Wall clock time and date at job start Tue Mar 31 2020 23:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21693 * 120.00183 * 0.02562 * 7 6 5 9 9 C 1.46680 * 120.00113 * 179.97438 * 7 6 5 10 10 S 1.76217 * 126.12767 * 359.69668 * 9 7 6 11 11 C 1.70959 * 90.31398 * 179.91761 * 10 9 7 12 12 C 1.50695 * 124.80739 * 180.10653 * 11 10 9 13 13 N 1.29430 * 110.38659 * 0.34463 * 11 10 9 14 14 C 1.30946 * 117.36946 * 359.72890 * 13 11 10 15 15 C 1.50696 * 122.90594 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47020 * 269.99765 * 15 14 13 17 17 C 1.52995 * 109.47123 * 175.00315 * 16 15 14 18 18 C 1.53003 * 109.46882 * 295.00163 * 16 15 14 19 19 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 20 20 C 1.36935 * 120.00239 * 275.00034 * 19 3 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 3 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 29 29 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 31 31 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 32 32 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 33 33 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 34 34 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 35 35 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 36 36 H 1.09004 * 109.46778 * 270.27686 * 12 11 10 37 37 H 1.09001 * 109.46947 * 30.27437 * 12 11 10 38 38 H 1.09001 * 109.47406 * 150.27764 * 12 11 10 39 39 H 1.08997 * 109.47282 * 29.99513 * 15 14 13 40 40 H 1.09003 * 109.47245 * 149.99566 * 15 14 13 41 41 H 1.08993 * 109.47454 * 54.99821 * 16 15 14 42 42 H 1.09003 * 109.47261 * 59.99518 * 17 16 15 43 43 H 1.09006 * 109.47068 * 179.97438 * 17 16 15 44 44 H 1.09005 * 109.47248 * 299.99775 * 17 16 15 45 45 H 1.09002 * 109.47306 * 299.99761 * 18 16 15 46 46 H 1.08999 * 109.47430 * 59.99993 * 18 16 15 47 47 H 1.09003 * 109.47267 * 180.02562 * 18 16 15 48 48 H 0.97004 * 119.99747 * 95.00774 * 19 3 2 49 49 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1659 2.1454 -0.2598 9 6 5.8844 4.4373 0.0324 10 16 4.9038 5.8811 0.2749 11 6 6.3130 6.8490 0.2790 12 6 6.3281 8.3457 0.4536 13 7 7.3647 6.1148 0.1059 14 6 7.1829 4.8251 -0.0299 15 6 8.3178 3.8558 -0.2380 16 6 8.5829 3.6948 -1.7362 17 6 9.8130 2.8093 -1.9443 18 6 7.3682 3.0450 -2.4021 19 7 1.6524 2.0974 1.2518 20 6 0.4156 2.6734 1.3688 21 1 -0.2743 2.6446 0.5384 22 6 0.0486 3.2945 2.5548 23 7 0.8874 3.3249 3.5687 24 14 -1.6388 4.0796 2.7147 25 1 -1.7858 4.6654 4.0714 26 1 -1.7857 5.1494 1.6951 27 1 -2.6865 3.0484 2.5046 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9954 0.8311 0.6659 34 1 3.8498 1.0377 -1.0961 35 1 3.4410 3.5483 0.1315 36 1 6.2476 8.8261 -0.5216 37 1 5.4867 8.6472 1.0776 38 1 7.2607 8.6465 0.9310 39 1 9.2147 4.2361 0.2508 40 1 8.0530 2.8889 0.1901 41 1 8.7605 4.6739 -2.1810 42 1 9.6354 1.8302 -1.4994 43 1 10.0016 2.6943 -3.0117 44 1 10.6784 3.2723 -1.4699 45 1 7.1905 2.0659 -1.9573 46 1 6.4918 3.6758 -2.2538 47 1 7.5572 2.9299 -3.4694 48 1 2.2720 2.1231 1.9978 49 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318543834.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:31 Heat of formation + Delta-G solvation = -23.176165 kcal Electronic energy + Delta-G solvation = -28113.606506 eV Core-core repulsion = 24394.277692 eV Total energy + Delta-G solvation = -3719.328814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70733 -40.29593 -38.44631 -37.06826 -35.42735 -34.36340 -33.34368 -31.39835 -30.35257 -29.40598 -28.50084 -27.88702 -25.53428 -24.42910 -23.98738 -22.46006 -21.79329 -21.20743 -20.51562 -19.42234 -18.94866 -18.03219 -17.00686 -16.90729 -16.54938 -16.32845 -16.12269 -15.62269 -15.46169 -15.29217 -15.02790 -14.81237 -14.71634 -14.62101 -14.24901 -13.71610 -13.55939 -13.40826 -13.25840 -13.24759 -13.20101 -12.88062 -12.70378 -12.56810 -12.36675 -12.10669 -12.00342 -11.88047 -11.83745 -11.77580 -11.66785 -11.54485 -11.18408 -11.07127 -10.89667 -10.73524 -10.58287 -10.11924 -9.75206 -9.07550 -8.26232 -5.21917 -0.84262 0.11094 0.51423 1.31510 1.62042 1.69970 1.85601 2.01977 2.09529 2.75280 2.93921 3.49241 3.66824 3.73400 3.79849 3.81017 3.90798 4.01897 4.14654 4.22028 4.26418 4.38359 4.47730 4.54832 4.61582 4.64247 4.66404 4.71260 4.76240 4.81876 4.87600 4.97326 4.99888 5.00298 5.04687 5.08800 5.12721 5.13586 5.29344 5.31235 5.40259 5.45543 5.59779 5.64956 5.73052 6.33504 6.54119 6.58110 7.03467 7.14811 8.04706 8.17632 9.23730 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.003696 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.824032 B = 7573.424393 C = 9552.950518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.169 3.831 4 H 0.055 0.945 5 C 0.124 3.876 6 N -0.712 5.712 7 C 0.591 3.409 8 O -0.539 6.539 9 C -0.323 4.323 10 S 0.170 5.830 11 C 0.069 3.931 12 C -0.082 4.082 13 N -0.497 5.497 14 C 0.152 3.848 15 C -0.051 4.051 16 C -0.075 4.075 17 C -0.138 4.138 18 C -0.142 4.142 19 N -0.739 5.739 20 C -0.307 4.307 21 H 0.071 0.929 22 C -0.101 4.101 23 N -0.977 5.977 24 Si 1.116 2.884 25 H -0.301 1.301 26 H -0.277 1.277 27 H -0.283 1.283 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.402 0.598 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.026 0.974 47 H 0.054 0.946 48 H 0.357 0.643 49 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.459 5.305 -11.945 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C 0.060 3.940 4 H 0.073 0.927 5 C 0.000 4.000 6 N -0.363 5.363 7 C 0.377 3.623 8 O -0.420 6.420 9 C -0.447 4.447 10 S 0.428 5.572 11 C -0.206 4.206 12 C -0.142 4.142 13 N -0.213 5.213 14 C 0.013 3.987 15 C -0.091 4.091 16 C -0.094 4.094 17 C -0.195 4.195 18 C -0.199 4.199 19 N -0.382 5.382 20 C -0.438 4.438 21 H 0.089 0.911 22 C -0.293 4.293 23 N -0.626 5.626 24 Si 0.943 3.057 25 H -0.227 1.227 26 H -0.203 1.203 27 H -0.210 1.210 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.238 0.762 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.073 0.927 48 H 0.189 0.811 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 11.170 5.993 -11.151 16.883 hybrid contribution 1.310 -1.224 -0.384 1.834 sum 12.480 4.769 -11.536 17.651 Atomic orbital electron populations 1.21681 0.95885 1.00585 1.01753 1.21966 0.96724 0.97013 1.01122 1.20656 0.90821 0.93376 0.89103 0.92740 1.21641 0.94317 0.81997 1.02010 1.45911 1.06543 1.10946 1.72871 1.16792 0.82326 0.86425 0.76715 1.90692 1.55615 1.45135 1.50582 1.25433 0.98069 0.98540 1.22630 1.84361 1.11357 0.96894 1.64592 1.28164 0.90547 1.03622 0.98271 1.20779 1.05972 0.82020 1.05457 1.66154 1.32090 1.04347 1.18659 1.20795 0.93388 0.90424 0.94125 1.20581 0.93561 0.96523 0.98397 1.20902 0.96243 0.99366 0.92858 1.21759 0.96220 0.99276 1.02270 1.22021 0.96746 1.01402 0.99770 1.42585 1.15881 1.67383 1.12336 1.20219 0.93147 1.30041 1.00391 0.91086 1.26820 1.08011 1.01902 0.92541 1.70996 1.08549 1.49830 1.33241 0.82746 0.71654 0.75923 0.75345 1.22714 1.20307 1.20967 0.93306 0.92742 0.93389 0.90445 0.93606 0.92534 0.89585 0.76195 0.87032 0.88073 0.87908 0.89616 0.89185 0.91800 0.92791 0.91561 0.91626 0.91444 0.95523 0.92684 0.81056 0.94755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 9.18 71.98 0.66 -4.15 16 2 C -0.13 -4.15 5.61 30.59 0.17 -3.98 16 3 C 0.17 6.06 2.59 44.99 0.12 6.17 16 4 H 0.05 1.98 8.08 -2.38 -0.02 1.96 16 5 C 0.12 4.07 5.23 86.38 0.45 4.52 16 6 N -0.71 -24.24 5.38 -467.08 -2.51 -26.76 16 7 C 0.59 20.14 6.71 86.45 0.58 20.72 16 8 O -0.54 -19.26 10.95 -4.33 -0.05 -19.31 16 9 C -0.32 -10.16 5.48 23.88 0.13 -10.03 16 10 S 0.17 4.61 22.31 -56.49 -1.26 3.35 16 11 C 0.07 1.62 7.39 88.46 0.65 2.28 16 12 C -0.08 -1.16 10.46 71.23 0.75 -0.41 16 13 N -0.50 -13.73 10.50 -178.29 -1.87 -15.60 16 14 C 0.15 4.50 5.58 42.09 0.24 4.73 16 15 C -0.05 -1.36 4.82 29.85 0.14 -1.22 16 16 C -0.07 -1.75 2.91 -10.79 -0.03 -1.79 16 17 C -0.14 -2.59 9.19 71.98 0.66 -1.93 16 18 C -0.14 -3.75 7.63 71.98 0.55 -3.20 16 19 N -0.74 -33.41 4.50 -322.94 -1.45 -34.87 16 20 C -0.31 -15.48 7.75 84.03 0.65 -14.82 16 21 H 0.07 3.50 7.32 -2.91 -0.02 3.48 16 22 C -0.10 -5.50 5.50 84.86 0.47 -5.03 16 23 N -0.98 -58.43 13.70 21.65 0.30 -58.13 16 24 Si 1.12 49.65 29.92 68.60 2.05 51.70 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 27 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 1.99 5.99 -2.38 -0.01 1.98 16 31 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.40 14.40 7.32 -92.71 -0.68 13.73 16 36 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.09 2.72 6.01 -2.39 -0.01 2.71 16 41 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 45 H 0.07 2.01 5.89 -2.39 -0.01 1.99 16 46 H 0.03 0.77 5.79 -2.39 -0.01 0.76 16 47 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.36 17.66 6.63 -92.71 -0.61 17.05 16 49 H 0.24 14.55 6.77 -92.71 -0.63 13.92 16 Total: -1.00 -63.91 396.54 1.20 -62.71 By element: Atomic # 1 Polarization: 45.22 SS G_CDS: -0.19 Total: 45.03 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 6.19 Total: -8.14 kcal Atomic # 7 Polarization: -129.81 SS G_CDS: -5.54 Total: -135.36 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.05 Total: -19.31 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.05 Total: 51.70 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.26 Total: 3.35 kcal Total: -63.91 1.20 -62.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318543834.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.536 kcal (2) G-P(sol) polarization free energy of solvation -63.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds