Wall clock time and date at job start Tue Mar 31 2020 22:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29434 * 124.80108 * 2 1 4 4 C 1.30942 * 117.36033 * 179.97438 * 3 2 1 5 5 C 1.50702 * 122.90138 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47162 * 90.02736 * 5 4 3 7 7 C 1.53000 * 109.47167 * 174.99910 * 6 5 4 8 8 C 1.53006 * 109.47178 * 294.99482 * 6 5 4 9 9 C 1.35659 * 114.19387 * 0.02562 * 4 3 2 10 10 C 1.46681 * 126.13303 * 180.02562 * 9 4 3 11 11 O 1.21691 * 119.99756 * 359.97178 * 10 9 4 12 12 N 1.34776 * 120.00456 * 179.97438 * 10 9 4 13 13 C 1.46494 * 120.00373 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47296 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47163 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.47037 * 55.00875 * 15 14 13 17 17 C 1.53003 * 109.47178 * 175.00225 * 15 14 13 18 18 N 1.46493 * 109.47260 * 295.00517 * 15 14 13 19 19 C 1.36944 * 119.99903 * 155.00119 * 18 15 14 20 20 H 1.07996 * 119.99949 * 359.97438 * 19 18 15 21 21 C 1.38810 * 119.99907 * 179.97438 * 19 18 15 22 22 N 1.31625 * 120.00059 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99973 * 179.97438 * 21 19 18 24 24 H 1.48488 * 109.46979 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47193 * 120.00259 * 23 21 19 26 26 H 1.48505 * 109.46986 * 239.99776 * 23 21 19 27 27 S 1.70945 * 124.80720 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47022 * 89.99947 * 1 2 3 29 29 H 1.08991 * 109.47254 * 209.99757 * 1 2 3 30 30 H 1.08999 * 109.47306 * 330.00136 * 1 2 3 31 31 H 1.09000 * 109.46956 * 210.02515 * 5 4 3 32 32 H 1.08998 * 109.47184 * 330.02289 * 5 4 3 33 33 H 1.08994 * 109.47775 * 54.99867 * 6 5 4 34 34 H 1.09006 * 109.47042 * 59.99694 * 7 6 5 35 35 H 1.09007 * 109.47510 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.46966 * 299.99951 * 7 6 5 37 37 H 1.08994 * 109.47465 * 180.02562 * 8 6 5 38 38 H 1.08994 * 109.47082 * 300.00810 * 8 6 5 39 39 H 1.09009 * 109.46701 * 59.99809 * 8 6 5 40 40 H 0.96998 * 119.99877 * 359.97438 * 12 10 9 41 41 H 1.09004 * 109.47721 * 300.00538 * 13 12 10 42 42 H 1.09005 * 109.46722 * 60.00258 * 13 12 10 43 43 H 1.08997 * 109.47391 * 300.00325 * 14 13 12 44 44 H 1.09005 * 109.46816 * 60.00571 * 14 13 12 45 45 H 1.08994 * 109.47111 * 180.02562 * 17 15 14 46 46 H 1.09003 * 109.46996 * 300.00729 * 17 15 14 47 47 H 1.08996 * 109.46790 * 60.00092 * 17 15 14 48 48 H 0.96996 * 120.00173 * 334.99355 * 18 15 14 49 49 H 0.96996 * 119.99856 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 0.0005 5 6 4.5197 2.0419 0.0012 6 6 4.8498 2.4299 1.4438 7 6 5.9327 3.5107 1.4463 8 6 3.5912 2.9675 2.1281 9 6 3.9352 -0.4058 0.0004 10 6 5.3189 -0.8925 0.0015 11 8 6.2425 -0.1002 0.0020 12 7 5.5674 -2.2171 0.0018 13 6 6.9493 -2.7032 0.0022 14 6 6.9518 -4.2332 0.0032 15 6 8.3952 -4.7408 0.0043 16 1 8.9330 -4.3049 0.8463 17 6 8.3994 -6.2656 0.1309 18 7 9.0503 -4.3529 -1.2473 19 6 10.4126 -4.2219 -1.2950 20 1 11.0039 -4.4042 -0.4099 21 6 11.0334 -3.8548 -2.4811 22 7 10.3126 -3.6322 -3.5597 23 14 12.8916 -3.6754 -2.5460 24 1 13.4650 -3.9771 -1.2100 25 1 13.4455 -4.6210 -3.5480 26 1 13.2414 -2.2846 -2.9318 27 16 2.4828 -1.4036 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 5.4333 1.7429 -0.5127 32 1 4.0766 2.8952 -0.5123 33 1 5.2100 1.5535 1.9825 34 1 5.5725 4.3872 0.9076 35 1 6.1676 3.7875 2.4741 36 1 6.8293 3.1278 0.9588 37 1 3.8264 3.2444 3.1557 38 1 3.2310 3.8439 1.5894 39 1 2.8197 2.1975 2.1263 40 1 4.8311 -2.8487 0.0017 41 1 7.4629 -2.3392 -0.8876 42 1 7.4623 -2.3389 0.8924 43 1 6.4384 -4.5969 0.8932 44 1 6.4387 -4.5979 -0.8868 45 1 9.4276 -6.6272 0.1321 46 1 7.9119 -6.5542 1.0621 47 1 7.8616 -6.7015 -0.7110 48 1 8.5191 -4.1889 -2.0421 49 1 10.7464 -3.3760 -4.3885 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317400096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:11 Heat of formation + Delta-G solvation = -30.489120 kcal Electronic energy + Delta-G solvation = -27153.805237 eV Core-core repulsion = 23434.159309 eV Total energy + Delta-G solvation = -3719.645928 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.62960 -40.27959 -38.15569 -37.09956 -35.88642 -34.18749 -33.38008 -31.28078 -30.18949 -29.51786 -28.40826 -27.99842 -25.87455 -24.49494 -24.00396 -22.58343 -21.58841 -21.17138 -20.42751 -19.27053 -19.06277 -17.89488 -17.08755 -16.84838 -16.66440 -16.10306 -15.96475 -15.58747 -15.54809 -15.33699 -15.18578 -14.80650 -14.51825 -14.40573 -14.15494 -13.86755 -13.58513 -13.35734 -13.25614 -13.24955 -13.13332 -12.86402 -12.76664 -12.64766 -12.56995 -12.31074 -12.22296 -12.10766 -11.90931 -11.87380 -11.64485 -11.60814 -11.59351 -11.12881 -10.95643 -10.73261 -10.59939 -10.19310 -9.72676 -8.97930 -7.92753 -5.19467 -0.82857 0.11909 0.49173 1.34379 1.45439 1.46943 1.55921 1.99270 2.05811 2.56869 2.96307 3.41765 3.66847 3.81737 3.87651 3.91536 3.96240 3.98540 4.11030 4.20547 4.26928 4.34636 4.55925 4.65684 4.67473 4.69759 4.69932 4.73706 4.79345 4.81428 4.87134 4.95890 4.97612 5.00411 5.07723 5.11283 5.17144 5.18133 5.28310 5.35868 5.38888 5.40833 5.43239 5.54535 5.61397 6.30394 6.34354 6.58956 7.05260 7.36403 8.14056 8.35217 9.31005 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012454 B = 0.002671 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.795344 B =10479.055157 C =11815.058979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.067 3.933 3 N -0.494 5.494 4 C 0.154 3.846 5 C -0.054 4.054 6 C -0.078 4.078 7 C -0.141 4.141 8 C -0.134 4.134 9 C -0.332 4.332 10 C 0.586 3.414 11 O -0.557 6.557 12 N -0.710 5.710 13 C 0.135 3.865 14 C -0.117 4.117 15 C 0.165 3.835 16 H 0.044 0.956 17 C -0.153 4.153 18 N -0.735 5.735 19 C -0.230 4.230 20 H 0.074 0.926 21 C -0.079 4.079 22 N -0.970 5.970 23 Si 0.965 3.035 24 H -0.266 1.266 25 H -0.294 1.294 26 H -0.299 1.299 27 S 0.209 5.791 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.409 0.591 41 H 0.041 0.959 42 H 0.057 0.943 43 H 0.105 0.895 44 H 0.072 0.928 45 H 0.033 0.967 46 H 0.076 0.924 47 H 0.045 0.955 48 H 0.372 0.628 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.434 6.120 12.357 28.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.208 4.208 3 N -0.210 5.210 4 C 0.016 3.984 5 C -0.093 4.093 6 C -0.097 4.097 7 C -0.198 4.198 8 C -0.191 4.191 9 C -0.456 4.456 10 C 0.373 3.627 11 O -0.438 6.438 12 N -0.362 5.362 13 C 0.012 3.988 14 C -0.156 4.156 15 C 0.057 3.943 16 H 0.062 0.938 17 C -0.213 4.213 18 N -0.376 5.376 19 C -0.362 4.362 20 H 0.092 0.908 21 C -0.271 4.271 22 N -0.621 5.621 23 Si 0.795 3.205 24 H -0.190 1.190 25 H -0.221 1.221 26 H -0.226 1.226 27 S 0.467 5.533 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.245 0.755 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.124 0.876 44 H 0.090 0.910 45 H 0.052 0.948 46 H 0.094 0.906 47 H 0.064 0.936 48 H 0.203 0.797 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -25.112 6.019 12.450 28.668 hybrid contribution 1.679 0.587 -0.945 2.014 sum -23.434 6.606 11.505 26.928 Atomic orbital electron populations 1.20791 0.81553 1.06124 1.05749 1.28208 1.03764 0.90691 0.98142 1.66175 1.03737 1.32110 1.18930 1.20660 0.90465 0.93413 0.93910 1.20536 0.96106 0.93812 0.98893 1.20888 0.96759 0.98287 0.93787 1.21768 0.97587 0.98122 1.02345 1.21765 0.96148 1.00975 1.00229 1.25366 0.98288 0.98407 1.23526 1.17057 0.86697 0.82749 0.76211 1.90804 1.45819 1.55714 1.51414 1.45801 1.09669 1.05949 1.74770 1.21176 0.81045 0.95484 1.01098 1.21941 0.97534 0.92136 1.03964 1.20441 0.91546 0.93815 0.88518 0.93807 1.22262 1.00690 0.97107 1.01252 1.42667 1.03671 1.82331 1.08943 1.19625 0.84890 1.36342 0.95326 0.90767 1.25482 1.01781 1.03815 0.95989 1.69815 1.35362 1.55982 1.00984 0.85177 0.81142 0.76511 0.77635 1.18999 1.22096 1.22649 1.83487 0.93859 1.10140 1.65850 0.87465 0.87223 0.88271 0.90232 0.89635 0.93458 0.91423 0.91554 0.93907 0.92070 0.91862 0.93541 0.75480 0.94074 0.92473 0.87632 0.90973 0.94775 0.90556 0.93612 0.79658 0.94324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.46 71.24 0.75 0.19 16 2 C 0.07 1.08 7.39 88.46 0.65 1.73 16 3 N -0.49 -11.06 9.64 -178.29 -1.72 -12.78 16 4 C 0.15 4.07 5.32 42.09 0.22 4.30 16 5 C -0.05 -1.46 4.50 29.85 0.13 -1.32 16 6 C -0.08 -1.91 2.91 -10.79 -0.03 -1.94 16 7 C -0.14 -3.12 9.19 71.98 0.66 -2.45 16 8 C -0.13 -2.68 8.97 71.98 0.65 -2.04 16 9 C -0.33 -8.77 6.48 23.88 0.15 -8.61 16 10 C 0.59 19.02 7.78 86.45 0.67 19.69 16 11 O -0.56 -22.48 14.27 -4.32 -0.06 -22.54 16 12 N -0.71 -20.01 5.55 -467.09 -2.59 -22.60 16 13 C 0.14 4.56 5.56 86.38 0.48 5.04 16 14 C -0.12 -3.36 4.87 30.59 0.15 -3.21 16 15 C 0.17 6.11 2.89 45.00 0.13 6.24 16 16 H 0.04 1.67 8.08 -2.39 -0.02 1.66 16 17 C -0.15 -4.96 9.49 71.98 0.68 -4.28 16 18 N -0.74 -36.36 4.57 -322.94 -1.48 -37.84 16 19 C -0.23 -12.80 9.93 84.03 0.83 -11.96 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 21 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 22 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 23 Si 0.97 47.50 29.55 68.60 2.03 49.52 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 27 S 0.21 3.42 22.31 -56.49 -1.26 2.16 16 28 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 2.61 6.01 -2.39 -0.01 2.60 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.05 1.00 6.75 -2.38 -0.02 0.98 16 40 H 0.41 8.60 7.66 -92.71 -0.71 7.89 16 41 H 0.04 1.79 7.75 -2.38 -0.02 1.77 16 42 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.11 2.19 8.14 -2.39 -0.02 2.18 16 44 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 45 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.37 19.93 7.80 -92.71 -0.72 19.20 16 49 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -74.38 411.97 1.32 -73.06 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: -0.48 Total: 34.19 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 6.60 Total: -2.77 kcal Atomic # 7 Polarization: -128.11 SS G_CDS: -5.51 Total: -133.62 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.06 Total: -22.54 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.52 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.26 Total: 2.16 kcal Total: -74.38 1.32 -73.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317400096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.573 kcal (2) G-P(sol) polarization free energy of solvation -74.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds