Wall clock time and date at job start Tue Mar 31 2020 23:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46670 * 130.25924 * 4 3 2 6 6 C 1.46947 * 111.00212 * 293.79697 * 5 4 3 7 7 C 1.53053 * 109.36624 * 176.81470 * 6 5 4 8 8 N 1.46952 * 109.36315 * 58.40153 * 7 6 5 9 9 C 1.46905 * 110.99968 * 176.81241 * 8 7 6 10 10 C 1.53001 * 109.47158 * 293.80088 * 9 8 7 11 11 N 1.46500 * 109.47048 * 179.97438 * 10 9 8 12 12 C 1.46502 * 119.99783 * 270.00003 * 11 10 9 13 13 C 1.34777 * 120.00127 * 89.99678 * 11 10 9 14 14 O 1.21280 * 119.99950 * 0.02562 * 13 11 10 15 15 C 1.50699 * 119.99997 * 179.97438 * 13 11 10 16 16 S 1.81000 * 109.47085 * 180.02562 * 15 13 11 17 17 C 1.76202 * 100.00039 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99902 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99975 * 180.02562 * 17 16 15 20 20 N 1.31637 * 119.99953 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99954 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47130 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47183 * 119.99735 * 21 19 17 24 24 H 1.48504 * 109.46768 * 239.99969 * 21 19 17 25 25 C 1.46958 * 110.88310 * 300.67874 * 8 7 6 26 26 C 1.46962 * 110.99604 * 170.00000 * 5 4 3 27 27 H 1.09001 * 109.47046 * 229.74167 * 1 2 3 28 28 H 1.08996 * 109.47170 * 349.73467 * 1 2 3 29 29 H 1.08992 * 109.47449 * 109.74243 * 1 2 3 30 30 H 1.08996 * 109.47366 * 250.26237 * 4 3 2 31 31 H 1.09000 * 109.47090 * 10.26048 * 4 3 2 32 32 H 1.08995 * 109.49326 * 296.78182 * 6 5 4 33 33 H 1.09001 * 109.48965 * 56.84707 * 6 5 4 34 34 H 1.08996 * 109.48803 * 298.43675 * 7 6 5 35 35 H 1.08997 * 109.49194 * 178.37373 * 7 6 5 36 36 H 1.08996 * 109.46700 * 53.80100 * 9 8 7 37 37 H 1.08998 * 109.47102 * 173.79674 * 9 8 7 38 38 H 1.09002 * 109.47001 * 299.99949 * 10 9 8 39 39 H 1.08995 * 109.46992 * 60.00028 * 10 9 8 40 40 H 1.09002 * 109.46869 * 90.00314 * 12 11 10 41 41 H 1.09000 * 109.46976 * 209.99770 * 12 11 10 42 42 H 1.09001 * 109.47211 * 329.99933 * 12 11 10 43 43 H 1.09000 * 109.47196 * 300.00094 * 15 13 11 44 44 H 1.08995 * 109.47467 * 60.00321 * 15 13 11 45 45 H 0.96995 * 119.99434 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.49311 * 299.35611 * 25 8 7 47 47 H 1.09000 * 109.48830 * 179.28622 * 25 8 7 48 48 H 1.09004 * 109.48585 * 303.15533 * 26 5 4 49 49 H 1.08996 * 109.48862 * 63.22185 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 7 4.6068 0.8974 -1.0570 6 6 4.2609 0.3793 -2.3879 7 6 4.7163 1.3773 -3.4551 8 7 6.1654 1.5903 -3.3364 9 6 6.6543 2.4858 -4.3933 10 6 6.5005 1.8015 -5.7531 11 7 6.9874 2.6948 -6.8072 12 6 6.0685 3.6363 -7.4518 13 6 8.2807 2.6505 -7.1839 14 8 9.0413 1.8708 -6.6505 15 6 8.7815 3.5690 -8.2686 16 16 10.5453 3.2710 -8.5449 17 6 10.8574 4.4440 -9.8222 18 1 10.0566 5.0693 -10.1885 19 6 12.1320 4.5635 -10.3584 20 7 13.1078 3.8009 -9.9122 21 14 12.4627 5.8065 -11.7130 22 1 11.2086 6.5341 -12.0340 23 1 13.4935 6.7732 -11.2568 24 1 12.9487 5.0998 -12.9253 25 6 6.5114 2.1084 -2.0054 26 6 6.0561 1.1103 -0.9382 27 1 -0.3633 -0.6641 0.7843 28 1 -0.3633 1.0112 0.1831 29 1 -0.3634 -0.3471 -0.9672 30 1 4.4811 0.3492 0.9672 31 1 4.4823 -1.0091 -0.1831 32 1 4.7601 -0.5764 -2.5472 33 1 3.1817 0.2418 -2.4554 34 1 4.1966 2.3247 -3.3123 35 1 4.4866 0.9818 -4.4445 36 1 6.0752 3.4092 -4.3837 37 1 7.7056 2.7144 -4.2184 38 1 7.0795 0.8780 -5.7627 39 1 5.4492 1.5730 -5.9280 40 1 6.0711 4.5789 -6.9044 41 1 6.3894 3.8117 -8.4786 42 1 5.0616 3.2188 -7.4520 43 1 8.2321 3.3765 -9.1901 44 1 8.6309 4.6051 -7.9656 45 1 13.9985 3.8842 -10.2872 46 1 6.0122 3.0641 -1.8461 47 1 7.5906 2.2458 -1.9380 48 1 6.2856 1.5059 0.0512 49 1 6.5757 0.1629 -1.0810 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317813582.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:41 Heat of formation + Delta-G solvation = 32.342918 kcal Electronic energy + Delta-G solvation = -26203.000360 eV Core-core repulsion = 22486.079034 eV Total energy + Delta-G solvation = -3716.921326 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.90829 -39.24452 -36.63389 -35.20203 -34.09806 -32.42303 -31.46455 -31.08207 -29.80617 -28.38864 -27.05952 -25.95677 -25.43929 -24.39028 -23.72655 -22.02289 -20.08878 -19.13995 -17.66128 -17.24628 -16.84038 -16.50455 -15.91188 -15.62664 -15.48068 -15.18074 -14.88513 -14.80183 -14.60562 -14.47658 -14.10999 -13.92395 -13.73555 -13.62289 -13.32185 -13.19331 -12.96954 -12.79927 -12.56792 -12.41245 -12.27095 -12.11850 -11.81550 -11.57621 -11.35909 -11.18071 -11.06853 -11.01103 -10.83009 -10.72817 -10.25348 -10.07758 -9.78992 -9.35101 -9.06897 -8.83276 -8.62931 -8.44516 -8.21138 -6.49310 -6.21252 -3.91647 2.23985 2.39017 2.89040 3.06997 3.21693 3.25400 3.30949 3.53648 3.60498 3.84294 3.92092 4.20695 4.52809 4.66468 4.75420 4.80478 4.94740 4.95538 5.06636 5.09979 5.11543 5.13714 5.14089 5.16021 5.18544 5.20172 5.26036 5.26224 5.40159 5.44443 5.49553 5.50344 5.57472 5.60256 5.65671 5.68114 5.72750 5.86208 5.91447 6.02248 6.14221 6.49180 6.58001 6.63181 6.83719 6.88442 7.31604 7.53946 7.60458 8.35883 8.57641 9.24190 10.86244 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032767 B = 0.001664 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.312528 B =16821.512561 C =17327.563040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.184 4.184 3 C -0.180 4.180 4 C 0.169 3.831 5 N -0.539 5.539 6 C 0.058 3.942 7 C 0.054 3.946 8 N -0.536 5.536 9 C 0.043 3.957 10 C 0.123 3.877 11 N -0.625 5.625 12 C 0.081 3.919 13 C 0.532 3.468 14 O -0.511 6.511 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.059 3.941 26 C 0.058 3.942 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.034 0.966 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.042 0.958 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.598 -5.162 18.238 31.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.185 4.185 3 C -0.180 4.180 4 C 0.042 3.958 5 N -0.264 5.264 6 C -0.070 4.070 7 C -0.074 4.074 8 N -0.262 5.262 9 C -0.085 4.085 10 C -0.001 4.001 11 N -0.362 5.362 12 C -0.062 4.062 13 C 0.320 3.680 14 O -0.385 6.385 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.069 4.069 26 C -0.070 4.070 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.103 0.897 48 H 0.101 0.899 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -23.255 -6.365 19.003 30.698 hybrid contribution -0.785 1.845 -1.478 2.491 sum -24.039 -4.520 17.525 30.090 Atomic orbital electron populations 1.18856 0.84670 1.03059 1.03002 1.22405 0.93874 1.01440 1.00773 1.22028 0.93251 1.01112 1.01610 1.18912 0.84835 0.95774 0.96242 1.62139 1.14448 1.47082 1.02726 1.22176 1.00545 0.96665 0.87581 1.22217 0.87850 0.98586 0.98722 1.62059 1.13487 1.47873 1.02742 1.22466 1.01329 0.93540 0.91212 1.21324 0.99389 0.94070 0.85277 1.47848 1.09726 1.39991 1.38641 1.21773 0.93289 0.92658 0.98523 1.20358 0.80854 0.83541 0.83248 1.90706 1.54452 1.38325 1.55021 1.23561 1.06472 1.01082 0.98963 1.85407 0.96804 1.52052 1.49269 1.22902 0.98235 1.23960 1.23169 0.90911 1.24991 0.95054 0.96373 0.97155 1.70033 1.01549 1.37555 1.41125 0.86122 0.78386 0.80318 0.80699 1.19625 1.20572 1.20570 1.22139 1.00982 0.96174 0.87629 1.22190 0.86391 0.99257 0.99138 0.90263 0.90176 0.90201 0.88510 0.92326 0.93599 0.90377 0.94010 0.89974 0.94732 0.89896 0.88984 0.91125 0.92913 0.90546 0.91501 0.89262 0.89316 0.92248 0.93934 0.89704 0.89940 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.19 10.32 34.37 0.35 0.16 16 2 C -0.18 -1.58 14.13 -37.12 -0.52 -2.10 16 3 C -0.18 -1.65 12.40 -37.12 -0.46 -2.11 16 4 C 0.17 1.30 5.46 -6.61 -0.04 1.26 16 5 N -0.54 -4.75 4.69 -237.97 -1.12 -5.87 16 6 C 0.06 0.52 5.43 -3.77 -0.02 0.50 16 7 C 0.05 0.50 5.41 -3.77 -0.02 0.48 16 8 N -0.54 -5.73 4.71 -234.47 -1.10 -6.83 16 9 C 0.04 0.51 5.28 -3.82 -0.02 0.49 16 10 C 0.12 1.53 5.38 -4.04 -0.02 1.51 16 11 N -0.63 -8.87 2.87 -181.57 -0.52 -9.39 16 12 C 0.08 0.84 10.29 59.85 0.62 1.46 16 13 C 0.53 10.18 7.69 -10.99 -0.08 10.09 16 14 O -0.51 -11.75 15.44 5.56 0.09 -11.67 16 15 C -0.15 -3.07 4.71 36.01 0.17 -2.90 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 21 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.06 0.57 5.61 -3.76 -0.02 0.54 16 26 C 0.06 0.48 5.61 -3.76 -0.02 0.46 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 0.61 8.03 -51.93 -0.42 0.19 16 31 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.69 7.20 -51.93 -0.37 0.31 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.69 6.34 -51.93 -0.33 0.36 16 36 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 37 H 0.08 1.18 8.03 -51.93 -0.42 0.76 16 38 H 0.09 1.37 7.42 -51.93 -0.39 0.98 16 39 H 0.07 0.70 6.24 -51.93 -0.32 0.37 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 42 H 0.07 0.53 7.89 -51.93 -0.41 0.12 16 43 H 0.09 1.68 7.40 -51.92 -0.38 1.30 16 44 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 48 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 49 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 411.82 15.07 6.21 6.21 Total: -1.00 -35.14 411.82 -11.25 -46.39 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -8.40 Total: -2.75 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 0.11 Total: -3.10 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -2.01 Total: -47.56 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.14 -11.25 -46.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317813582.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.732 kcal (2) G-P(sol) polarization free energy of solvation -35.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds