Wall clock time and date at job start Tue Mar 31 2020 23:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21693 * 120.00183 * 0.02562 * 7 6 5 9 9 C 1.46680 * 120.00113 * 179.97438 * 7 6 5 10 10 S 1.76217 * 126.12767 * 359.69668 * 9 7 6 11 11 C 1.70959 * 90.31398 * 179.91761 * 10 9 7 12 12 C 1.50695 * 124.80739 * 180.10653 * 11 10 9 13 13 N 1.29430 * 110.38659 * 0.34463 * 11 10 9 14 14 C 1.30946 * 117.36946 * 359.72890 * 13 11 10 15 15 C 1.50696 * 122.90594 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47020 * 269.99765 * 15 14 13 17 17 C 1.52995 * 109.47123 * 175.00315 * 16 15 14 18 18 C 1.53003 * 109.46882 * 295.00163 * 16 15 14 19 19 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 20 20 C 1.36935 * 120.00239 * 275.00034 * 19 3 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 3 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 29 29 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 31 31 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 32 32 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 33 33 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 34 34 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 35 35 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 36 36 H 1.09004 * 109.46778 * 270.27686 * 12 11 10 37 37 H 1.09001 * 109.46947 * 30.27437 * 12 11 10 38 38 H 1.09001 * 109.47406 * 150.27764 * 12 11 10 39 39 H 1.08997 * 109.47282 * 29.99513 * 15 14 13 40 40 H 1.09003 * 109.47245 * 149.99566 * 15 14 13 41 41 H 1.08993 * 109.47454 * 54.99821 * 16 15 14 42 42 H 1.09003 * 109.47261 * 59.99518 * 17 16 15 43 43 H 1.09006 * 109.47068 * 179.97438 * 17 16 15 44 44 H 1.09005 * 109.47248 * 299.99775 * 17 16 15 45 45 H 1.09002 * 109.47306 * 299.99761 * 18 16 15 46 46 H 1.08999 * 109.47430 * 59.99993 * 18 16 15 47 47 H 1.09003 * 109.47267 * 180.02562 * 18 16 15 48 48 H 0.97004 * 119.99747 * 95.00774 * 19 3 2 49 49 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1659 2.1454 -0.2598 9 6 5.8844 4.4373 0.0324 10 16 4.9038 5.8811 0.2749 11 6 6.3130 6.8490 0.2790 12 6 6.3281 8.3457 0.4536 13 7 7.3647 6.1148 0.1059 14 6 7.1829 4.8251 -0.0299 15 6 8.3178 3.8558 -0.2380 16 6 8.5829 3.6948 -1.7362 17 6 9.8130 2.8093 -1.9443 18 6 7.3682 3.0450 -2.4021 19 7 1.6524 2.0974 1.2518 20 6 0.4156 2.6734 1.3688 21 1 -0.2743 2.6446 0.5384 22 6 0.0486 3.2945 2.5548 23 7 0.8874 3.3249 3.5687 24 14 -1.6388 4.0796 2.7147 25 1 -1.7858 4.6654 4.0714 26 1 -1.7857 5.1494 1.6951 27 1 -2.6865 3.0484 2.5046 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9954 0.8311 0.6659 34 1 3.8498 1.0377 -1.0961 35 1 3.4410 3.5483 0.1315 36 1 6.2476 8.8261 -0.5216 37 1 5.4867 8.6472 1.0776 38 1 7.2607 8.6465 0.9310 39 1 9.2147 4.2361 0.2508 40 1 8.0530 2.8889 0.1901 41 1 8.7605 4.6739 -2.1810 42 1 9.6354 1.8302 -1.4994 43 1 10.0016 2.6943 -3.0117 44 1 10.6784 3.2723 -1.4699 45 1 7.1905 2.0659 -1.9573 46 1 6.4918 3.6758 -2.2538 47 1 7.5572 2.9299 -3.4694 48 1 2.2720 2.1231 1.9978 49 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318543834.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:32 Heat of formation + Delta-G solvation = -5.677342 kcal Electronic energy + Delta-G solvation = -28112.847700 eV Core-core repulsion = 24394.277692 eV Total energy + Delta-G solvation = -3718.570008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.55845 -39.03559 -36.92858 -36.01846 -33.89711 -32.69516 -32.36181 -29.80575 -29.10323 -28.26134 -27.24556 -26.86021 -23.77123 -23.11906 -22.77058 -21.19128 -20.32387 -20.21147 -19.24671 -17.84814 -17.52745 -16.76758 -15.75102 -15.62092 -15.18890 -15.07712 -14.70109 -14.37427 -14.12147 -13.89640 -13.79584 -13.66313 -13.52203 -13.22763 -12.86502 -12.74275 -12.56371 -12.38591 -12.23653 -12.15779 -11.83635 -11.65355 -11.33989 -11.04451 -10.88786 -10.83730 -10.79286 -10.67215 -10.54101 -10.40045 -10.15251 -9.92890 -9.90973 -9.57488 -9.45850 -9.25084 -9.00027 -8.81934 -8.63912 -7.14756 -6.15955 -3.17979 0.24996 1.17968 1.59604 2.44263 3.27965 3.37015 3.46305 3.48732 3.66405 3.91268 4.59325 4.71261 4.85550 4.97880 5.00146 5.06966 5.20518 5.22710 5.27862 5.31203 5.33203 5.49616 5.60754 5.66471 5.71098 5.75176 5.78389 5.85255 5.86039 5.88181 5.96027 6.01386 6.04071 6.11994 6.26941 6.29130 6.36928 6.39487 6.46538 6.49735 6.58738 6.79793 6.90799 7.17878 7.57673 7.73793 7.74087 8.35236 8.67494 9.11990 9.98939 10.13762 11.30792 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.003696 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.824032 B = 7573.424393 C = 9552.950518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.055 0.945 5 C 0.115 3.885 6 N -0.709 5.709 7 C 0.591 3.409 8 O -0.527 6.527 9 C -0.294 4.294 10 S 0.180 5.820 11 C 0.050 3.950 12 C -0.080 4.080 13 N -0.479 5.479 14 C 0.150 3.850 15 C -0.051 4.051 16 C -0.080 4.080 17 C -0.143 4.143 18 C -0.149 4.149 19 N -0.733 5.733 20 C -0.330 4.330 21 H 0.068 0.932 22 C -0.041 4.041 23 N -0.940 5.940 24 Si 1.075 2.925 25 H -0.286 1.286 26 H -0.295 1.295 27 H -0.295 1.295 28 H 0.040 0.960 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.407 0.593 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.083 0.917 46 H 0.043 0.957 47 H 0.040 0.960 48 H 0.368 0.632 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.032 4.594 -10.201 16.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.073 0.927 5 C -0.009 4.009 6 N -0.360 5.360 7 C 0.377 3.623 8 O -0.407 6.407 9 C -0.418 4.418 10 S 0.438 5.562 11 C -0.224 4.224 12 C -0.140 4.140 13 N -0.195 5.195 14 C 0.011 3.989 15 C -0.091 4.091 16 C -0.099 4.099 17 C -0.200 4.200 18 C -0.206 4.206 19 N -0.376 5.376 20 C -0.460 4.460 21 H 0.086 0.914 22 C -0.240 4.240 23 N -0.585 5.585 24 Si 0.906 3.094 25 H -0.211 1.211 26 H -0.223 1.223 27 H -0.223 1.223 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.243 0.757 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.201 0.799 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.742 5.313 -9.349 15.199 hybrid contribution 1.389 -1.013 -0.844 1.915 sum 12.131 4.300 -10.193 16.418 Atomic orbital electron populations 1.21760 0.95527 0.99638 1.03373 1.22047 0.97164 0.98116 0.99992 1.20511 0.89674 0.92906 0.91141 0.92732 1.21740 0.95766 0.81971 1.01429 1.45911 1.06434 1.11120 1.72518 1.16634 0.82614 0.85857 0.77209 1.90701 1.55487 1.44502 1.49964 1.25546 0.97398 0.98579 1.20236 1.84367 1.10621 0.97125 1.64057 1.27374 0.91727 1.02104 1.01235 1.20507 1.04680 0.85095 1.03731 1.66064 1.31609 1.04577 1.17207 1.20532 0.93274 0.89812 0.95279 1.20561 0.93590 0.97569 0.97386 1.20928 0.95861 0.99014 0.94071 1.21794 0.96898 0.99994 1.01318 1.22115 0.96859 1.02688 0.98951 1.42467 1.16857 1.67067 1.11240 1.19987 0.92582 1.32434 1.01021 0.91447 1.25689 1.05639 1.00364 0.92264 1.70888 1.08405 1.47293 1.31900 0.83312 0.74388 0.75917 0.75824 1.21117 1.22273 1.22276 0.94096 0.94845 0.89590 0.93741 0.92660 0.91606 0.91416 0.75683 0.89316 0.89652 0.89068 0.90644 0.87559 0.91898 0.92261 0.92796 0.92884 0.89799 0.93767 0.94043 0.79895 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.18 37.15 0.34 -2.25 16 2 C -0.13 -2.25 5.61 -26.73 -0.15 -2.40 16 3 C 0.17 3.06 2.59 -67.93 -0.18 2.89 16 4 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 5 C 0.12 1.90 5.23 -4.04 -0.02 1.88 16 6 N -0.71 -11.89 5.38 -61.62 -0.33 -12.22 16 7 C 0.59 9.88 6.71 -12.85 -0.09 9.79 16 8 O -0.53 -9.22 10.95 5.20 0.06 -9.17 16 9 C -0.29 -4.56 5.48 -37.10 -0.20 -4.76 16 10 S 0.18 2.46 22.31 -107.50 -2.40 0.06 16 11 C 0.05 0.63 7.39 -13.29 -0.10 0.53 16 12 C -0.08 -0.67 10.46 36.00 0.38 -0.29 16 13 N -0.48 -6.86 10.50 -7.70 -0.08 -6.94 16 14 C 0.15 2.23 5.58 -83.89 -0.47 1.76 16 15 C -0.05 -0.69 4.82 -27.88 -0.13 -0.83 16 16 C -0.08 -0.97 2.91 -90.62 -0.26 -1.24 16 17 C -0.14 -1.45 9.19 37.16 0.34 -1.11 16 18 C -0.15 -1.99 7.63 37.16 0.28 -1.71 16 19 N -0.73 -16.38 4.50 -53.43 -0.24 -16.62 16 20 C -0.33 -8.30 7.75 -15.06 -0.12 -8.41 16 21 H 0.07 1.68 7.32 -52.48 -0.38 1.30 16 22 C -0.04 -1.11 5.50 -17.43 -0.10 -1.21 16 23 N -0.94 -27.38 13.70 55.49 0.76 -26.62 16 24 Si 1.07 24.52 29.92 -169.99 -5.09 19.44 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.30 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.30 -6.50 7.11 56.52 0.40 -6.10 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.82 5.99 -51.93 -0.31 1.51 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.41 7.12 7.32 -40.82 -0.30 6.83 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.11 1.58 6.01 -51.93 -0.31 1.26 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 1.25 5.89 -51.93 -0.31 0.94 16 46 H 0.04 0.65 5.79 -51.93 -0.30 0.35 16 47 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.37 8.81 6.63 -40.82 -0.27 8.54 16 49 H 0.26 7.39 6.77 -40.82 -0.28 7.11 16 LS Contribution 396.54 15.07 5.98 5.98 Total: -1.00 -29.25 396.54 -9.83 -39.08 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -8.02 Total: 14.36 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -0.47 Total: -7.36 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: 0.11 Total: -62.39 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.06 Total: -9.17 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.09 Total: 19.44 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.40 Total: 0.06 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.25 -9.83 -39.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318543834.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.407 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds