -0.3633 -0.8917 -0.5108 31 1 4.4301 2.3726 2.1252 32 1 4.9744 3.8117 1.2297 33 1 3.2506 3.3690 1.2397 34 1 6.0635 0.9668 -0.9104 35 1 6.6173 2.4086 -0.0260 36 1 6.0728 0.9698 0.8696 37 1 3.2376 3.3650 -1.2588 38 1 4.9619 3.8071 -1.2687 39 1 4.4077 2.3656 -2.1532 40 1 4.5083 -3.1336 -0.5007 41 1 4.0806 -2.4478 1.0852 42 1 4.4019 -4.1914 0.9268 43 1 1.2108 -4.9374 -0.6581 44 1 2.8469 -5.5674 -0.3511 45 1 0.3743 -6.9939 0.5872 46 1 2.0447 -7.4857 0.9562 47 1 0.8737 -7.2535 2.2761 48 1 3.6242 -5.2851 2.0426 49 1 5.4624 -4.9528 4.8062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283723065.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:44 Heat of formation + Delta-G solvation = -6.000288 kcal Electronic energy + Delta-G solvation = -28472.522603 eV Core-core repulsion = 24753.938591 eV Total energy + Delta-G solvation = -3718.584012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.52381 -40.58591 -38.08801 -37.56963 -35.95054 -34.03452 -32.38560 -30.83320 -29.64739 -28.44132 -28.27292 -28.18826 -26.82607 -25.94020 -25.50515 -22.65232 -21.43649 -21.02737 -19.50274 -19.33004 -18.91399 -17.68071 -17.16178 -16.91772 -16.58974 -16.15850 -15.94236 -15.60654 -15.22669 -15.03130 -14.95573 -14.80325 -14.45884 -14.11793 -13.94562 -13.90718 -13.74344 -13.54804 -13.21285 -13.12434 -13.11156 -12.96780 -12.84162 -12.76498 -12.61856 -12.52197 -12.50469 -12.25002 -12.18440 -11.97843 -11.92038 -11.89327 -11.65582 -11.08170 -10.93762 -10.54362 -10.33631 -9.93252 -9.47273 -8.95857 -7.94332 -5.19066 -0.76061 0.21849 0.63564 1.38157 1.42785 1.44945 1.52850 1.90008 2.14573 2.54653 2.89095 3.39786 3.50600 3.67260 3.85208 3.93195 3.93672 4.01196 4.08809 4.11936 4.27417 4.36573 4.42344 4.63615 4.65406 4.67406 4.69642 4.72674 4.73905 4.80641 4.83925 4.85079 4.85761 4.95400 4.96265 5.03491 5.10162 5.20259 5.26273 5.27693 5.34166 5.35169 5.40489 5.52069 5.62991 6.22937 6.31023 6.64368 7.00595 7.37206 8.09360 8.38034 9.28514 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.003909 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.499925 B = 7160.919515 C = 8331.565521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.137 3.863 3 N -0.497 5.497 4 C 0.043 3.957 5 C 0.005 3.995 6 C -0.133 4.133 7 C -0.157 4.157 8 C -0.128 4.128 9 S 0.238 5.762 10 C -0.340 4.340 11 C 0.590 3.410 12 O -0.560 6.560 13 N -0.592 5.592 14 C 0.074 3.926 15 C 0.119 3.881 16 C 0.152 3.848 17 H 0.022 0.978 18 C -0.151 4.151 19 N -0.725 5.725 20 C -0.234 4.234 21 H 0.058 0.942 22 C -0.061 4.061 23 N -0.957 5.957 24 Si 0.956 3.044 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.294 1.294 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.035 0.965 48 H 0.378 0.622 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 13.577 -14.179 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.002 4.002 3 N -0.211 5.211 4 C -0.231 4.231 5 C 0.001 3.999 6 C -0.192 4.192 7 C -0.215 4.215 8 C -0.187 4.187 9 S 0.500 5.500 10 C -0.463 4.463 11 C 0.378 3.622 12 O -0.442 6.442 13 N -0.322 5.322 14 C -0.070 4.070 15 C -0.004 4.004 16 C 0.042 3.958 17 H 0.040 0.960 18 C -0.212 4.212 19 N -0.368 5.368 20 C -0.366 4.366 21 H 0.076 0.924 22 C -0.254 4.254 23 N -0.608 5.608 24 Si 0.786 3.214 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.222 1.222 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.119 0.881 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.054 0.946 48 H 0.213 0.787 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.559 13.439 -14.102 19.803 hybrid contribution -0.983 -0.199 1.527 1.827 sum 2.576 13.240 -12.576 18.441 Atomic orbital electron populations 1.20591 0.86049 1.04439 1.03280 1.20817 0.99082 0.85479 0.94813 1.66070 1.05433 1.31035 1.18591 1.28550 0.94660 1.01595 0.98321 1.19518 0.91498 0.90009 0.98837 1.21846 1.02825 0.99597 0.94926 1.22098 0.93583 1.02947 1.02859 1.21812 1.02778 0.99515 0.94602 1.84102 1.02600 0.98563 1.64744 1.25512 0.98856 0.98523 1.23428 1.16973 0.85584 0.83267 0.76339 1.90690 1.15369 1.85259 1.52851 1.47507 1.09506 1.06180 1.69009 1.22035 0.80371 1.03100 1.01489 1.21883 1.00959 0.80628 0.96926 1.20789 0.90578 0.94819 0.89607 0.96000 1.22202 1.01081 0.97127 1.00762 1.42513 1.04251 1.87816 1.02222 1.19449 0.92131 1.40173 0.84836 0.92382 1.25227 0.95299 1.03979 1.00904 1.69724 0.97906 1.59246 1.33927 0.85338 0.77166 0.76796 0.82077 1.20340 1.21762 1.22173 0.90867 0.89382 0.89291 0.93513 0.88873 0.92840 0.91199 0.88068 0.92265 0.92858 0.89005 0.92468 0.89357 0.91870 0.89247 0.88905 0.88088 0.91282 0.92427 0.94602 0.78710 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.55 9.78 71.24 0.70 -1.85 16 2 C 0.14 4.50 6.79 42.09 0.29 4.79 16 3 N -0.50 -14.88 10.48 -178.29 -1.87 -16.75 16 4 C 0.04 1.08 5.78 88.46 0.51 1.59 16 5 C 0.01 0.09 0.99 -52.93 -0.05 0.04 16 6 C -0.13 -2.33 8.45 71.98 0.61 -1.72 16 7 C -0.16 -2.15 7.53 71.98 0.54 -1.61 16 8 C -0.13 -1.91 8.45 71.98 0.61 -1.30 16 9 S 0.24 6.19 16.49 -56.49 -0.93 5.25 16 10 C -0.34 -11.45 6.20 23.88 0.15 -11.30 16 11 C 0.59 22.14 7.61 86.45 0.66 22.80 16 12 O -0.56 -23.20 13.90 -4.30 -0.06 -23.26 16 13 N -0.59 -20.52 2.73 -851.50 -2.32 -22.84 16 14 C 0.07 2.33 8.37 127.77 1.07 3.40 16 15 C 0.12 3.91 4.98 86.38 0.43 4.34 16 16 C 0.15 6.11 3.20 44.99 0.14 6.26 16 17 H 0.02 1.02 8.08 -2.39 -0.02 1.00 16 18 C -0.15 -5.28 9.49 71.98 0.68 -4.60 16 19 N -0.72 -35.04 4.57 -322.94 -1.47 -36.52 16 20 C -0.23 -12.94 9.93 84.03 0.83 -12.11 16 21 H 0.06 3.28 7.83 -2.91 -0.02 3.26 16 22 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 23 N -0.96 -55.14 13.06 21.65 0.28 -54.86 16 24 Si 0.96 46.27 29.55 68.60 2.03 48.30 16 25 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 27 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.09 2.90 5.87 -2.39 -0.01 2.89 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 0.88 7.92 -2.38 -0.02 0.87 16 35 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.06 0.92 7.92 -2.39 -0.02 0.90 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 2.10 7.53 -2.39 -0.02 2.08 16 41 H 0.06 2.13 5.16 -17.18 -0.09 2.04 16 42 H 0.09 3.12 5.79 -2.39 -0.01 3.11 16 43 H 0.09 2.89 7.51 -2.39 -0.02 2.87 16 44 H 0.10 2.81 8.07 -2.38 -0.02 2.79 16 45 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 48 H 0.38 18.49 5.41 -92.71 -0.50 17.99 16 49 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -68.55 398.26 3.65 -64.90 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.36 Total: 30.01 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 7.63 Total: 5.76 kcal Atomic # 7 Polarization: -125.58 SS G_CDS: -5.38 Total: -130.97 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.06 Total: -23.26 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 16 Polarization: 6.19 SS G_CDS: -0.93 Total: 5.25 kcal Total: -68.55 3.65 -64.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283723065.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.902 kcal (2) G-P(sol) polarization free energy of solvation -68.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds