Wall clock time and date at job start Tue Mar 31 2020 23:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47218 * 2 1 4 4 C 1.53002 * 109.46955 * 240.00065 * 2 1 3 5 5 O 1.45196 * 109.46846 * 120.00157 * 2 1 3 6 6 C 1.34637 * 116.99920 * 60.00158 * 5 2 1 7 7 O 1.21505 * 120.00411 * 359.97438 * 6 5 2 8 8 N 1.34780 * 119.99416 * 179.97438 * 6 5 2 9 9 C 1.46503 * 119.99529 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.53858 * 36.15623 * 9 8 6 11 11 C 1.54887 * 110.48676 * 273.54656 * 9 8 6 12 12 C 1.54887 * 102.75000 * 203.38122 * 11 9 8 13 13 H 1.08998 * 110.48521 * 279.13044 * 12 11 9 14 14 C 1.50701 * 110.48739 * 156.61977 * 12 11 9 15 15 O 1.20825 * 120.00071 * 243.23870 * 14 12 11 16 16 O 1.34233 * 120.00152 * 63.24326 * 14 12 11 17 17 C 1.45194 * 116.99930 * 179.97438 * 16 14 12 18 18 C 1.53006 * 109.46979 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.47184 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99819 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00046 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00310 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00304 * 23 21 19 27 27 C 1.54265 * 104.31439 * 37.87358 * 12 11 9 28 28 H 1.09000 * 117.41240 * 116.43662 * 27 12 11 29 29 C 1.52857 * 118.28649 * 272.43125 * 27 12 11 30 30 C 1.52999 * 60.50002 * 93.42585 * 29 27 12 31 31 H 1.08998 * 119.75421 * 111.14674 * 30 29 27 32 32 H 1.08999 * 109.46981 * 300.00197 * 1 2 3 33 33 H 1.09000 * 109.46822 * 59.99596 * 1 2 3 34 34 H 1.08998 * 109.47032 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.47268 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47114 * 300.00584 * 3 2 1 37 37 H 1.09003 * 109.46858 * 60.00167 * 3 2 1 38 38 H 1.09000 * 109.47134 * 300.00400 * 4 2 1 39 39 H 1.09006 * 109.46882 * 60.00106 * 4 2 1 40 40 H 1.09001 * 109.46814 * 180.02562 * 4 2 1 41 41 H 0.96999 * 120.00598 * 0.02562 * 8 6 5 42 42 H 1.09000 * 110.75719 * 85.06528 * 11 9 8 43 43 H 1.09000 * 110.91684 * 321.76913 * 11 9 8 44 44 H 1.09001 * 109.46972 * 59.99949 * 17 16 14 45 45 H 1.09001 * 109.47510 * 299.99380 * 17 16 14 46 46 H 1.09001 * 109.47002 * 60.00345 * 18 17 16 47 47 H 1.08993 * 109.46955 * 299.99908 * 18 17 16 48 48 H 0.97001 * 119.99934 * 359.97438 * 22 21 19 49 49 H 1.08997 * 117.40710 * 345.75866 * 29 27 12 50 50 H 1.09001 * 117.44227 * 201.07794 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0680 -2.6657 2.4166 9 6 1.6739 -4.0669 2.5830 10 1 1.6409 -4.5721 1.6178 11 6 0.3004 -4.1631 3.2924 12 6 0.3343 -5.5822 3.9120 13 1 0.0827 -6.3320 3.1619 14 6 -0.6120 -5.6698 5.0816 15 8 -0.1838 -5.8881 6.1901 16 8 -1.9307 -5.5055 4.8919 17 6 -2.7825 -5.6037 6.0636 18 6 -4.2409 -5.3896 5.6533 19 6 -5.1251 -5.4921 6.8693 20 1 -4.6903 -5.6898 7.8380 21 6 -6.4889 -5.3326 6.7454 22 7 -7.0183 -5.0914 5.5659 23 14 -7.5848 -5.4590 8.2528 24 1 -9.0004 -5.2513 7.8546 25 1 -7.1906 -4.4218 9.2398 26 1 -7.4350 -6.8048 8.8624 27 6 1.7927 -5.7580 4.3830 28 1 1.9635 -5.8778 5.4529 29 6 2.8150 -6.3038 3.3864 30 6 2.6447 -4.7910 3.5386 31 1 3.4430 -4.1990 3.9862 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 3.1301 1.4425 0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 1.6766 -1.7489 -1.2493 39 1 1.6766 -0.2073 -2.1393 40 1 3.1300 -0.7216 -1.2490 41 1 2.6276 -2.2369 3.0828 42 1 -0.5133 -4.0752 2.5724 43 1 0.2098 -3.4043 4.0697 44 1 -2.4935 -4.8419 6.7877 45 1 -2.6720 -6.5913 6.5115 46 1 -4.5301 -6.1511 4.9290 47 1 -4.3511 -4.4019 5.2057 48 1 -6.4492 -5.0254 4.7832 49 1 2.4317 -6.7637 2.4755 50 1 3.7227 -6.7508 3.7918 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344581416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:24 Heat of formation + Delta-G solvation = -160.403970 kcal Electronic energy + Delta-G solvation = -29716.338969 eV Core-core repulsion = 25516.013889 eV Total energy + Delta-G solvation = -4200.325080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.22475 -40.57775 -39.24616 -37.37479 -36.15994 -34.82191 -33.98903 -33.70570 -31.92781 -29.99650 -28.18966 -27.72154 -27.63965 -24.69365 -23.71216 -22.57003 -22.18066 -21.17666 -20.89213 -20.22177 -19.59512 -18.34025 -17.78972 -16.98346 -16.54980 -16.46735 -16.37198 -16.09087 -15.26136 -15.14448 -14.68186 -14.55145 -14.40946 -13.77639 -13.74930 -13.63168 -13.44079 -13.16164 -12.81944 -12.74356 -12.39290 -12.22053 -12.18281 -11.99651 -11.93701 -11.81196 -11.73191 -11.60870 -11.59376 -11.30655 -11.11303 -10.71694 -10.70839 -10.62939 -10.33919 -10.25379 -10.16472 -10.04566 -9.91172 -9.77763 -9.42942 -8.74293 -8.41154 -6.46213 -4.17209 1.85658 2.45955 2.60663 3.02100 3.22454 3.41660 3.43275 3.62195 3.79362 3.98655 4.41108 4.41756 4.45937 4.51984 4.56575 4.60380 4.68611 4.84807 4.89920 5.01655 5.12729 5.15909 5.18452 5.24727 5.32468 5.33290 5.35471 5.38546 5.45870 5.48503 5.57862 5.66196 5.69252 5.76680 5.86457 5.95351 5.96034 5.97664 6.01107 6.06302 6.18011 6.28064 6.47946 6.85287 7.14196 7.29209 7.33059 7.99600 8.13643 8.14480 8.34233 8.76172 9.55471 10.95234 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.010532 B = 0.002377 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.884116 B =11778.087210 C =13911.288273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.366 6.366 6 C 0.651 3.349 7 O -0.563 6.563 8 N -0.702 5.702 9 C 0.191 3.809 10 H 0.104 0.896 11 C -0.121 4.121 12 C -0.059 4.059 13 H 0.115 0.885 14 C 0.467 3.533 15 O -0.514 6.514 16 O -0.357 6.357 17 C 0.082 3.918 18 C 0.012 3.988 19 C -0.608 4.608 20 H 0.053 0.947 21 C 0.019 3.981 22 N -0.907 5.907 23 Si 1.073 2.927 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.286 1.286 27 C -0.147 4.147 28 H 0.134 0.866 29 C -0.137 4.137 30 C -0.180 4.180 31 H 0.121 0.879 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.407 0.593 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.019 0.981 47 H 0.019 0.981 48 H 0.271 0.729 49 H 0.099 0.901 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.625 7.808 -12.240 28.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.281 6.281 6 C 0.405 3.595 7 O -0.452 6.452 8 N -0.360 5.360 9 C 0.087 3.913 10 H 0.122 0.878 11 C -0.160 4.160 12 C -0.079 4.079 13 H 0.133 0.867 14 C 0.309 3.691 15 O -0.404 6.404 16 O -0.273 6.273 17 C 0.009 3.991 18 C -0.025 4.025 19 C -0.646 4.646 20 H 0.071 0.929 21 C -0.185 4.185 22 N -0.542 5.542 23 Si 0.900 3.100 24 H -0.206 1.206 25 H -0.213 1.213 26 H -0.213 1.213 27 C -0.165 4.165 28 H 0.151 0.849 29 C -0.174 4.174 30 C -0.199 4.199 31 H 0.139 0.861 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.242 0.758 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.038 0.962 47 H 0.037 0.963 48 H 0.081 0.919 49 H 0.117 0.883 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 22.753 7.657 -11.869 26.781 hybrid contribution 1.855 0.132 0.015 1.859 sum 24.607 7.789 -11.854 28.403 Atomic orbital electron populations 1.22533 0.93719 1.05342 1.02668 1.22090 0.94561 0.91433 0.81923 1.21866 1.02113 0.92571 1.03253 1.22518 1.01390 1.03600 0.96522 1.86293 1.71565 1.23559 1.46649 1.18065 0.78767 0.80576 0.82130 1.90920 1.40626 1.70317 1.43331 1.44636 1.55570 1.12161 1.23681 1.21333 0.92117 0.78711 0.99124 0.87842 1.23071 0.97931 0.94615 1.00380 1.21304 0.91487 1.00076 0.95005 0.86669 1.23144 0.83048 0.72967 0.89891 1.90609 1.78416 1.44910 1.26423 1.86521 1.17537 1.81077 1.42132 1.23468 0.90450 1.01092 0.84066 1.19294 0.87452 0.97438 0.98349 1.21822 0.93878 1.55036 0.93843 0.92900 1.25903 0.96413 0.93443 1.02776 1.70772 1.39406 1.44558 0.99466 0.83487 0.75970 0.76622 0.73873 1.20589 1.21285 1.21272 1.23214 0.89090 1.04725 0.99436 0.84854 1.23080 1.00247 0.93435 1.00622 1.23425 1.01682 0.92582 1.02186 0.86110 0.92011 0.91073 0.89197 0.91551 0.90077 0.91402 0.89318 0.91090 0.92279 0.75837 0.88836 0.90055 0.92177 0.92096 0.96229 0.96258 0.91869 0.88274 0.87468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 8.37 37.16 0.31 -1.46 16 2 C 0.14 1.22 1.13 -90.62 -0.10 1.12 16 3 C -0.14 -0.90 8.85 37.16 0.33 -0.57 16 4 C -0.18 -1.55 8.37 37.16 0.31 -1.23 16 5 O -0.37 -3.83 9.94 -40.32 -0.40 -4.23 16 6 C 0.65 7.41 8.05 54.06 0.44 7.84 16 7 O -0.56 -7.64 11.59 -19.28 -0.22 -7.87 16 8 N -0.70 -6.41 5.18 -57.11 -0.30 -6.71 16 9 C 0.19 1.78 2.95 -66.27 -0.20 1.59 16 10 H 0.10 1.02 7.67 -51.93 -0.40 0.62 16 11 C -0.12 -1.41 5.98 -24.74 -0.15 -1.56 16 12 C -0.06 -0.72 3.15 -90.11 -0.28 -1.01 16 13 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 14 C 0.47 8.02 7.25 36.01 0.26 8.28 16 15 O -0.51 -9.96 15.27 -18.75 -0.29 -10.25 16 16 O -0.36 -7.16 10.22 -39.27 -0.40 -7.56 16 17 C 0.08 1.86 5.40 37.16 0.20 2.06 16 18 C 0.01 0.31 4.66 -27.88 -0.13 0.18 16 19 C -0.61 -17.49 9.11 -34.44 -0.31 -17.81 16 20 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 21 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 22 N -0.91 -27.84 13.65 55.43 0.76 -27.08 16 23 Si 1.07 25.24 29.90 -169.99 -5.08 20.16 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 27 C -0.15 -1.49 6.21 -89.47 -0.56 -2.04 16 28 H 0.13 1.56 7.06 -51.93 -0.37 1.19 16 29 C -0.14 -1.00 10.06 -26.81 -0.27 -1.27 16 30 C -0.18 -1.42 6.53 -89.39 -0.58 -2.00 16 31 H 0.12 0.78 8.02 -51.93 -0.42 0.36 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.08 5.88 -51.93 -0.31 0.78 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.95 5.88 -51.93 -0.31 0.64 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.41 2.85 8.64 -40.82 -0.35 2.50 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.08 1.01 8.05 -51.93 -0.42 0.60 16 44 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 45 H 0.06 1.38 8.13 -51.93 -0.42 0.95 16 46 H 0.02 0.53 8.01 -51.93 -0.42 0.12 16 47 H 0.02 0.52 8.01 -51.93 -0.42 0.11 16 48 H 0.27 8.29 7.22 -40.82 -0.29 7.99 16 49 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 406.63 15.07 6.13 6.13 Total: -1.00 -33.77 406.63 -9.02 -42.79 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -8.39 Total: 2.04 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -0.83 Total: -7.42 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.46 Total: -33.79 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -1.31 Total: -29.90 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.77 -9.02 -42.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344581416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.611 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds