Wall clock time and date at job start Tue Mar 31 2020 23:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47218 * 2 1 4 4 C 1.53002 * 109.46955 * 240.00065 * 2 1 3 5 5 O 1.45196 * 109.46846 * 120.00157 * 2 1 3 6 6 C 1.34637 * 116.99920 * 60.00158 * 5 2 1 7 7 O 1.21505 * 120.00411 * 359.97438 * 6 5 2 8 8 N 1.34780 * 119.99416 * 179.97438 * 6 5 2 9 9 C 1.46503 * 119.99529 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.53858 * 36.15623 * 9 8 6 11 11 C 1.54887 * 110.48676 * 273.54656 * 9 8 6 12 12 C 1.54887 * 102.75000 * 203.38122 * 11 9 8 13 13 H 1.08998 * 110.48521 * 279.13044 * 12 11 9 14 14 C 1.50701 * 110.48739 * 156.61977 * 12 11 9 15 15 O 1.20825 * 120.00071 * 243.23870 * 14 12 11 16 16 O 1.34233 * 120.00152 * 63.24326 * 14 12 11 17 17 C 1.45194 * 116.99930 * 179.97438 * 16 14 12 18 18 C 1.53006 * 109.46979 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.47184 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99819 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00046 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00310 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00304 * 23 21 19 27 27 C 1.54265 * 104.31439 * 37.87358 * 12 11 9 28 28 H 1.09000 * 117.41240 * 116.43662 * 27 12 11 29 29 C 1.52857 * 118.28649 * 272.43125 * 27 12 11 30 30 C 1.52999 * 60.50002 * 93.42585 * 29 27 12 31 31 H 1.08998 * 119.75421 * 111.14674 * 30 29 27 32 32 H 1.08999 * 109.46981 * 300.00197 * 1 2 3 33 33 H 1.09000 * 109.46822 * 59.99596 * 1 2 3 34 34 H 1.08998 * 109.47032 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.47268 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47114 * 300.00584 * 3 2 1 37 37 H 1.09003 * 109.46858 * 60.00167 * 3 2 1 38 38 H 1.09000 * 109.47134 * 300.00400 * 4 2 1 39 39 H 1.09006 * 109.46882 * 60.00106 * 4 2 1 40 40 H 1.09001 * 109.46814 * 180.02562 * 4 2 1 41 41 H 0.96999 * 120.00598 * 0.02562 * 8 6 5 42 42 H 1.09000 * 110.75719 * 85.06528 * 11 9 8 43 43 H 1.09000 * 110.91684 * 321.76913 * 11 9 8 44 44 H 1.09001 * 109.46972 * 59.99949 * 17 16 14 45 45 H 1.09001 * 109.47510 * 299.99380 * 17 16 14 46 46 H 1.09001 * 109.47002 * 60.00345 * 18 17 16 47 47 H 1.08993 * 109.46955 * 299.99908 * 18 17 16 48 48 H 0.97001 * 119.99934 * 359.97438 * 22 21 19 49 49 H 1.08997 * 117.40710 * 345.75866 * 29 27 12 50 50 H 1.09001 * 117.44227 * 201.07794 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0680 -2.6657 2.4166 9 6 1.6739 -4.0669 2.5830 10 1 1.6409 -4.5721 1.6178 11 6 0.3004 -4.1631 3.2924 12 6 0.3343 -5.5822 3.9120 13 1 0.0827 -6.3320 3.1619 14 6 -0.6120 -5.6698 5.0816 15 8 -0.1838 -5.8881 6.1901 16 8 -1.9307 -5.5055 4.8919 17 6 -2.7825 -5.6037 6.0636 18 6 -4.2409 -5.3896 5.6533 19 6 -5.1251 -5.4921 6.8693 20 1 -4.6903 -5.6898 7.8380 21 6 -6.4889 -5.3326 6.7454 22 7 -7.0183 -5.0914 5.5659 23 14 -7.5848 -5.4590 8.2528 24 1 -9.0004 -5.2513 7.8546 25 1 -7.1906 -4.4218 9.2398 26 1 -7.4350 -6.8048 8.8624 27 6 1.7927 -5.7580 4.3830 28 1 1.9635 -5.8778 5.4529 29 6 2.8150 -6.3038 3.3864 30 6 2.6447 -4.7910 3.5386 31 1 3.4430 -4.1990 3.9862 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 3.1301 1.4425 0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 1.6766 -1.7489 -1.2493 39 1 1.6766 -0.2073 -2.1393 40 1 3.1300 -0.7216 -1.2490 41 1 2.6276 -2.2369 3.0828 42 1 -0.5133 -4.0752 2.5724 43 1 0.2098 -3.4043 4.0697 44 1 -2.4935 -4.8419 6.7877 45 1 -2.6720 -6.5913 6.5115 46 1 -4.5301 -6.1511 4.9290 47 1 -4.3511 -4.4019 5.2057 48 1 -6.4492 -5.0254 4.7832 49 1 2.4317 -6.7637 2.4755 50 1 3.7227 -6.7508 3.7918 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344581416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:24 Heat of formation + Delta-G solvation = -180.370211 kcal Electronic energy + Delta-G solvation = -29717.204770 eV Core-core repulsion = 25516.013889 eV Total energy + Delta-G solvation = -4201.190881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.17505 -41.68322 -40.36171 -38.22995 -37.73014 -35.86651 -35.66927 -34.71005 -33.00486 -31.91717 -29.15869 -28.36167 -28.28914 -26.70302 -24.72531 -23.79319 -23.23185 -22.80251 -21.75456 -21.08945 -20.54574 -19.29272 -19.14675 -18.55959 -18.13069 -17.70652 -17.42259 -17.16088 -16.35707 -16.10839 -15.67851 -15.53046 -15.42466 -15.25248 -15.11408 -14.95835 -14.44002 -14.21689 -13.90563 -13.84232 -13.58268 -13.35037 -13.24019 -13.06743 -12.92151 -12.86122 -12.81323 -12.60971 -12.51799 -12.48357 -12.32353 -12.19606 -11.95214 -11.89446 -11.63622 -11.61682 -11.42397 -11.38164 -11.10887 -10.90473 -10.78937 -10.63163 -10.27369 -8.80442 -6.53105 0.99222 1.14342 1.50646 1.60360 1.61035 1.73155 1.80569 2.50875 2.53242 3.05579 3.06685 3.16932 3.40457 3.75027 3.79214 3.80056 3.89118 3.94950 3.97385 3.99880 4.02158 4.06278 4.11995 4.22347 4.37158 4.44657 4.48996 4.54763 4.61999 4.70799 4.76972 4.83809 4.84506 4.88528 4.91109 4.92853 4.99103 5.04977 5.12879 5.14710 5.22095 5.28551 5.30901 5.38758 5.45884 5.57477 5.78257 6.03513 6.36831 6.41382 6.60557 7.29680 7.31646 8.61401 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.010532 B = 0.002377 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.884116 B =11778.087210 C =13911.288273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.126 3.874 3 C -0.136 4.136 4 C -0.178 4.178 5 O -0.368 6.368 6 C 0.646 3.354 7 O -0.589 6.589 8 N -0.692 5.692 9 C 0.198 3.802 10 H 0.103 0.897 11 C -0.121 4.121 12 C -0.051 4.051 13 H 0.133 0.867 14 C 0.464 3.536 15 O -0.535 6.535 16 O -0.367 6.367 17 C 0.096 3.904 18 C 0.015 3.985 19 C -0.626 4.626 20 H 0.057 0.943 21 C -0.032 4.032 22 N -0.930 5.930 23 Si 1.123 2.877 24 H -0.280 1.280 25 H -0.267 1.267 26 H -0.266 1.266 27 C -0.169 4.169 28 H 0.118 0.882 29 C -0.114 4.114 30 C -0.163 4.163 31 H 0.143 0.857 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.418 0.582 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.003 0.997 47 H 0.001 0.999 48 H 0.257 0.743 49 H 0.110 0.890 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.751 8.135 -12.149 30.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.090 3.910 3 C -0.193 4.193 4 C -0.235 4.235 5 O -0.283 6.283 6 C 0.399 3.601 7 O -0.480 6.480 8 N -0.351 5.351 9 C 0.094 3.906 10 H 0.121 0.879 11 C -0.160 4.160 12 C -0.070 4.070 13 H 0.150 0.850 14 C 0.308 3.692 15 O -0.425 6.425 16 O -0.283 6.283 17 C 0.023 3.977 18 C -0.022 4.022 19 C -0.664 4.664 20 H 0.076 0.924 21 C -0.230 4.230 22 N -0.566 5.566 23 Si 0.942 3.058 24 H -0.205 1.205 25 H -0.192 1.192 26 H -0.191 1.191 27 C -0.188 4.188 28 H 0.136 0.864 29 C -0.151 4.151 30 C -0.181 4.181 31 H 0.161 0.839 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.256 0.744 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.022 0.978 47 H 0.020 0.980 48 H 0.067 0.933 49 H 0.128 0.872 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 24.937 7.994 -11.777 28.713 hybrid contribution 1.242 0.056 -0.074 1.245 sum 26.178 8.050 -11.852 29.842 Atomic orbital electron populations 1.22504 0.94588 1.03611 1.03380 1.22393 0.94084 0.92841 0.81681 1.21886 1.02612 0.90604 1.04187 1.22462 1.01800 1.02201 0.97061 1.86305 1.71498 1.23030 1.47463 1.18289 0.78581 0.80894 0.82312 1.90916 1.41759 1.70888 1.44401 1.44577 1.55148 1.12032 1.23351 1.21211 0.91204 0.79047 0.99152 0.87889 1.23035 0.99162 0.94004 0.99768 1.21437 0.91582 1.00823 0.93200 0.84952 1.24164 0.82120 0.71644 0.91232 1.90592 1.78338 1.45827 1.27766 1.86523 1.19209 1.81740 1.40857 1.22976 0.89074 1.00924 0.84700 1.19149 0.89941 0.95798 0.97348 1.22220 0.94706 1.54776 0.94655 0.92443 1.27572 0.98503 0.92148 1.04827 1.70905 1.39309 1.46470 0.99923 0.82878 0.74000 0.78168 0.70714 1.20523 1.19186 1.19115 1.23067 0.88015 1.08327 0.99365 0.86417 1.23256 0.99482 0.92690 0.99640 1.23471 1.00970 0.93194 1.00449 0.83941 0.92485 0.89186 0.92053 0.90746 0.88093 0.91533 0.91865 0.89299 0.91489 0.74444 0.90490 0.91239 0.92321 0.92057 0.97823 0.98023 0.93329 0.87213 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.51 8.37 71.98 0.60 -2.91 16 2 C 0.13 2.15 1.13 -10.79 -0.01 2.13 16 3 C -0.14 -1.47 8.85 71.98 0.64 -0.83 16 4 C -0.18 -2.83 8.37 71.98 0.60 -2.23 16 5 O -0.37 -7.48 9.94 -55.46 -0.55 -8.03 16 6 C 0.65 14.54 8.05 129.79 1.04 15.59 16 7 O -0.59 -16.34 11.59 19.83 0.23 -16.11 16 8 N -0.69 -11.93 5.18 -564.99 -2.93 -14.86 16 9 C 0.20 3.45 2.95 46.06 0.14 3.59 16 10 H 0.10 1.89 7.67 -2.39 -0.02 1.87 16 11 C -0.12 -2.82 5.98 31.88 0.19 -2.63 16 12 C -0.05 -1.23 3.15 -10.47 -0.03 -1.26 16 13 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 14 C 0.46 16.17 7.25 71.24 0.52 16.68 16 15 O -0.54 -20.94 15.27 21.97 0.34 -20.61 16 16 O -0.37 -15.16 10.22 -51.45 -0.53 -15.69 16 17 C 0.10 4.50 5.40 71.98 0.39 4.89 16 18 C 0.01 0.81 4.66 29.85 0.14 0.95 16 19 C -0.63 -36.56 9.11 25.60 0.23 -36.33 16 20 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 21 C -0.03 -1.89 5.46 84.65 0.46 -1.43 16 22 N -0.93 -58.25 13.65 21.45 0.29 -57.96 16 23 Si 1.12 50.19 29.90 68.60 2.05 52.24 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 C -0.17 -3.17 6.21 -10.05 -0.06 -3.23 16 28 H 0.12 2.65 7.06 -2.39 -0.02 2.63 16 29 C -0.11 -1.29 10.06 30.55 0.31 -0.98 16 30 C -0.16 -2.14 6.53 -10.00 -0.07 -2.20 16 31 H 0.14 1.32 8.02 -2.39 -0.02 1.30 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.55 5.88 -2.39 -0.01 1.53 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 38 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 39 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.42 5.18 8.64 -92.71 -0.80 4.38 16 42 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.07 1.78 8.05 -2.39 -0.02 1.76 16 44 H 0.06 2.72 8.13 -2.39 -0.02 2.70 16 45 H 0.06 2.83 8.13 -2.39 -0.02 2.81 16 46 H 0.00 0.20 8.01 -2.39 -0.02 0.18 16 47 H 0.00 0.08 8.01 -2.39 -0.02 0.06 16 48 H 0.26 16.36 7.22 -92.71 -0.67 15.69 16 49 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 50 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -75.13 406.63 4.23 -70.90 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.24 Total: 20.32 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 5.09 Total: -10.20 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -2.64 Total: -72.82 kcal Atomic # 8 Polarization: -59.93 SS G_CDS: -0.51 Total: -60.44 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.05 Total: 52.24 kcal Total: -75.13 4.23 -70.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344581416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.465 kcal (2) G-P(sol) polarization free energy of solvation -75.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds