Wall clock time and date at job start Tue Mar 31 2020 22:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29434 * 124.80108 * 2 1 4 4 C 1.30942 * 117.36033 * 179.97438 * 3 2 1 5 5 C 1.50702 * 122.90138 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47162 * 90.02736 * 5 4 3 7 7 C 1.53000 * 109.47167 * 174.99910 * 6 5 4 8 8 C 1.53006 * 109.47178 * 294.99482 * 6 5 4 9 9 C 1.35659 * 114.19387 * 0.02562 * 4 3 2 10 10 C 1.46681 * 126.13303 * 180.02562 * 9 4 3 11 11 O 1.21691 * 119.99756 * 359.97178 * 10 9 4 12 12 N 1.34776 * 120.00456 * 179.97438 * 10 9 4 13 13 C 1.46494 * 120.00373 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47296 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47163 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.47037 * 55.00875 * 15 14 13 17 17 C 1.53003 * 109.47178 * 175.00225 * 15 14 13 18 18 N 1.46493 * 109.47260 * 295.00517 * 15 14 13 19 19 C 1.36944 * 119.99903 * 155.00119 * 18 15 14 20 20 H 1.07996 * 119.99949 * 359.97438 * 19 18 15 21 21 C 1.38810 * 119.99907 * 179.97438 * 19 18 15 22 22 N 1.31625 * 120.00059 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99973 * 179.97438 * 21 19 18 24 24 H 1.48488 * 109.46979 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47193 * 120.00259 * 23 21 19 26 26 H 1.48505 * 109.46986 * 239.99776 * 23 21 19 27 27 S 1.70945 * 124.80720 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47022 * 89.99947 * 1 2 3 29 29 H 1.08991 * 109.47254 * 209.99757 * 1 2 3 30 30 H 1.08999 * 109.47306 * 330.00136 * 1 2 3 31 31 H 1.09000 * 109.46956 * 210.02515 * 5 4 3 32 32 H 1.08998 * 109.47184 * 330.02289 * 5 4 3 33 33 H 1.08994 * 109.47775 * 54.99867 * 6 5 4 34 34 H 1.09006 * 109.47042 * 59.99694 * 7 6 5 35 35 H 1.09007 * 109.47510 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.46966 * 299.99951 * 7 6 5 37 37 H 1.08994 * 109.47465 * 180.02562 * 8 6 5 38 38 H 1.08994 * 109.47082 * 300.00810 * 8 6 5 39 39 H 1.09009 * 109.46701 * 59.99809 * 8 6 5 40 40 H 0.96998 * 119.99877 * 359.97438 * 12 10 9 41 41 H 1.09004 * 109.47721 * 300.00538 * 13 12 10 42 42 H 1.09005 * 109.46722 * 60.00258 * 13 12 10 43 43 H 1.08997 * 109.47391 * 300.00325 * 14 13 12 44 44 H 1.09005 * 109.46816 * 60.00571 * 14 13 12 45 45 H 1.08994 * 109.47111 * 180.02562 * 17 15 14 46 46 H 1.09003 * 109.46996 * 300.00729 * 17 15 14 47 47 H 1.08996 * 109.46790 * 60.00092 * 17 15 14 48 48 H 0.96996 * 120.00173 * 334.99355 * 18 15 14 49 49 H 0.96996 * 119.99856 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 0.0005 5 6 4.5197 2.0419 0.0012 6 6 4.8498 2.4299 1.4438 7 6 5.9327 3.5107 1.4463 8 6 3.5912 2.9675 2.1281 9 6 3.9352 -0.4058 0.0004 10 6 5.3189 -0.8925 0.0015 11 8 6.2425 -0.1002 0.0020 12 7 5.5674 -2.2171 0.0018 13 6 6.9493 -2.7032 0.0022 14 6 6.9518 -4.2332 0.0032 15 6 8.3952 -4.7408 0.0043 16 1 8.9330 -4.3049 0.8463 17 6 8.3994 -6.2656 0.1309 18 7 9.0503 -4.3529 -1.2473 19 6 10.4126 -4.2219 -1.2950 20 1 11.0039 -4.4042 -0.4099 21 6 11.0334 -3.8548 -2.4811 22 7 10.3126 -3.6322 -3.5597 23 14 12.8916 -3.6754 -2.5460 24 1 13.4650 -3.9771 -1.2100 25 1 13.4455 -4.6210 -3.5480 26 1 13.2414 -2.2846 -2.9318 27 16 2.4828 -1.4036 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 5.4333 1.7429 -0.5127 32 1 4.0766 2.8952 -0.5123 33 1 5.2100 1.5535 1.9825 34 1 5.5725 4.3872 0.9076 35 1 6.1676 3.7875 2.4741 36 1 6.8293 3.1278 0.9588 37 1 3.8264 3.2444 3.1557 38 1 3.2310 3.8439 1.5894 39 1 2.8197 2.1975 2.1263 40 1 4.8311 -2.8487 0.0017 41 1 7.4629 -2.3392 -0.8876 42 1 7.4623 -2.3389 0.8924 43 1 6.4384 -4.5969 0.8932 44 1 6.4387 -4.5979 -0.8868 45 1 9.4276 -6.6272 0.1321 46 1 7.9119 -6.5542 1.0621 47 1 7.8616 -6.7015 -0.7110 48 1 8.5191 -4.1889 -2.0421 49 1 10.7464 -3.3760 -4.3885 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317400096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:12 Heat of formation + Delta-G solvation = -9.491065 kcal Electronic energy + Delta-G solvation = -27152.894693 eV Core-core repulsion = 23434.159309 eV Total energy + Delta-G solvation = -3718.735384 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.65581 -39.12700 -36.63762 -36.14203 -34.40598 -32.67570 -32.23365 -29.81950 -28.97273 -28.29791 -27.34731 -27.11191 -23.97784 -23.37165 -22.93225 -21.38197 -20.33631 -20.05609 -19.25443 -18.17757 -17.26519 -16.81677 -15.83993 -15.67748 -15.23108 -15.01776 -14.70653 -14.62133 -14.11874 -14.03534 -13.92137 -13.57826 -13.50031 -13.06623 -13.01132 -12.77349 -12.67294 -12.51212 -12.29159 -12.06570 -11.83333 -11.69177 -11.55781 -11.11815 -11.01711 -10.95176 -10.92045 -10.75277 -10.66198 -10.61180 -10.28681 -10.10460 -9.96804 -9.70899 -9.68899 -9.62950 -9.02186 -8.90496 -8.79046 -6.94509 -5.74235 -3.03042 0.05262 0.93255 1.33712 2.28529 3.15814 3.20158 3.45733 3.51445 3.53566 3.72057 4.54443 4.61718 4.73128 4.86387 4.87577 4.91680 5.01152 5.09223 5.16323 5.27570 5.37692 5.42840 5.55909 5.57657 5.65650 5.67043 5.68297 5.73323 5.83412 5.86197 5.91620 6.03384 6.04906 6.16165 6.23515 6.28946 6.33476 6.35058 6.38192 6.45395 6.62496 6.68288 6.85554 7.05471 7.38600 7.54095 7.73450 8.21450 8.44017 9.55544 10.11841 10.46378 11.48433 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012454 B = 0.002671 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.795344 B =10479.055157 C =11815.058979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.059 3.941 3 N -0.472 5.472 4 C 0.155 3.845 5 C -0.054 4.054 6 C -0.082 4.082 7 C -0.144 4.144 8 C -0.144 4.144 9 C -0.291 4.291 10 C 0.591 3.409 11 O -0.514 6.514 12 N -0.722 5.722 13 C 0.123 3.877 14 C -0.133 4.133 15 C 0.175 3.825 16 H 0.050 0.950 17 C -0.163 4.163 18 N -0.724 5.724 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.292 1.292 27 S 0.149 5.851 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.393 0.607 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.035 0.965 47 H 0.046 0.954 48 H 0.383 0.617 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.641 7.024 10.632 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.217 4.217 3 N -0.187 5.187 4 C 0.018 3.982 5 C -0.094 4.094 6 C -0.101 4.101 7 C -0.201 4.201 8 C -0.201 4.201 9 C -0.415 4.415 10 C 0.375 3.625 11 O -0.391 6.391 12 N -0.373 5.373 13 C 0.001 3.999 14 C -0.172 4.172 15 C 0.065 3.935 16 H 0.068 0.932 17 C -0.224 4.224 18 N -0.366 5.366 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 S 0.406 5.594 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.226 0.774 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.054 0.946 47 H 0.065 0.935 48 H 0.217 0.783 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.274 6.985 10.666 25.665 hybrid contribution 0.969 0.325 -0.481 1.130 sum -21.305 7.310 10.185 24.720 Atomic orbital electron populations 1.20514 0.84761 1.04491 1.04249 1.27357 1.02006 0.91123 1.01217 1.66107 1.04443 1.31018 1.17115 1.20616 0.89697 0.93469 0.94446 1.20620 0.97016 0.93286 0.98432 1.20942 0.95698 0.98863 0.94568 1.21791 0.98672 0.98052 1.01612 1.21860 0.97425 1.01105 0.99714 1.25568 0.97995 0.97113 1.20777 1.16661 0.85823 0.82822 0.77198 1.90828 1.44049 1.54680 1.49550 1.46030 1.10187 1.05915 1.75169 1.21521 0.80124 0.94378 1.03873 1.22077 0.99708 0.93751 1.01676 1.20143 0.89795 0.92408 0.91196 0.93237 1.22425 1.01486 0.99278 0.99176 1.42464 1.04533 1.82161 1.07420 1.19259 0.83230 1.38728 0.95587 0.91159 1.24727 0.97742 1.02517 0.95920 1.69666 1.33963 1.53797 1.00631 0.86151 0.85710 0.77303 0.77242 1.20586 1.21980 1.21875 1.83810 0.96865 1.11771 1.66932 0.89154 0.89828 0.88959 0.87389 0.90392 0.91116 0.92825 0.92759 0.91932 0.93212 0.92663 0.92817 0.77394 0.89352 0.91459 0.91890 0.91556 0.92680 0.94574 0.93516 0.78294 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.46 36.01 0.38 -0.04 16 2 C 0.06 0.55 7.39 -13.29 -0.10 0.45 16 3 N -0.47 -5.57 9.64 -7.70 -0.07 -5.65 16 4 C 0.16 2.03 5.32 -83.89 -0.45 1.58 16 5 C -0.05 -0.69 4.50 -27.88 -0.13 -0.82 16 6 C -0.08 -0.96 2.91 -90.62 -0.26 -1.23 16 7 C -0.14 -1.55 9.19 37.16 0.34 -1.20 16 8 C -0.14 -1.50 8.97 37.16 0.33 -1.16 16 9 C -0.29 -3.83 6.48 -37.10 -0.24 -4.07 16 10 C 0.59 9.20 7.78 -12.85 -0.10 9.10 16 11 O -0.51 -9.60 14.27 5.20 0.07 -9.53 16 12 N -0.72 -10.16 5.55 -61.62 -0.34 -10.50 16 13 C 0.12 2.03 5.56 -4.05 -0.02 2.01 16 14 C -0.13 -2.02 4.87 -26.73 -0.13 -2.15 16 15 C 0.18 3.31 2.89 -67.93 -0.20 3.11 16 16 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 17 C -0.16 -2.82 9.49 37.16 0.35 -2.47 16 18 N -0.72 -17.59 4.57 -53.42 -0.24 -17.83 16 19 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 23 Si 0.90 22.62 29.55 -169.99 -5.02 17.60 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 S 0.15 1.39 22.31 -107.50 -2.40 -1.01 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.11 1.61 6.01 -51.93 -0.31 1.30 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.60 6.75 -51.92 -0.35 0.25 16 40 H 0.39 4.43 7.66 -40.82 -0.31 4.12 16 41 H 0.09 1.81 7.75 -51.93 -0.40 1.40 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 49 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 411.97 15.07 6.21 6.21 Total: -1.00 -32.39 411.97 -9.96 -42.35 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -8.43 Total: 9.86 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -0.46 Total: -4.01 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 0.06 Total: -61.48 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.40 Total: -1.01 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.39 -9.96 -42.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317400096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.862 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds