Wall clock time and date at job start Tue Mar 31 2020 23:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47446 * 2 1 4 4 N 1.29432 * 124.80602 * 90.02785 * 3 2 1 5 5 C 1.30939 * 117.36787 * 179.97438 * 4 3 2 6 6 C 1.50691 * 122.90752 * 180.02562 * 5 4 3 7 7 C 1.35666 * 114.18893 * 359.97438 * 5 4 3 8 8 C 1.46679 * 126.12853 * 180.02562 * 7 5 4 9 9 O 1.21685 * 120.00334 * 350.66450 * 8 7 5 10 10 N 1.34783 * 119.99802 * 170.94571 * 8 7 5 11 11 C 1.46489 * 120.00102 * 0.63206 * 10 8 7 12 12 C 1.46506 * 119.99827 * 180.63604 * 10 8 7 13 13 C 1.52997 * 109.47056 * 89.99581 * 12 10 8 14 14 C 1.52993 * 109.47316 * 299.99898 * 13 12 10 15 15 C 1.53000 * 109.47192 * 60.00174 * 13 12 10 16 16 C 1.53007 * 109.46775 * 179.97438 * 13 12 10 17 17 N 1.46503 * 109.46886 * 179.97438 * 16 13 12 18 18 C 1.36931 * 120.00021 * 179.97438 * 17 16 13 19 19 H 1.08007 * 119.99956 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00457 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99492 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00310 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47357 * 59.99836 * 22 20 18 24 24 H 1.48502 * 109.47016 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.46845 * 299.99770 * 22 20 18 26 26 S 1.70956 * 124.80490 * 270.31782 * 3 2 1 27 27 H 1.08993 * 109.47531 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46907 * 300.00201 * 1 2 3 29 29 H 1.09003 * 109.47375 * 59.99411 * 1 2 3 30 30 H 1.09001 * 109.46907 * 239.99799 * 2 1 3 31 31 H 1.09003 * 109.47375 * 120.00589 * 2 1 3 32 32 H 1.08996 * 109.47555 * 269.97802 * 6 5 4 33 33 H 1.09006 * 109.47109 * 29.97693 * 6 5 4 34 34 H 1.09004 * 109.47442 * 149.97499 * 6 5 4 35 35 H 1.09008 * 109.47382 * 83.49057 * 11 10 8 36 36 H 1.08999 * 109.47221 * 203.49010 * 11 10 8 37 37 H 1.09003 * 109.47560 * 323.48884 * 11 10 8 38 38 H 1.08998 * 109.46867 * 210.00142 * 12 10 8 39 39 H 1.08998 * 109.46934 * 329.99605 * 12 10 8 40 40 H 1.08998 * 109.47278 * 60.00293 * 14 13 12 41 41 H 1.09004 * 109.47458 * 179.97438 * 14 13 12 42 42 H 1.09005 * 109.47564 * 300.00252 * 14 13 12 43 43 H 1.08998 * 109.46899 * 59.99336 * 15 13 12 44 44 H 1.08993 * 109.47515 * 179.97438 * 15 13 12 45 45 H 1.09001 * 109.46704 * 299.99896 * 15 13 12 46 46 H 1.08995 * 109.47268 * 300.00019 * 16 13 12 47 47 H 1.08998 * 109.46997 * 60.00157 * 16 13 12 48 48 H 0.97000 * 120.00011 * 0.02562 * 17 16 13 49 49 H 0.96999 * 119.99724 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2792 2.1171 1.0628 5 6 2.7124 3.3410 0.8932 6 6 3.0388 4.2604 2.0417 7 6 2.8432 3.7095 -0.4058 8 6 3.3055 5.0137 -0.8925 9 8 3.4513 5.9371 -0.1135 10 7 3.5633 5.1910 -2.2035 11 6 3.3686 4.0852 -3.1444 12 6 4.0384 6.4896 -2.6876 13 6 5.5674 6.5216 -2.6445 14 6 6.0417 6.3091 -1.2056 15 6 6.1261 5.4100 -3.5351 16 6 6.0636 7.8776 -3.1507 17 7 7.5277 7.9085 -3.1089 18 6 8.2008 9.0286 -3.5179 19 1 7.6523 9.8895 -3.8709 20 6 9.5881 9.0577 -3.4789 21 7 10.2564 8.0084 -3.0492 22 14 10.5063 10.5860 -4.0361 23 1 10.0995 11.7415 -3.1968 24 1 11.9679 10.3637 -3.8966 25 1 10.1814 10.8679 -5.4574 26 16 2.3503 2.3433 -1.4037 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.1489 4.8254 2.3191 33 1 3.3754 3.6710 2.8947 34 1 3.8282 4.9499 1.7423 35 1 2.3203 4.0397 -3.4398 36 1 3.9881 4.2456 -4.0268 37 1 3.6525 3.1474 -2.6668 38 1 3.7004 6.6410 -3.7127 39 1 3.6404 7.2815 -2.0531 40 1 5.6883 5.3429 -0.8455 41 1 7.1311 6.3314 -1.1750 42 1 5.6438 7.1011 -0.5711 43 1 5.7881 5.5614 -4.5602 44 1 7.2153 5.4330 -3.5049 45 1 5.7726 4.4438 -3.1750 46 1 5.7257 8.0286 -4.1759 47 1 5.6656 8.6698 -2.5166 48 1 8.0202 7.1352 -2.7923 49 1 11.2258 8.0289 -3.0216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329342285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:21 Heat of formation + Delta-G solvation = 16.403658 kcal Electronic energy + Delta-G solvation = -28012.037297 eV Core-core repulsion = 24294.424793 eV Total energy + Delta-G solvation = -3717.612504 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67739 -39.73146 -37.30049 -35.23567 -34.62213 -33.12159 -31.12138 -30.26086 -28.77355 -28.02950 -26.66652 -26.00411 -25.67304 -25.09561 -22.73786 -22.20432 -21.21240 -18.83402 -18.44379 -18.24960 -17.23100 -16.83171 -16.19620 -15.94187 -15.33927 -14.92981 -14.66309 -14.36265 -14.16493 -13.98195 -13.80956 -13.59100 -13.45591 -13.32676 -13.07238 -12.91976 -12.65229 -12.45435 -12.32634 -12.19241 -12.16500 -12.01501 -11.63016 -11.51447 -11.26034 -11.14971 -10.97235 -10.77924 -10.74415 -10.32459 -10.24172 -10.04117 -9.84072 -9.72871 -9.66166 -9.55274 -9.01386 -8.82304 -8.54357 -6.85656 -5.72082 -2.99614 0.05373 0.96654 1.36353 2.27730 2.82873 3.08817 3.46851 3.51111 3.52177 3.68805 4.38300 4.46962 4.63383 4.68684 4.73636 4.75648 4.91228 4.99458 5.11978 5.17020 5.26182 5.34577 5.37300 5.39741 5.46459 5.58046 5.59210 5.64091 5.70715 5.71944 5.77169 5.90694 5.94740 6.09696 6.15109 6.22065 6.29396 6.40570 6.52332 6.61160 6.75154 6.78980 6.95211 6.99450 7.19534 7.46702 7.73676 8.04624 8.47453 9.58408 10.17598 10.52338 11.50983 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025728 B = 0.002393 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.064254 B =11696.341436 C =11989.896794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C 0.036 3.964 4 N -0.480 5.480 5 C 0.151 3.849 6 C -0.086 4.086 7 C -0.301 4.301 8 C 0.594 3.406 9 O -0.512 6.512 10 N -0.603 5.603 11 C 0.061 3.939 12 C 0.130 3.870 13 C -0.086 4.086 14 C -0.124 4.124 15 C -0.137 4.137 16 C 0.166 3.834 17 N -0.727 5.727 18 C -0.236 4.236 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.287 1.287 26 S 0.180 5.820 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.036 0.964 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.068 0.932 45 H 0.043 0.957 46 H 0.018 0.982 47 H 0.020 0.980 48 H 0.385 0.615 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.757 -18.143 2.690 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.239 4.239 4 N -0.195 5.195 5 C 0.013 3.987 6 C -0.145 4.145 7 C -0.424 4.424 8 C 0.381 3.619 9 O -0.390 6.390 10 N -0.335 5.335 11 C -0.084 4.084 12 C 0.008 3.992 13 C -0.088 4.088 14 C -0.181 4.181 15 C -0.194 4.194 16 C 0.037 3.963 17 N -0.373 5.373 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.214 1.214 26 S 0.439 5.561 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.035 0.965 47 H 0.038 0.962 48 H 0.220 0.780 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.818 -17.972 2.445 28.373 hybrid contribution 0.980 0.926 0.374 1.400 sum -20.838 -17.046 2.820 27.069 Atomic orbital electron populations 1.21766 0.93279 1.02699 1.02764 1.20276 0.96826 0.87582 1.04446 1.27870 1.00011 1.02241 0.93757 1.66136 1.15629 1.05801 1.31954 1.20641 0.93874 0.90474 0.93685 1.20614 1.03532 0.96890 0.93501 1.25487 1.19047 1.00653 0.97220 1.16658 0.77439 0.85595 0.82184 1.90829 1.52662 1.41094 1.54378 1.47564 1.66050 1.13414 1.06460 1.22157 1.02300 0.89144 0.94845 1.21636 0.94386 0.83459 0.99766 1.21119 0.93353 0.97351 0.96931 1.21721 1.01558 1.00333 0.94500 1.21885 1.02581 0.96668 0.98261 1.20578 0.86675 0.92245 0.96759 1.42376 0.99338 1.17092 1.78459 1.19190 0.89193 0.93328 1.35054 0.91325 1.24721 0.96369 0.97640 1.02378 1.69650 1.06556 1.28995 1.53180 0.86265 0.78875 0.82673 0.78367 1.21328 1.21768 1.21366 1.84265 1.58104 1.04084 1.09599 0.91217 0.91905 0.92318 0.89455 0.88762 0.90067 0.90873 0.88396 0.91819 0.88353 0.91054 0.90256 0.89351 0.94497 0.92065 0.92378 0.93156 0.91326 0.93796 0.96465 0.96210 0.78003 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.16 0.37 -0.39 16 2 C -0.05 -0.31 6.51 -27.89 -0.18 -0.49 16 3 C 0.04 0.34 6.64 -13.29 -0.09 0.25 16 4 N -0.48 -5.84 10.50 -7.71 -0.08 -5.92 16 5 C 0.15 1.95 6.79 -83.90 -0.57 1.38 16 6 C -0.09 -1.05 9.59 36.00 0.35 -0.70 16 7 C -0.30 -3.76 6.23 -37.10 -0.23 -3.99 16 8 C 0.59 8.38 5.98 -12.85 -0.08 8.30 16 9 O -0.51 -8.56 12.27 5.20 0.06 -8.49 16 10 N -0.60 -7.40 2.40 -183.13 -0.44 -7.84 16 11 C 0.06 0.54 7.64 59.84 0.46 0.99 16 12 C 0.13 1.75 4.57 -4.04 -0.02 1.74 16 13 C -0.09 -1.42 0.60 -154.51 -0.09 -1.51 16 14 C -0.12 -2.26 6.98 37.15 0.26 -2.00 16 15 C -0.14 -2.12 7.07 37.16 0.26 -1.86 16 16 C 0.17 3.36 5.15 -4.04 -0.02 3.34 16 17 N -0.73 -18.50 5.00 -59.91 -0.30 -18.80 16 18 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 22 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 S 0.18 1.58 18.13 -107.50 -1.95 -0.37 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.34 6.25 -51.93 -0.32 1.01 16 35 H 0.06 0.45 7.81 -51.92 -0.41 0.04 16 36 H 0.10 0.79 6.35 -51.93 -0.33 0.46 16 37 H 0.07 0.61 4.63 -23.95 -0.11 0.50 16 38 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.09 1.30 7.41 -51.93 -0.38 0.92 16 40 H 0.04 0.64 6.16 -51.93 -0.32 0.32 16 41 H 0.06 1.26 6.86 -51.93 -0.36 0.91 16 42 H 0.06 1.12 7.75 -51.93 -0.40 0.72 16 43 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 44 H 0.07 1.28 6.86 -51.93 -0.36 0.93 16 45 H 0.04 0.59 6.09 -51.93 -0.32 0.27 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.38 10.27 5.36 -40.82 -0.22 10.05 16 49 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 388.46 15.07 5.85 5.85 Total: -1.00 -33.46 388.46 -8.70 -42.16 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -7.71 Total: 5.86 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 0.17 Total: -2.32 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.10 Total: -60.40 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.06 Total: -8.49 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.95 Total: -0.37 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.46 -8.70 -42.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329342285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.563 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds