Wall clock time and date at job start Tue Mar 31 2020 23:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21680 * 120.00123 * 359.97438 * 7 6 5 9 9 C 1.46682 * 119.99579 * 179.97438 * 7 6 5 10 10 S 1.76212 * 126.13370 * 359.68724 * 9 7 6 11 11 C 1.70956 * 90.31480 * 179.97438 * 10 9 7 12 12 C 1.50704 * 124.80437 * 180.10367 * 11 10 9 13 13 N 1.29428 * 110.38962 * 0.34835 * 11 10 9 14 14 C 1.30944 * 117.36754 * 359.72689 * 13 11 10 15 15 C 1.50693 * 122.90609 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47204 * 269.99750 * 15 14 13 17 17 C 1.52997 * 109.47128 * 64.99852 * 16 15 14 18 18 C 1.52994 * 109.47372 * 185.00464 * 16 15 14 19 19 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 3 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 3 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 3 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 29 29 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 30 30 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 32 32 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 33 33 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 34 34 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 35 35 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 36 36 H 1.08997 * 109.47390 * 270.27785 * 12 11 10 37 37 H 1.09002 * 109.46881 * 30.27825 * 12 11 10 38 38 H 1.09003 * 109.47115 * 150.27813 * 12 11 10 39 39 H 1.09003 * 109.47321 * 29.99631 * 15 14 13 40 40 H 1.08997 * 109.47129 * 149.99450 * 15 14 13 41 41 H 1.09006 * 109.46952 * 305.00150 * 16 15 14 42 42 H 1.09002 * 109.47183 * 180.02562 * 17 16 15 43 43 H 1.09001 * 109.47286 * 299.99827 * 17 16 15 44 44 H 1.08992 * 109.47079 * 60.00289 * 17 16 15 45 45 H 1.09001 * 109.47840 * 59.99511 * 18 16 15 46 46 H 1.09002 * 109.47272 * 180.02562 * 18 16 15 47 47 H 1.09006 * 109.46825 * 299.99763 * 18 16 15 48 48 H 0.97000 * 119.99792 * 264.99726 * 19 3 2 49 49 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1661 2.1452 0.2577 9 6 5.8846 4.4370 -0.0346 10 16 4.9053 5.8791 -0.2923 11 6 6.3135 6.8484 -0.2841 12 6 6.3285 8.3452 -0.4588 13 7 7.3653 6.1141 -0.1118 14 6 7.1834 4.8247 0.0254 15 6 8.3183 3.8553 0.2328 16 6 8.8194 3.3587 -1.1247 17 6 9.4235 4.5283 -1.9044 18 6 9.8858 2.2824 -0.9122 19 7 1.6524 2.0975 -1.2518 20 6 0.4157 2.6734 -1.3688 21 1 -0.2740 2.6452 -0.5381 22 6 0.0506 3.2991 -2.5530 23 7 0.8912 3.3339 -3.5651 24 14 -1.6337 4.0915 -2.7099 25 1 -2.3839 3.9152 -1.4404 26 1 -1.4746 5.5403 -2.9943 27 1 -2.3819 3.4484 -3.8198 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.8500 1.0377 1.0960 34 1 3.9955 0.8311 -0.6660 35 1 3.4411 3.5483 -0.1315 36 1 6.4154 8.5865 -1.5182 37 1 5.4035 8.7662 -0.0649 38 1 7.1775 8.7654 0.0803 39 1 9.1313 4.3550 0.7596 40 1 7.9693 3.0082 0.8234 41 1 7.9861 2.9383 -1.6880 42 1 9.7801 4.1746 -2.8718 43 1 8.6637 5.2950 -2.0559 44 1 10.2566 4.9486 -1.3412 45 1 9.4554 1.4490 -0.3568 46 1 10.2431 1.9289 -1.8795 47 1 10.7190 2.7027 -0.3490 48 1 2.2720 2.1232 -1.9978 49 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318543837.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:35 Heat of formation + Delta-G solvation = -10.042909 kcal Electronic energy + Delta-G solvation = -27851.395807 eV Core-core repulsion = 24132.636494 eV Total energy + Delta-G solvation = -3718.759313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.43131 -38.97120 -36.74043 -36.01503 -33.76756 -32.50513 -32.31024 -29.87067 -29.17427 -28.29577 -27.14673 -26.92677 -23.89100 -23.14394 -22.71548 -21.11279 -20.22341 -20.06601 -19.10661 -17.94973 -17.36021 -16.54732 -15.63678 -15.56134 -15.20664 -14.86876 -14.54226 -14.41810 -14.00580 -13.94980 -13.87177 -13.46199 -13.23159 -13.05472 -12.81366 -12.75889 -12.53267 -12.48428 -12.21371 -12.16182 -11.73811 -11.48812 -11.46748 -11.00855 -10.93343 -10.87309 -10.82569 -10.75120 -10.52631 -10.45773 -10.22626 -10.03638 -9.88021 -9.59038 -9.53292 -9.43105 -9.00288 -8.80272 -8.57786 -7.07832 -5.85210 -3.14762 0.30251 1.23115 1.64971 2.49641 3.34498 3.36245 3.42832 3.44854 3.45470 3.95523 4.50597 4.75689 4.93793 5.00551 5.05449 5.10679 5.23813 5.28491 5.32144 5.37428 5.41275 5.51816 5.62668 5.67778 5.77719 5.80180 5.86360 5.87934 5.92288 5.92783 5.95539 5.99756 6.10675 6.15056 6.36425 6.38516 6.38802 6.47207 6.50755 6.53897 6.57256 6.81727 6.98313 7.21430 7.62958 7.63393 7.81382 8.31576 8.40984 9.43871 9.98237 10.34275 11.36573 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.003566 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.725165 B = 7850.319608 C = 9387.198895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.054 0.946 5 C 0.116 3.884 6 N -0.706 5.706 7 C 0.593 3.407 8 O -0.534 6.534 9 C -0.295 4.295 10 S 0.184 5.816 11 C 0.047 3.953 12 C -0.079 4.079 13 N -0.476 5.476 14 C 0.149 3.851 15 C -0.049 4.049 16 C -0.083 4.083 17 C -0.144 4.144 18 C -0.142 4.142 19 N -0.722 5.722 20 C -0.238 4.238 21 H 0.074 0.926 22 C -0.009 4.009 23 N -0.928 5.928 24 Si 0.901 3.099 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.408 0.592 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.053 0.947 47 H 0.051 0.949 48 H 0.385 0.615 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.736 4.958 7.793 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.008 4.008 6 N -0.357 5.357 7 C 0.378 3.622 8 O -0.414 6.414 9 C -0.419 4.419 10 S 0.442 5.558 11 C -0.228 4.228 12 C -0.139 4.139 13 N -0.191 5.191 14 C 0.011 3.989 15 C -0.089 4.089 16 C -0.102 4.102 17 C -0.201 4.201 18 C -0.199 4.199 19 N -0.364 5.364 20 C -0.369 4.369 21 H 0.092 0.908 22 C -0.206 4.206 23 N -0.576 5.576 24 Si 0.732 3.268 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.244 0.756 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.219 0.781 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.458 4.905 7.819 15.505 hybrid contribution -0.548 0.270 -0.507 0.794 sum 11.910 5.175 7.312 14.903 Atomic orbital electron populations 1.21767 0.95678 0.99657 1.03260 1.22058 0.97006 0.98249 1.00072 1.20580 0.89777 0.92972 0.91492 0.92822 1.21732 0.95781 0.81966 1.01367 1.45898 1.06376 1.11206 1.72224 1.16673 0.82703 0.85753 0.77112 1.90742 1.55735 1.44254 1.50633 1.25566 0.97468 0.98744 1.20109 1.84361 1.10621 0.97041 1.63775 1.27376 0.91885 1.02056 1.01455 1.20491 1.04262 0.85191 1.03987 1.66089 1.31400 1.04556 1.17083 1.20538 0.93108 0.89843 0.95437 1.20541 0.93324 0.96357 0.98652 1.20950 0.98333 0.95734 0.95215 1.21850 1.00836 0.98051 0.99378 1.21775 0.98148 0.98508 1.01478 1.42471 1.16821 1.65889 1.11246 1.19248 0.91943 1.27606 0.98135 0.90820 1.24725 0.98004 1.01472 0.96393 1.69672 1.35124 1.48745 1.04046 0.86215 0.84130 0.78944 0.77491 1.20525 1.21891 1.21919 0.94126 0.89646 0.94847 0.92473 0.93805 0.91534 0.91491 0.75561 0.89272 0.89836 0.89167 0.90703 0.87713 0.90964 0.93247 0.92639 0.92791 0.92206 0.92812 0.92957 0.78100 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.18 37.16 0.34 -2.22 16 2 C -0.13 -2.24 5.61 -26.73 -0.15 -2.39 16 3 C 0.16 2.94 2.59 -67.93 -0.18 2.77 16 4 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 5 C 0.12 1.94 5.23 -4.04 -0.02 1.92 16 6 N -0.71 -12.08 5.38 -61.61 -0.33 -12.41 16 7 C 0.59 10.24 7.78 -12.85 -0.10 10.14 16 8 O -0.53 -9.91 14.27 5.21 0.07 -9.84 16 9 C -0.29 -4.64 6.48 -37.09 -0.24 -4.88 16 10 S 0.18 2.51 22.31 -107.50 -2.40 0.11 16 11 C 0.05 0.58 7.39 -13.29 -0.10 0.48 16 12 C -0.08 -0.65 10.46 36.01 0.38 -0.28 16 13 N -0.48 -6.66 9.64 -7.70 -0.07 -6.73 16 14 C 0.15 2.22 5.32 -83.89 -0.45 1.78 16 15 C -0.05 -0.67 4.50 -27.89 -0.13 -0.79 16 16 C -0.08 -1.08 2.91 -90.63 -0.26 -1.35 16 17 C -0.14 -1.74 8.97 37.16 0.33 -1.41 16 18 C -0.14 -1.57 9.19 37.15 0.34 -1.23 16 19 N -0.72 -16.19 4.51 -53.42 -0.24 -16.43 16 20 C -0.24 -5.93 7.75 -15.06 -0.12 -6.05 16 21 H 0.07 1.80 7.32 -52.49 -0.38 1.42 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -26.30 13.06 55.49 0.72 -25.57 16 24 Si 0.90 21.12 29.55 -169.99 -5.02 16.09 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.77 5.99 -51.93 -0.31 1.46 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.41 7.19 7.32 -40.82 -0.30 6.89 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.10 1.55 6.01 -51.93 -0.31 1.24 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.75 6.75 -51.93 -0.35 0.40 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.38 9.52 7.80 -40.82 -0.32 9.20 16 49 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 406.76 15.07 6.13 6.13 Total: -1.00 -28.73 406.76 -9.87 -38.60 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -8.29 Total: 13.89 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.44 Total: -3.85 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.08 Total: -61.14 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.40 Total: 0.11 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -28.73 -9.87 -38.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318543837.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.560 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds