Wall clock time and date at job start Tue Mar 31 2020 23:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46670 * 130.25924 * 4 3 2 6 6 C 1.46947 * 111.00212 * 293.79697 * 5 4 3 7 7 C 1.53053 * 109.36624 * 176.81470 * 6 5 4 8 8 N 1.46952 * 109.36315 * 58.40153 * 7 6 5 9 9 C 1.46905 * 110.99968 * 176.81241 * 8 7 6 10 10 C 1.53001 * 109.47158 * 293.80088 * 9 8 7 11 11 N 1.46500 * 109.47048 * 179.97438 * 10 9 8 12 12 C 1.46502 * 119.99783 * 270.00003 * 11 10 9 13 13 C 1.34777 * 120.00127 * 89.99678 * 11 10 9 14 14 O 1.21280 * 119.99950 * 0.02562 * 13 11 10 15 15 C 1.50699 * 119.99997 * 179.97438 * 13 11 10 16 16 S 1.81000 * 109.47085 * 180.02562 * 15 13 11 17 17 C 1.76202 * 100.00039 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99902 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99975 * 180.02562 * 17 16 15 20 20 N 1.31637 * 119.99953 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99954 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47130 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47183 * 119.99735 * 21 19 17 24 24 H 1.48504 * 109.46768 * 239.99969 * 21 19 17 25 25 C 1.46958 * 110.88310 * 300.67874 * 8 7 6 26 26 C 1.46962 * 110.99604 * 170.00000 * 5 4 3 27 27 H 1.09001 * 109.47046 * 229.74167 * 1 2 3 28 28 H 1.08996 * 109.47170 * 349.73467 * 1 2 3 29 29 H 1.08992 * 109.47449 * 109.74243 * 1 2 3 30 30 H 1.08996 * 109.47366 * 250.26237 * 4 3 2 31 31 H 1.09000 * 109.47090 * 10.26048 * 4 3 2 32 32 H 1.08995 * 109.49326 * 296.78182 * 6 5 4 33 33 H 1.09001 * 109.48965 * 56.84707 * 6 5 4 34 34 H 1.08996 * 109.48803 * 298.43675 * 7 6 5 35 35 H 1.08997 * 109.49194 * 178.37373 * 7 6 5 36 36 H 1.08996 * 109.46700 * 53.80100 * 9 8 7 37 37 H 1.08998 * 109.47102 * 173.79674 * 9 8 7 38 38 H 1.09002 * 109.47001 * 299.99949 * 10 9 8 39 39 H 1.08995 * 109.46992 * 60.00028 * 10 9 8 40 40 H 1.09002 * 109.46869 * 90.00314 * 12 11 10 41 41 H 1.09000 * 109.46976 * 209.99770 * 12 11 10 42 42 H 1.09001 * 109.47211 * 329.99933 * 12 11 10 43 43 H 1.09000 * 109.47196 * 300.00094 * 15 13 11 44 44 H 1.08995 * 109.47467 * 60.00321 * 15 13 11 45 45 H 0.96995 * 119.99434 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.49311 * 299.35611 * 25 8 7 47 47 H 1.09000 * 109.48830 * 179.28622 * 25 8 7 48 48 H 1.09004 * 109.48585 * 303.15533 * 26 5 4 49 49 H 1.08996 * 109.48862 * 63.22185 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 7 4.6068 0.8974 -1.0570 6 6 4.2609 0.3793 -2.3879 7 6 4.7163 1.3773 -3.4551 8 7 6.1654 1.5903 -3.3364 9 6 6.6543 2.4858 -4.3933 10 6 6.5005 1.8015 -5.7531 11 7 6.9874 2.6948 -6.8072 12 6 6.0685 3.6363 -7.4518 13 6 8.2807 2.6505 -7.1839 14 8 9.0413 1.8708 -6.6505 15 6 8.7815 3.5690 -8.2686 16 16 10.5453 3.2710 -8.5449 17 6 10.8574 4.4440 -9.8222 18 1 10.0566 5.0693 -10.1885 19 6 12.1320 4.5635 -10.3584 20 7 13.1078 3.8009 -9.9122 21 14 12.4627 5.8065 -11.7130 22 1 11.2086 6.5341 -12.0340 23 1 13.4935 6.7732 -11.2568 24 1 12.9487 5.0998 -12.9253 25 6 6.5114 2.1084 -2.0054 26 6 6.0561 1.1103 -0.9382 27 1 -0.3633 -0.6641 0.7843 28 1 -0.3633 1.0112 0.1831 29 1 -0.3634 -0.3471 -0.9672 30 1 4.4811 0.3492 0.9672 31 1 4.4823 -1.0091 -0.1831 32 1 4.7601 -0.5764 -2.5472 33 1 3.1817 0.2418 -2.4554 34 1 4.1966 2.3247 -3.3123 35 1 4.4866 0.9818 -4.4445 36 1 6.0752 3.4092 -4.3837 37 1 7.7056 2.7144 -4.2184 38 1 7.0795 0.8780 -5.7627 39 1 5.4492 1.5730 -5.9280 40 1 6.0711 4.5789 -6.9044 41 1 6.3894 3.8117 -8.4786 42 1 5.0616 3.2188 -7.4520 43 1 8.2321 3.3765 -9.1901 44 1 8.6309 4.6051 -7.9656 45 1 13.9985 3.8842 -10.2872 46 1 6.0122 3.0641 -1.8461 47 1 7.5906 2.2458 -1.9380 48 1 6.2856 1.5059 0.0512 49 1 6.5757 0.1629 -1.0810 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317813582.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:40 Heat of formation + Delta-G solvation = 8.157873 kcal Electronic energy + Delta-G solvation = -26204.049103 eV Core-core repulsion = 22486.079034 eV Total energy + Delta-G solvation = -3717.970068 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.00232 -40.28673 -37.54355 -36.33888 -34.73119 -34.58212 -32.37297 -31.90370 -30.77755 -29.40844 -27.86355 -27.69304 -26.80758 -25.16221 -24.47645 -23.00245 -20.83249 -20.59766 -19.52749 -18.11721 -17.85483 -17.55197 -16.97139 -16.87512 -16.75691 -16.30695 -16.06904 -15.88859 -15.57126 -15.46603 -15.11627 -14.79326 -14.53232 -14.40311 -14.33735 -14.26686 -14.04215 -13.87039 -13.60039 -13.51585 -13.21214 -13.14495 -13.08392 -12.91776 -12.83468 -12.59285 -12.30078 -12.22683 -11.93529 -11.73598 -11.64272 -11.15608 -10.90220 -10.83791 -10.64927 -10.25897 -9.78585 -9.49230 -9.31330 -8.67190 -8.34486 -6.12832 1.25880 1.41670 1.46002 1.56413 1.58313 1.61717 1.77682 2.06561 2.27490 2.91254 2.98255 2.99818 3.27547 3.37526 3.68337 3.82189 3.87610 4.02980 4.09192 4.20352 4.21614 4.30692 4.34367 4.36897 4.38012 4.47460 4.48387 4.54357 4.59793 4.68123 4.77791 4.79973 4.82347 4.82941 4.84318 4.85921 4.90966 4.93248 4.95935 5.04653 5.09664 5.42243 5.52437 5.82492 5.88803 6.04159 6.08218 6.20176 6.26707 6.71441 7.06862 7.14678 8.75077 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032767 B = 0.001664 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.312528 B =16821.512561 C =17327.563040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.191 4.191 3 C -0.212 4.212 4 C 0.169 3.831 5 N -0.546 5.546 6 C 0.063 3.937 7 C 0.058 3.942 8 N -0.547 5.547 9 C 0.055 3.945 10 C 0.125 3.875 11 N -0.611 5.611 12 C 0.071 3.929 13 C 0.530 3.470 14 O -0.562 6.562 15 C -0.123 4.123 16 S -0.154 6.154 17 C -0.545 4.545 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.059 3.941 26 C 0.063 3.937 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.271 0.729 46 H 0.041 0.959 47 H 0.078 0.922 48 H 0.100 0.900 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.585 -3.837 17.872 33.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.192 4.192 3 C -0.212 4.212 4 C 0.043 3.957 5 N -0.272 5.272 6 C -0.065 4.065 7 C -0.070 4.070 8 N -0.273 5.273 9 C -0.074 4.074 10 C 0.002 3.998 11 N -0.346 5.346 12 C -0.071 4.071 13 C 0.317 3.683 14 O -0.440 6.440 15 C -0.274 4.274 16 S 0.073 5.927 17 C -0.692 4.692 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.069 4.069 26 C -0.065 4.065 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.059 0.941 47 H 0.097 0.903 48 H 0.118 0.882 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -26.310 -5.027 18.650 32.639 hybrid contribution -0.028 1.399 -1.268 1.888 sum -26.338 -3.629 17.382 31.765 Atomic orbital electron populations 1.19073 0.82533 1.04126 1.04201 1.23311 0.95127 1.00738 1.00052 1.22488 0.94069 1.02069 1.02593 1.18968 0.84396 0.95873 0.96432 1.62147 1.14527 1.47558 1.02926 1.22115 1.00476 0.96220 0.87729 1.22241 0.86636 0.98648 0.99460 1.62052 1.14642 1.47703 1.02859 1.22241 0.99732 0.94171 0.91261 1.21422 1.00642 0.92594 0.85109 1.47832 1.08356 1.40070 1.38305 1.22120 0.93979 0.92653 0.98318 1.20177 0.82321 0.82900 0.82871 1.90690 1.56293 1.40344 1.56682 1.23379 1.01023 1.02426 1.00606 1.85608 1.03881 1.53191 1.50030 1.23227 0.98942 1.23936 1.23128 0.89880 1.26131 0.94652 0.98489 0.99843 1.70198 1.02158 1.39583 1.42885 0.84900 0.78766 0.77342 0.76901 1.17928 1.19959 1.19943 1.22155 1.00693 0.96534 0.87561 1.22165 0.86177 0.98660 0.99481 0.88804 0.89161 0.89036 0.87254 0.91889 0.94270 0.90225 0.94068 0.88888 0.93517 0.92995 0.91780 0.87469 0.91391 0.90499 0.87981 0.87309 0.87531 0.92011 0.94079 0.90316 0.88217 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.34 10.32 70.18 0.72 0.38 16 2 C -0.19 -3.05 14.13 31.13 0.44 -2.61 16 3 C -0.21 -3.71 12.40 31.13 0.39 -3.32 16 4 C 0.17 2.46 5.46 84.50 0.46 2.92 16 5 N -0.55 -9.07 4.69 -906.81 -4.25 -13.32 16 6 C 0.06 1.04 5.43 86.31 0.47 1.51 16 7 C 0.06 0.97 5.41 86.31 0.47 1.44 16 8 N -0.55 -11.32 4.71 -895.72 -4.22 -15.54 16 9 C 0.06 1.26 5.28 86.30 0.46 1.72 16 10 C 0.13 2.95 5.38 86.38 0.47 3.41 16 11 N -0.61 -16.32 2.87 -846.75 -2.43 -18.75 16 12 C 0.07 1.22 10.29 127.77 1.31 2.54 16 13 C 0.53 20.28 7.69 87.66 0.67 20.96 16 14 O -0.56 -26.88 15.44 -3.03 -0.05 -26.93 16 15 C -0.12 -4.98 4.71 71.24 0.34 -4.64 16 16 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 17 C -0.54 -31.22 9.50 67.95 0.65 -30.57 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.77 5.49 84.86 0.47 1.24 16 20 N -0.91 -56.32 13.22 21.65 0.29 -56.03 16 21 Si 1.00 43.64 29.55 68.60 2.03 45.66 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 C 0.06 1.10 5.61 86.31 0.48 1.59 16 26 C 0.06 0.99 5.61 86.31 0.48 1.47 16 27 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.11 1.25 8.03 -2.39 -0.02 1.23 16 31 H 0.06 0.84 8.12 -2.39 -0.02 0.82 16 32 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 1.30 7.20 -2.39 -0.02 1.29 16 34 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 1.32 6.34 -2.39 -0.02 1.30 16 36 H 0.05 0.96 8.12 -2.39 -0.02 0.94 16 37 H 0.05 1.52 8.03 -2.39 -0.02 1.50 16 38 H 0.06 1.92 7.42 -2.39 -0.02 1.90 16 39 H 0.11 1.76 6.24 -2.39 -0.01 1.75 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.36 6.44 -2.39 -0.02 1.35 16 42 H 0.10 1.11 7.89 -2.39 -0.02 1.09 16 43 H 0.11 3.95 7.40 -2.40 -0.02 3.93 16 44 H 0.11 3.90 8.11 -2.40 -0.02 3.88 16 45 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 46 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.08 1.55 8.07 -2.39 -0.02 1.53 16 48 H 0.10 1.21 8.07 -2.39 -0.02 1.19 16 49 H 0.04 0.72 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -79.53 411.82 -0.61 -80.13 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.92 Total: 16.60 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 8.27 Total: -1.98 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -10.62 Total: -103.65 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.05 Total: -26.93 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -79.53 -0.61 -80.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317813582.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.293 kcal (2) G-P(sol) polarization free energy of solvation -79.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds