Wall clock time and date at job start Tue Mar 31 2020 23:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47446 * 2 1 4 4 N 1.29432 * 124.80602 * 90.02785 * 3 2 1 5 5 C 1.30939 * 117.36787 * 179.97438 * 4 3 2 6 6 C 1.50691 * 122.90752 * 180.02562 * 5 4 3 7 7 C 1.35666 * 114.18893 * 359.97438 * 5 4 3 8 8 C 1.46679 * 126.12853 * 180.02562 * 7 5 4 9 9 O 1.21685 * 120.00334 * 350.66450 * 8 7 5 10 10 N 1.34783 * 119.99802 * 170.94571 * 8 7 5 11 11 C 1.46489 * 120.00102 * 0.63206 * 10 8 7 12 12 C 1.46506 * 119.99827 * 180.63604 * 10 8 7 13 13 C 1.52997 * 109.47056 * 89.99581 * 12 10 8 14 14 C 1.52993 * 109.47316 * 299.99898 * 13 12 10 15 15 C 1.53000 * 109.47192 * 60.00174 * 13 12 10 16 16 C 1.53007 * 109.46775 * 179.97438 * 13 12 10 17 17 N 1.46503 * 109.46886 * 179.97438 * 16 13 12 18 18 C 1.36931 * 120.00021 * 179.97438 * 17 16 13 19 19 H 1.08007 * 119.99956 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00457 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99492 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00310 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47357 * 59.99836 * 22 20 18 24 24 H 1.48502 * 109.47016 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.46845 * 299.99770 * 22 20 18 26 26 S 1.70956 * 124.80490 * 270.31782 * 3 2 1 27 27 H 1.08993 * 109.47531 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46907 * 300.00201 * 1 2 3 29 29 H 1.09003 * 109.47375 * 59.99411 * 1 2 3 30 30 H 1.09001 * 109.46907 * 239.99799 * 2 1 3 31 31 H 1.09003 * 109.47375 * 120.00589 * 2 1 3 32 32 H 1.08996 * 109.47555 * 269.97802 * 6 5 4 33 33 H 1.09006 * 109.47109 * 29.97693 * 6 5 4 34 34 H 1.09004 * 109.47442 * 149.97499 * 6 5 4 35 35 H 1.09008 * 109.47382 * 83.49057 * 11 10 8 36 36 H 1.08999 * 109.47221 * 203.49010 * 11 10 8 37 37 H 1.09003 * 109.47560 * 323.48884 * 11 10 8 38 38 H 1.08998 * 109.46867 * 210.00142 * 12 10 8 39 39 H 1.08998 * 109.46934 * 329.99605 * 12 10 8 40 40 H 1.08998 * 109.47278 * 60.00293 * 14 13 12 41 41 H 1.09004 * 109.47458 * 179.97438 * 14 13 12 42 42 H 1.09005 * 109.47564 * 300.00252 * 14 13 12 43 43 H 1.08998 * 109.46899 * 59.99336 * 15 13 12 44 44 H 1.08993 * 109.47515 * 179.97438 * 15 13 12 45 45 H 1.09001 * 109.46704 * 299.99896 * 15 13 12 46 46 H 1.08995 * 109.47268 * 300.00019 * 16 13 12 47 47 H 1.08998 * 109.46997 * 60.00157 * 16 13 12 48 48 H 0.97000 * 120.00011 * 0.02562 * 17 16 13 49 49 H 0.96999 * 119.99724 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2792 2.1171 1.0628 5 6 2.7124 3.3410 0.8932 6 6 3.0388 4.2604 2.0417 7 6 2.8432 3.7095 -0.4058 8 6 3.3055 5.0137 -0.8925 9 8 3.4513 5.9371 -0.1135 10 7 3.5633 5.1910 -2.2035 11 6 3.3686 4.0852 -3.1444 12 6 4.0384 6.4896 -2.6876 13 6 5.5674 6.5216 -2.6445 14 6 6.0417 6.3091 -1.2056 15 6 6.1261 5.4100 -3.5351 16 6 6.0636 7.8776 -3.1507 17 7 7.5277 7.9085 -3.1089 18 6 8.2008 9.0286 -3.5179 19 1 7.6523 9.8895 -3.8709 20 6 9.5881 9.0577 -3.4789 21 7 10.2564 8.0084 -3.0492 22 14 10.5063 10.5860 -4.0361 23 1 10.0995 11.7415 -3.1968 24 1 11.9679 10.3637 -3.8966 25 1 10.1814 10.8679 -5.4574 26 16 2.3503 2.3433 -1.4037 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.1489 4.8254 2.3191 33 1 3.3754 3.6710 2.8947 34 1 3.8282 4.9499 1.7423 35 1 2.3203 4.0397 -3.4398 36 1 3.9881 4.2456 -4.0268 37 1 3.6525 3.1474 -2.6668 38 1 3.7004 6.6410 -3.7127 39 1 3.6404 7.2815 -2.0531 40 1 5.6883 5.3429 -0.8455 41 1 7.1311 6.3314 -1.1750 42 1 5.6438 7.1011 -0.5711 43 1 5.7881 5.5614 -4.5602 44 1 7.2153 5.4330 -3.5049 45 1 5.7726 4.4438 -3.1750 46 1 5.7257 8.0286 -4.1759 47 1 5.6656 8.6698 -2.5166 48 1 8.0202 7.1352 -2.7923 49 1 11.2258 8.0289 -3.0216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329342285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:21 Heat of formation + Delta-G solvation = -4.749293 kcal Electronic energy + Delta-G solvation = -28012.954558 eV Core-core repulsion = 24294.424793 eV Total energy + Delta-G solvation = -3718.529765 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.65304 -40.68248 -38.65828 -36.53259 -35.27950 -34.87673 -32.31299 -31.80932 -29.82151 -28.99062 -28.05767 -27.36440 -26.72772 -26.20293 -24.51672 -22.84335 -22.28223 -20.01823 -19.61013 -19.21584 -19.07434 -17.73885 -17.26177 -17.01811 -16.55417 -16.20324 -15.77654 -15.56556 -15.36058 -15.19175 -14.87867 -14.73040 -14.48895 -14.41464 -14.24725 -13.95154 -13.89002 -13.80756 -13.63902 -13.16522 -12.95588 -12.91163 -12.78252 -12.58578 -12.55893 -12.50009 -12.36390 -12.27382 -12.15562 -12.05784 -11.68615 -11.66252 -11.51391 -10.97393 -10.91225 -10.58033 -10.37210 -9.94369 -9.46057 -8.95950 -7.93299 -5.20919 -0.77762 0.19222 0.57478 1.38543 1.46602 1.50125 1.55958 1.85738 2.10524 2.57403 2.98741 3.39809 3.48852 3.81538 3.83288 3.90359 3.92042 4.04754 4.07871 4.23411 4.28689 4.31220 4.42390 4.47943 4.55721 4.57881 4.65451 4.71706 4.75135 4.77624 4.81353 4.87492 4.90795 4.93789 4.99904 5.07077 5.13507 5.15719 5.18203 5.25862 5.34163 5.43201 5.45979 5.49713 5.54062 6.21929 6.28988 6.65606 7.02592 7.35510 8.13205 8.36461 9.30320 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025728 B = 0.002393 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.064254 B =11696.341436 C =11989.896794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C 0.031 3.969 4 N -0.509 5.509 5 C 0.137 3.863 6 C -0.083 4.083 7 C -0.334 4.334 8 C 0.588 3.412 9 O -0.551 6.551 10 N -0.600 5.600 11 C 0.051 3.949 12 C 0.138 3.862 13 C -0.077 4.077 14 C -0.109 4.109 15 C -0.128 4.128 16 C 0.163 3.837 17 N -0.739 5.739 18 C -0.242 4.242 19 H 0.075 0.925 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.974 3.026 23 H -0.281 1.281 24 H -0.296 1.296 25 H -0.275 1.275 26 S 0.257 5.743 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.028 0.972 42 H 0.039 0.961 43 H 0.070 0.930 44 H 0.031 0.969 45 H 0.067 0.933 46 H 0.033 0.967 47 H 0.011 0.989 48 H 0.375 0.625 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.741 -19.739 0.446 30.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.093 4.093 3 C -0.243 4.243 4 N -0.224 5.224 5 C -0.002 4.002 6 C -0.141 4.141 7 C -0.458 4.458 8 C 0.376 3.624 9 O -0.431 6.431 10 N -0.331 5.331 11 C -0.093 4.093 12 C 0.015 3.985 13 C -0.078 4.078 14 C -0.166 4.166 15 C -0.185 4.185 16 C 0.036 3.964 17 N -0.383 5.383 18 C -0.374 4.374 19 H 0.093 0.907 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.803 3.197 23 H -0.207 1.207 24 H -0.223 1.223 25 H -0.201 1.201 26 S 0.517 5.483 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.132 0.868 37 H 0.093 0.907 38 H 0.131 0.869 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.050 0.950 45 H 0.086 0.914 46 H 0.051 0.949 47 H 0.029 0.971 48 H 0.209 0.791 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.857 -19.587 0.159 30.868 hybrid contribution 1.501 1.337 1.073 2.279 sum -22.355 -18.250 1.232 28.885 Atomic orbital electron populations 1.21768 0.92407 1.03907 1.02166 1.20508 0.97427 0.85611 1.05800 1.28583 0.98334 1.03470 0.93903 1.66180 1.17135 1.05723 1.33389 1.20735 0.94327 0.91052 0.94056 1.20509 1.02917 0.96738 0.93984 1.25456 1.20439 1.01625 0.98279 1.16972 0.77086 0.85871 0.82476 1.90807 1.54298 1.42527 1.55467 1.47594 1.65239 1.13832 1.06476 1.22451 1.04460 0.87886 0.94461 1.21463 0.91614 0.84039 1.01343 1.21015 0.95710 0.95705 0.95377 1.21550 0.99125 1.00045 0.95913 1.21804 1.00113 0.97337 0.99276 1.20737 0.83920 0.94300 0.97417 1.42575 1.01443 1.16082 1.78186 1.19617 0.89742 0.94178 1.33887 0.90697 1.25558 0.97382 1.00669 1.03391 1.69820 1.06329 1.31058 1.54986 0.85203 0.77009 0.79139 0.78362 1.20741 1.22277 1.20102 1.83803 1.56237 1.00979 1.07275 0.89145 0.93617 0.91800 0.86755 0.88769 0.89895 0.90181 0.90474 0.89163 0.86800 0.90733 0.86942 0.90854 0.93765 0.95283 0.94202 0.91079 0.94970 0.91419 0.94915 0.97125 0.79129 0.94123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.89 71.98 0.71 -0.40 16 2 C -0.05 -0.50 6.51 29.85 0.19 -0.31 16 3 C 0.03 0.52 6.64 88.46 0.59 1.10 16 4 N -0.51 -12.02 10.50 -178.29 -1.87 -13.90 16 5 C 0.14 3.56 6.79 42.09 0.29 3.84 16 6 C -0.08 -2.12 9.59 71.23 0.68 -1.43 16 7 C -0.33 -8.07 6.23 23.88 0.15 -7.93 16 8 C 0.59 16.35 5.98 86.45 0.52 16.87 16 9 O -0.55 -19.09 12.27 -4.30 -0.05 -19.14 16 10 N -0.60 -13.56 2.40 -851.51 -2.04 -15.60 16 11 C 0.05 0.71 7.64 127.77 0.98 1.68 16 12 C 0.14 3.50 4.57 86.38 0.40 3.89 16 13 C -0.08 -2.49 0.60 -52.18 -0.03 -2.52 16 14 C -0.11 -4.13 6.98 71.98 0.50 -3.62 16 15 C -0.13 -3.78 7.07 71.98 0.51 -3.28 16 16 C 0.16 6.59 5.15 86.38 0.44 7.04 16 17 N -0.74 -38.27 5.00 -343.44 -1.72 -39.98 16 18 C -0.24 -13.80 9.99 84.03 0.84 -12.96 16 19 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 21 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 22 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 26 S 0.26 3.74 18.13 -56.49 -1.02 2.71 16 27 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.08 2.29 6.25 -2.38 -0.01 2.27 16 35 H 0.09 0.83 7.81 -2.38 -0.02 0.82 16 36 H 0.11 1.29 6.35 -2.39 -0.02 1.28 16 37 H 0.08 1.00 4.63 -20.17 -0.09 0.90 16 38 H 0.11 2.14 8.07 -2.39 -0.02 2.13 16 39 H 0.07 2.12 7.41 -2.39 -0.02 2.11 16 40 H 0.04 1.58 6.16 -2.39 -0.01 1.56 16 41 H 0.03 1.25 6.86 -2.38 -0.02 1.24 16 42 H 0.04 1.62 7.75 -2.38 -0.02 1.60 16 43 H 0.07 1.81 8.07 -2.39 -0.02 1.79 16 44 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 45 H 0.07 1.66 6.09 -2.39 -0.01 1.64 16 46 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.38 20.75 5.36 -92.71 -0.50 20.26 16 49 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -75.41 388.46 3.21 -72.20 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.38 Total: 27.16 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 7.23 Total: -2.12 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -5.35 Total: -129.90 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.05 Total: -19.14 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.02 Total: 2.71 kcal Total: -75.41 3.21 -72.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329342285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.448 kcal (2) G-P(sol) polarization free energy of solvation -75.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds